NO09G02000, NO09G02000 (gene) Nannochloropsis oceanica

Overview
NameNO09G02000
Unique NameNO09G02000
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length612
Alignment locationchr9:616465..617076 +

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Properties
Property NameValue
DescriptionProtein creg1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:616465..617076 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Homology
BLAST of NO09G02000 vs. NCBI_GenBank
Match: EWM27625.1 (protein creg1 [Nannochloropsis gaditana])

HSP 1 Score: 302.8 bits (774), Expect = 8.300e-79
Identity = 145/201 (72.14%), Postives = 170/201 (84.58%), Query Frame = 0
Query:    1 MQPASVLVMLALILSSVASQA--VGRHPRPIPSQPALSGRWLMHETSWGVLSSISTLQGIEGAPFGNPQSVVDGPYHDGLLGDNSTGIPYFFVSEMDVSQVDALSNSLVSLTCSEAALANGCTLTDPESPVCIRLTVTGEMVEVVDEEEKAFAMQALFQRHPKMEGWPTDHDWKVKKIVPRHVFVLDMFGGVKAVSVEEYL 200
            M+     + ++L+  SV S     GRHPRP+P QPA SGRWL+HE++WGVLS++STL GI GAPFGNPQS+VDGPY DGL GDNSTGIPYFFVSE+DVSQ DA +NSLVSLT SEA +++ C + DPESP+CIRLTVTG++VEVVDEEE AFAMQALFQRHP+M+ WPTDH WKVKKIVPRH+FVLDMFGGVK VSV+EYL
Sbjct:    1 MRTLLFFLQVSLLWPSVNSDGPLFGRHPRPVPPQPAKSGRWLLHESTWGVLSTVSTLPGIAGAPFGNPQSLVDGPYRDGLFGDNSTGIPYFFVSELDVSQQDASANSLVSLTVSEAGVSSECAMLDPESPLCIRLTVTGDLVEVVDEEETAFAMQALFQRHPQMQTWPTDHGWKVKKIVPRHIFVLDMFGGVKPVSVDEYL 201          
BLAST of NO09G02000 vs. NCBI_GenBank
Match: NP_001007306.1 (protein CREG2 precursor [Danio rerio] >AAH85654.1 Cellular repressor of E1A-stimulated genes 2 [Danio rerio])

HSP 1 Score: 146.7 bits (369), Expect = 7.600e-32
Identity = 82/173 (47.40%), Postives = 106/173 (61.27%), Query Frame = 0
Query:   28 PIPSQPALSGRWLMHETSWGVLSSISTLQGIEGAPFGNPQSVVDGPYHDGLLGDNSTGIPYFFVSEMDVSQVDALSNSLVSLTCSEAALANGC--TLTDPESPVCIRLTVTGEMVEVVDEEEKAFAMQALFQRHPKMEGWPTDHDWKVKKIVPRHVFVLDMFGGVKAVSVEEY 199
            P   + A   R++ H+  WG LS++STL+ I G PFGN  SV DGP       DNSTG+PYF+V+ MD +  D  S    SLT SEA   + C   + DPE P C RLT+TG+MVE V+ EE  FA +A+F RHP M+ WP  H W   K+V + V++ D FGGV  V +EEY
Sbjct:  103 PPHEETARVARYMAHQGDWGFLSTLSTLEQIRGLPFGNIFSVSDGP------ADNSTGVPYFYVTPMDNTVTDLRSFPFASLTFSEAE-GDFCRKQVYDPEDPRCARLTLTGKMVE-VEPEELDFAKEAMFSRHPVMKKWPPGHQWFFMKMVLQQVWLQDWFGGVSVVPLEEY 267          
BLAST of NO09G02000 vs. NCBI_GenBank
Match: XP_022740311.1 (protein CREG1-like [Durio zibethinus])

HSP 1 Score: 144.8 bits (364), Expect = 2.900e-31
Identity = 77/178 (43.26%), Postives = 113/178 (63.48%), Query Frame = 0
Query:   27 RPIPSQPALSGRWLMHETSWGVLSSISTLQGIEGAPFGNPQSVVDGPYHDGLLGDNSTGIPYFFVSEMDVSQVDALSNSLVSLTCSEAALANGCTLTDPESPVCIRLTVTGEMVEV-VDEEEKAFAMQALFQRHPKMEGWPTDHDWKVKKIVPRHVFVLDMFGGVKAVSVEEYLSIEL 204
            +P     A   RWL+ + SWG+L++IS    +EGAPFGN  S  DG      L D STGIPYF+++ +D +  +AL +   SLT SE  L   C   DPESPVC ++T+TG +V V  + EE  FA  ALF +HP+M+GWP  HD+++ K+    +F+++ FGG K ++VE+YL+ ++
Sbjct:   30 KPDRDAAAAYARWLVSQNSWGILNTISI--ELEGAPFGNVVSFSDG------LPDKSTGIPYFYLTTLDPTARNALQDHRSSLTISEYPLGT-CGKADPESPVCAKITLTGRLVLVDANSEEAEFAQTALFTKHPEMKGWPKGHDFEIFKLEIEDIFMINWFGGPKPLTVEQYLNYKM 198          
BLAST of NO09G02000 vs. NCBI_GenBank
Match: ONK59525.1 (uncharacterized protein A4U43_C08F7320 [Asparagus officinalis])

HSP 1 Score: 144.4 bits (363), Expect = 3.800e-31
Identity = 85/200 (42.50%), Postives = 121/200 (60.50%), Query Frame = 0
Query:    3 PASVLVMLALILSS--VASQAVGRHPRPIPSQPALSGRWLMHETSWGVLSSISTLQGIEGAPFGNPQSVVDGPYHDGLLGDNSTGIPYFFVSEMDVSQVDALSNSLVSLTCSEAALANGCTLTDPESPVCIRLTVTGEMVEVV-DEEEKAFAMQALFQRHPKMEGWPTDHDWKVKKIVPRHVFVLDMFGGVKAVSVEEYL 200
            P+S+ ++L+LI  S  V+S+ +    +P PS  A + RWL  + SWGVLS+IS    +EGAPFGN  S  DG      L     GIPYF+++ +D +  DAL +  VS   SEA     C   DPE+P C +LT+ G+   V  +  E  FA QALF +HP+M+ WP DH++++ K+   H+F++D FGG K +S EEYL
Sbjct:    7 PSSLFLLLSLISFSGVVSSRQLSIPRKPEPSNAAGTARWLAAQNSWGVLSTIS--NDLEGAPFGNVVSFSDG------LPGQGRGIPYFYLTTLDPTPRDALKDPRVSFAISEAPTGT-CGKIDPENPTCSKLTLNGKFKLVEGNSSEAEFARQALFSKHPEMKDWPEDHNFQLFKLDIEHIFLIDWFGGPKPLSPEEYL 197          
BLAST of NO09G02000 vs. NCBI_GenBank
Match: XP_020244711.1 (protein CREG1 [Asparagus officinalis])

HSP 1 Score: 144.4 bits (363), Expect = 3.800e-31
Identity = 85/200 (42.50%), Postives = 121/200 (60.50%), Query Frame = 0
Query:    3 PASVLVMLALILSS--VASQAVGRHPRPIPSQPALSGRWLMHETSWGVLSSISTLQGIEGAPFGNPQSVVDGPYHDGLLGDNSTGIPYFFVSEMDVSQVDALSNSLVSLTCSEAALANGCTLTDPESPVCIRLTVTGEMVEVV-DEEEKAFAMQALFQRHPKMEGWPTDHDWKVKKIVPRHVFVLDMFGGVKAVSVEEYL 200
            P+S+ ++L+LI  S  V+S+ +    +P PS  A + RWL  + SWGVLS+IS    +EGAPFGN  S  DG      L     GIPYF+++ +D +  DAL +  VS   SEA     C   DPE+P C +LT+ G+   V  +  E  FA QALF +HP+M+ WP DH++++ K+   H+F++D FGG K +S EEYL
Sbjct:    7 PSSLFLLLSLISFSGVVSSRQLSIPRKPEPSNAAGTARWLAAQNSWGVLSTIS--NDLEGAPFGNVVSFSDG------LPGQGRGIPYFYLTTLDPTPRDALKDPRVSFAISEAPTGT-CGKIDPENPTCSKLTLNGKFKLVEGNSSEAEFARQALFSKHPEMKDWPEDHNFQLFKLDIEHIFLIDWFGGPKPLSPEEYL 197          
BLAST of NO09G02000 vs. NCBI_GenBank
Match: XP_003564023.1 (protein CREG1 [Brachypodium distachyon] >KQK18794.1 hypothetical protein BRADI_1g44730v3 [Brachypodium distachyon])

HSP 1 Score: 144.1 bits (362), Expect = 4.900e-31
Identity = 84/205 (40.98%), Postives = 126/205 (61.46%), Query Frame = 0
Query:    1 MQPASVLVMLALILSSVASQAVGRHP----RPIPSQPALSGRWLMHETSWGVLSSISTLQGIEGAPFGNPQSVVDGPYHDGLLGDNSTGIPYFFVSEMDVSQVDALSNSLVSLTCSEAALANGCTLTDPESPVCIRLTVTGEMVEVVDEE--EKAFAMQALFQRHPKMEGWPTDHDWKVKKIVPRHVFVLDMFGGVKAVSVEEYL 200
            + PA ++++  L+L  + + AV   P    +P PS+ A + RWL  E +WGVLS+IS+   + GAPFGN  S     Y DG+ G  S GIPYF+++ +D +  DAL +   SLT SE  L   C   DPE+P C +LT+TG++ ++VD +  E   A  ALF +H +MEGWP +H +++ K+   ++F++D FGG K +S  EYL
Sbjct:    2 LSPAYLVLVAVLLLLRLPAPAVAGRPLIDRKPAPSEAAATARWLAGENTWGVLSTISS--DLSGAPFGNVVS-----YSDGVPG-KSHGIPYFYLTTLDPTARDALEDDRTSLTLSEFPLGT-CGKIDPENPTCAKLTLTGKL-KLVDRQSSEADLAKAALFSKHSEMEGWPKNHHFEIFKLEIENIFLIDWFGGPKPISPSEYL 196          
BLAST of NO09G02000 vs. NCBI_GenBank
Match: XP_002741774.1 (PREDICTED: protein CREG1-like [Saccoglossus kowalevskii])

HSP 1 Score: 143.3 bits (360), Expect = 8.400e-31
Identity = 77/202 (38.12%), Postives = 119/202 (58.91%), Query Frame = 0
Query:    4 ASVLVMLALILSSVASQAVGRHPRPIPSQPALSGRWLMHETSWGVLSSISTLQGIEGAPFGNPQSVVDGPYHDGLLGDNSTGIPYFFVSEMDVSQVDALSNSLVSLTCSEAAL--ANGCTLT---DPESPVCIRLTVTGEMVEVVDEEEKAFAMQALFQRHPKMEGWPTDHDWKVKKIVPRHVFVLDMFGGVKAVSVEEYLS 201
            A + V+    + +V S  V    RP     A   R+++H   W V+++IST   + G  F N  ++ DG      L DNSTG+PYF+VS +DVS  D ++N+ V+++ SEA       C +T   DPESP+C RL + G+MV V+++ E+ FA +ALF RHP M  WP  H+W+  K+  + ++++D FGG K + VE+Y +
Sbjct:   56 AMLNVLALFTVIAVCSGKVQNVNRPPYKDIAARARYVVHRADWAVVNTISTQPRMTGLAFSNTNALADG------LPDNSTGVPYFYVSPLDVSIQDIVTNNSVTVSFSEAEFNDIEDCIITSGGDPESPLCTRLVLIGKMVSVIEQSERDFAKKALFTRHPLMPTWPESHNWEFMKLDIKDLWIIDFFGGGKHIPVEDYFN 251          
BLAST of NO09G02000 vs. NCBI_GenBank
Match: KTG44534.1 (hypothetical protein cypCar_00030359 [Cyprinus carpio])

HSP 1 Score: 143.3 bits (360), Expect = 8.400e-31
Identity = 84/180 (46.67%), Postives = 108/180 (60.00%), Query Frame = 0
Query:   26 PRPIPSQP-----ALSGRWLMHETSWGVLSSISTLQGIEGAPFGNPQSVVDGPYHDGLLGDNSTGIPYFFVSEMDVSQVDALSNSLVSLTCSEAALANGC--TLTDPESPVCIRLTVTGEMVEVVDEEEKAFAMQALFQRHPKMEGWPTDHDWKVKKIVPRHVFVLDMFGGVKAVSVEEY 199
            P  IP+ P     A   R++ H + WG L++IST + I+G PFGN  SV DGP       DNSTGIPYF+V+ MD +  D  S    SLT SEA   + C   + DPE P C RLT+TG+MVE V  EE  FA +A+F RHP M+ WP  HDW   K+V + V++ D  GGV  + +EEY
Sbjct:  102 PSSIPTPPPHEEAARVARYMAHYSDWGHLATISTQEQIKGLPFGNIFSVSDGP------ADNSTGIPYFYVTPMDNTVTDLRSFPFASLTFSEAE-GDFCRKQVYDPEDPRCARLTLTGKMVE-VGPEELDFAKEAVFSRHPVMKKWPPGHDWFFMKLVLQQVWLQDWVGGVSVIPLEEY 273          
BLAST of NO09G02000 vs. NCBI_GenBank
Match: XP_016088059.1 (PREDICTED: protein CREG2 [Sinocyclocheilus grahami])

HSP 1 Score: 143.3 bits (360), Expect = 8.400e-31
Identity = 84/180 (46.67%), Postives = 108/180 (60.00%), Query Frame = 0
Query:   26 PRPIPSQP-----ALSGRWLMHETSWGVLSSISTLQGIEGAPFGNPQSVVDGPYHDGLLGDNSTGIPYFFVSEMDVSQVDALSNSLVSLTCSEAALANGC--TLTDPESPVCIRLTVTGEMVEVVDEEEKAFAMQALFQRHPKMEGWPTDHDWKVKKIVPRHVFVLDMFGGVKAVSVEEY 199
            P  IP+ P     A   R++ H + WG L++IST + IEG PFGN  SV DGP       DNSTGIPYF+V+ MD +  D  S    SLT SEA   + C   + DPE P C RLT+TG+MVE V  EE  FA +A+F RHP M+ WP  H+W   K+V + V++ D  GGV  + +EEY
Sbjct:  102 PSSIPTPPPHEEAARVARYMAHYSDWGHLATISTQEQIEGLPFGNIFSVSDGP------ADNSTGIPYFYVTPMDNTVTDLRSFPFASLTFSEAE-GDFCRKQVYDPEDPRCARLTLTGKMVE-VGPEELDFAKEAMFSRHPVMKKWPPGHNWFFMKLVLQQVWLQDWVGGVSVIPLEEY 273          
BLAST of NO09G02000 vs. NCBI_GenBank
Match: XP_006338517.1 (PREDICTED: protein CREG1 [Solanum tuberosum])

HSP 1 Score: 142.5 bits (358), Expect = 1.400e-30
Identity = 79/206 (38.35%), Postives = 123/206 (59.71%), Query Frame = 0
Query:    4 ASVLVMLALILSSVASQAVGR-----HPRPIPSQPALSGRWLMHETSWGVLSSISTLQGIEGAPFGNPQSVVDGPYHDGLLGDNSTGIPYFFVSEMDVSQVDALSNSLVSLTCSEAALANGCTLTDPESPVCIRLTVTGEMVEVV-DEEEKAFAMQALFQRHPKMEGWPTDHDWKVKKIVPRHVFVLDMFGGVKAVSVEEYLSIEL 204
            AS+L++    L+   +   GR       RP P   AL  RWL+ ++SWGVL++I++  G  GAPFGN  S  DG      L D   GIPYF+++ +D +  +AL +   S T SE A+   C   DPE+P C ++T+ G++  V  D +E +FA  ALF +HP+MEGWP  HD+++ K+    +F+++ FGG K ++V++YL  ++
Sbjct:    8 ASILLLFVFFLAFFQNSVHGRPLLLSMSRPKPDDAALFARWLVSQSSWGVLNTIASDMG--GAPFGNVVSFSDG------LPDKGRGIPYFYLTTLDPTARNALKDQRSSFTISEYAIGT-CGKKDPENPSCAKITLVGKLKVVTGDPKETSFAQTALFTKHPEMEGWPKGHDFQIYKLEIEEIFMINWFGGPKPLTVDQYLQAKM 204          
The following BLAST results are available for this feature:
BLAST of NO09G02000 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM27625.18.300e-7972.14protein creg1 [Nannochloropsis gaditana][more]
NP_001007306.17.600e-3247.40protein CREG2 precursor [Danio rerio] >AAH85654.1 ... [more]
XP_022740311.12.900e-3143.26protein CREG1-like [Durio zibethinus][more]
ONK59525.13.800e-3142.50uncharacterized protein A4U43_C08F7320 [Asparagus ... [more]
XP_020244711.13.800e-3142.50protein CREG1 [Asparagus officinalis][more]
XP_003564023.14.900e-3140.98protein CREG1 [Brachypodium distachyon] >KQK18794.... [more]
XP_002741774.18.400e-3138.12PREDICTED: protein CREG1-like [Saccoglossus kowale... [more]
KTG44534.18.400e-3146.67hypothetical protein cypCar_00030359 [Cyprinus car... [more]
XP_016088059.18.400e-3146.67PREDICTED: protein CREG2 [Sinocyclocheilus grahami... [more]
XP_006338517.11.400e-3038.35PREDICTED: protein CREG1 [Solanum tuberosum][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL121nonsL121Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL120nonsL120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR128ngnoR128Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010660NSK010660Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G02000.1NO09G02000.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100256g4gene2936Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G02000.1NO09G02000.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G02000 ID=NO09G02000|Name=NO09G02000|organism=Nannochloropsis oceanica|type=gene|length=612bp
ATGCAGCCTGCTTCCGTCCTAGTCATGCTGGCGCTTATCCTGTCAAGCGT
GGCCTCGCAAGCGGTGGGACGTCACCCGAGGCCTATCCCTTCCCAGCCGG
CGCTGTCTGGCAGGTGGCTAATGCACGAGACCTCGTGGGGCGTCTTGTCC
TCCATCTCAACCCTCCAAGGCATTGAGGGTGCCCCGTTTGGGAATCCGCA
ATCAGTGGTTGATGGACCTTATCATGACGGTCTGTTGGGCGACAACTCAA
CCGGCATTCCTTACTTCTTCGTTTCTGAGATGGATGTGAGCCAAGTGGAC
GCATTATCCAACTCCCTCGTCTCTCTCACCTGCTCCGAGGCTGCATTGGC
GAACGGCTGCACGCTGACTGACCCCGAGAGCCCGGTCTGTATTCGTTTGA
CGGTGACGGGCGAGATGGTAGAGGTGGTAGACGAGGAAGAGAAGGCTTTT
GCGATGCAAGCTTTATTTCAGCGCCACCCGAAGATGGAAGGATGGCCGAC
AGACCACGATTGGAAGGTGAAGAAGATTGTGCCTCGGCATGTTTTCGTGC
TGGATATGTTTGGTGGCGTTAAGGCCGTGAGTGTAGAGGAGTATTTGAGT
ATTGAACTTTAG
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protein sequence of NO09G02000.1

>NO09G02000.1-protein ID=NO09G02000.1-protein|Name=NO09G02000.1|organism=Nannochloropsis oceanica|type=polypeptide|length=204bp
MQPASVLVMLALILSSVASQAVGRHPRPIPSQPALSGRWLMHETSWGVLS
SISTLQGIEGAPFGNPQSVVDGPYHDGLLGDNSTGIPYFFVSEMDVSQVD
ALSNSLVSLTCSEAALANGCTLTDPESPVCIRLTVTGEMVEVVDEEEKAF
AMQALFQRHPKMEGWPTDHDWKVKKIVPRHVFVLDMFGGVKAVSVEEYLS
IEL*
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Synonyms
Publications