NO09G01970, NO09G01970 (gene) Nannochloropsis oceanica

Overview
NameNO09G01970
Unique NameNO09G01970
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2607
Alignment locationchr9:606082..608688 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:606082..608688 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO09G01970 vs. NCBI_GenBank
Match: EWM27626.1 (hypothetical protein Naga_100256g1 [Nannochloropsis gaditana])

HSP 1 Score: 108.6 bits (270), Expect = 9.800e-20
Identity = 89/277 (32.13%), Postives = 122/277 (44.04%), Query Frame = 0 
Query:  600 RSGYKRPYALVAVAGETSLSSSAAGATAAIEELQQFPLFPPNQQRRGRAAFSSSSFPCLGDVLLYKTLELDGETWSPVLSPWQCGVVRALLSEG------QRLEMGVLPLSLGKGEEEKGNMEVEGE--VIEVEWVEMEEVRIRGGPTFERLKRLTDRGEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDVAETEDVVLQGAAEGPSGEVNSTMSISSRRFVIEDDSELADILQRKWAQLNGSGARERPHRQQQXXEEIEV 869
            R GYKRPYALVAVAG    + SA  + +   +  Q P  P                PC+GDVL Y+TL LDG +W+PVLSP   G+VRA+  +G      Q +E  V      K    +G  E  G+  ++EVEW  +  VR   GPTFER+ R   R E                                                  ++ VL GAAEGPSGE++           ++ DS+LA +L+R+W +++GS   E   R  +   +IEV
Sbjct:   59 RGGYKRPYALVAVAGNGERAPSAPESVSKGLDWPQSPSRPS---------------PCVGDVLGYQTLNLDGGSWTPVLSPVHAGIVRAVQGDGLLKLETQCVEDEVTRSGGRKRTSARGVREARGKGCLVEVEWEGLVSVRALAGPTFERITRRRQREESGLEETCDNVDGRTSRDGSCLGSKSCSSSSGDGGGRIRKM---------RKEDVLNGAAEGPSGELSD---------FVDYDSDLAAMLRRRWMEVSGSDGGEISRRGVEVGGDIEV 302
The following BLAST results are available for this feature:
BLAST of NO09G01970 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27626.19.800e-2032.13hypothetical protein Naga_100256g1 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL121nonsL121Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL120nonsL120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR128ngnoR128Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010664NSK010664Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G01970.1NO09G01970.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100256g1gene2939Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G01970.1NO09G01970.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G01970 ID=NO09G01970|Name=NO09G01970|organism=Nannochloropsis oceanica|type=gene|length=2607bp
ATGCTAGATATGGGACGCATTGGCACGAAGATCATGGCTACGAAAAAGCG
GAAGGAGCGCCCCGACCAGCAAGGTCATCAGGAGCAGGAGCAACAGCAAC
AACTCCTTACTCCTCCGCTGCCACAGCCGCTCCTTAGCCTTCCTCAGGGG
ACTCCCCATCCTTCTTCGCAGCCGACAACATTTCTGGCCTCCACACCACC
AGTTCAAAGGCTACCATTGCGTCGCGTAAAGCTCCATTTCCACGCCTCTG
TCCGCCCGTTCCTGACGCGTGGCCAGGAAGCAAAGCTGGTGATACTTCTG
CCCCCACCCCTCGTCAAAGTGCACGATTTGGCTGATTTCTTGGCCCTGAC
CTACCTATCTTCTTCCCCTCCCTTGTCGTCACGTGCTACTATGACTGCCC
CCCCTCTTTTCTCCGTGGCCCTTAGCATCGATGGCTTTCACCTTCCGCCC
TCCCAAAAAATGGCTGTGATTCGAGATGGAGACGTCATCCTCGTTCGTCG
TCAGGGTACACCTTTGGACGAGGCAACCAGCCCCACCATCCAAGCTCCCA
TGTCACCGTCAGCAGTATCCACATCAATGCCTGTAGCAACAGCCGCCGTA
GCCCCAGAGCGAGCAGCAGCCAGGACGAAGAAGCGATGCATCGAGGCTGC
TCCTGTGAGAGGAAGTGAAGCTGCATCACCCGCAGTAGCGCCGCCAGCAG
CAGCAGCAACGGCATGCATCTCAACCGCTACTAAGACAACCTTGGATAAT
ACACCAGCTGTCAAGTCTTCTTTTGTGACAGCACCTGAGGCAGCGACAGA
GGCGACCATAGCAGCCGTATCAAGGAGACAAGGGGCAGCAGCAGGGGAAA
GGAACAGTGGAGGGAAAAAGAATCTTCCAATGAAGAAATTGACGTTCTCG
TCCTCACGGAAGCATGTGCGTTTCACAGAAGAAGGCGAAGCGCTGGAGGA
GGAGCCCGAGGAGAAAGAAGCTTCCCCAAGATCAGCAAAAGCGATGGTGC
CTACATTGACAGCTGCTGTGACGGAGACTTTAGCTCCTACGTCTTCCGTT
ACAGCAGCAACAGCAGCAGCATCACTACCGCTACTATCACCACCAGGAGC
AACAGCATCAGCGACAGCAGCAGCAGCAGCAGCAGCAACAACAACATTAG
AAAATGATGACCCACGCGACCTCGTCCTCAACCACGTGCACCCAAGCCGC
CGAGTAAATTTCAGTAAGGGGCAAGATGGGGAATGGCAGAGCGACTACAA
AGGTATCACCGCGAGGAGGAAGCAGCAGCAGCAGCAACAGCAGCAGCAGC
AGCAGCAGTACCTGAGTAAGCCTCCGACCGTTTTTTTGCCCCGGTGCTTG
ACAGTGGTGGGGAAGAGATGTCCACCTTTCCTTACCTCTGTTACTTCTGC
TCCTGCTTCTGATATCGCTCCTGCTCCTGTTATCGCCTTTGCCAGTGGTG
CCGCTTCTGTGAACGACTGCAAAGAGGCAAGGAGCTTGGGCATGATGACG
AGGGGGAAGAGGGAGGCAAGGAGTTCAGGTATGATTACGAAGGGAAAGAG
GGTGAGGGGAAAGAAGGGAGAGGAGAAGGGGGAGCAGCTGGCTGCAGGCA
AGAGCAGCAGCAATCTCAGCCGTGAAAGAAGCGGCGAGACGAAGGAGGAG
GAGGAGGAAGAAGAGGTGGAGGTGGAGAGTGACGACAGCAGCGACAGCAG
CTCCTCCTCTTCATCGTCTTCCTCCTCGTCCTTATCTTCGGGTTATGATA
AAGACGAGGACGATGAAGAAGATGAGGATGAGGAAGAGCGTGATACTCGA
TCAGGTTATAAACGGCCTTACGCCTTGGTGGCCGTGGCAGGAGAAACCTC
ACTATCATCCTCTGCAGCAGGCGCAACAGCCGCAATAGAAGAGTTGCAGC
AATTTCCCCTTTTCCCCCCCAACCAGCAAAGGCGCGGTCGAGCTGCTTTT
TCCTCCTCTTCTTTCCCTTGTTTGGGTGATGTTCTACTATACAAAACACT
CGAGCTGGATGGCGAGACGTGGAGTCCTGTCCTCTCTCCCTGGCAATGTG
GTGTTGTTCGTGCGTTGCTCTCAGAAGGGCAACGGTTGGAAATGGGCGTG
CTTCCTCTTAGTCTTGGGAAGGGTGAGGAGGAGAAGGGGAATATGGAGGT
GGAGGGAGAGGTGATTGAGGTGGAGTGGGTAGAGATGGAAGAAGTGCGTA
TACGGGGAGGACCGACGTTTGAGAGGCTTAAGAGGCTGACGGATCGAGGG
GAAAAGGAGGCGGAGAAAGAAGGCATTGGCGATAAGGGTGAGGGTGAGAA
TAGTAGTGGGAGCAATAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGTGAGGAGGAGGAGGACAGTGGCGACGATGTGGCCGAG
ACGGAGGACGTGGTCCTCCAGGGAGCAGCGGAGGGACCGAGCGGGGAAGT
GAATAGCACGATGAGCATCAGCAGCAGGCGTTTTGTCATTGAGGATGACA
GCGAATTGGCGGATATATTGCAGCGGAAATGGGCACAATTAAATGGAAGT
GGAGCGCGAGAGAGGCCCCATCGCCAGCAACAGGAGGAAGAGGAGATTGA
GGTCTAG
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protein sequence of NO09G01970.1

>NO09G01970.1-protein ID=NO09G01970.1-protein|Name=NO09G01970.1|organism=Nannochloropsis oceanica|type=polypeptide|length=869bp
MLDMGRIGTKIMATKKRKERPDQQGHQEQEQQQQLLTPPLPQPLLSLPQG
TPHPSSQPTTFLASTPPVQRLPLRRVKLHFHASVRPFLTRGQEAKLVILL
PPPLVKVHDLADFLALTYLSSSPPLSSRATMTAPPLFSVALSIDGFHLPP
SQKMAVIRDGDVILVRRQGTPLDEATSPTIQAPMSPSAVSTSMPVATAAV
APERAAARTKKRCIEAAPVRGSEAASPAVAPPAAAATACISTATKTTLDN
TPAVKSSFVTAPEAATEATIAAVSRRQGAAAGERNSGGKKNLPMKKLTFS
SSRKHVRFTEEGEALEEEPEEKEASPRSAKAMVPTLTAAVTETLAPTSSV
TAATAAASLPLLSPPGATASATAAAAAAATTTLENDDPRDLVLNHVHPSR
RVNFSKGQDGEWQSDYKGITARRKQQQQQQQQQQQQYLSKPPTVFLPRCL
TVVGKRCPPFLTSVTSAPASDIAPAPVIAFASGAASVNDCKEARSLGMMT
RGKREARSSGMITKGKRVRGKKGEEKGEQLAAGKSSSNLSRERSGETKEE
EEEEEVEVESDDSSDSSSSSSSSSSSSLSSGYDKDEDDEEDEDEEERDTR
SGYKRPYALVAVAGETSLSSSAAGATAAIEELQQFPLFPPNQQRRGRAAF
SSSSFPCLGDVLLYKTLELDGETWSPVLSPWQCGVVRALLSEGQRLEMGV
LPLSLGKGEEEKGNMEVEGEVIEVEWVEMEEVRIRGGPTFERLKRLTDRG
EKEAEKEGIGDKGEGENSSGSNSSSSSSSSSSSSSSSSEEEEDSGDDVAE
TEDVVLQGAAEGPSGEVNSTMSISSRRFVIEDDSELADILQRKWAQLNGS
GARERPHRQQQEEEEIEV*
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Synonyms
Publications