NO09G01910, NO09G01910 (gene) Nannochloropsis oceanica

Overview
NameNO09G01910
Unique NameNO09G01910
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1548
Alignment locationchr9:594298..595845 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:594298..595845 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0051536iron-sulfur cluster binding
GO:0009055electron transfer activity
GO:00515372 iron, 2 sulfur cluster binding
GO:0051536iron-sulfur cluster binding
GO:0009055electron transfer activity
Vocabulary: INTERPRO
TermDefinition
IPR0360102Fe-2S_ferredoxin-like_sf
IPR0010412Fe-2S_ferredoxin-type
Vocabulary: Biological Process
TermDefinition
GO:0022900electron transport chain
Homology
BLAST of NO09G01910 vs. NCBI_GenBank
Match: CBN78419.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 102.4 bits (254), Expect = 1.200e-18
Identity = 58/125 (46.40%), Postives = 76/125 (60.80%), Query Frame = 0
Query:   26 PAPAPVSAPSVR-HSRSRMAPLQMGFFDSIKKGFENEAQVQPAPNAGLKNGPPIVTITFLPANKKVQAVAGQNLKDVALAAKIPIKYNCKKGECGTCEIDLNGKKVRTCVGIVPRGARKNEVTIK 150
            PAPA  +A + R   +    PL MG+ D++ K F NE  + P  N GLKN P    +T     K +QAV GQ L+DV LAAK  I+Y C+KG+CGTCE  ++G+K+R C  IVPR   K +V IK
Sbjct:   39 PAPAATTAAAPRPRYQQHAGPLLMGWGDALGKAFANE-DMAPQKNPGLKNAPNTCMVTV--NGKTIQAVQGQRLRDVVLAAKAKIEYGCEKGDCGTCESIVDGRKIRICKAIVPR--NKTKVNIK 158          
BLAST of NO09G01910 vs. NCBI_GenBank
Match: XP_002184071.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC44249.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 77.4 bits (189), Expect = 4.300e-11
Identity = 50/145 (34.48%), Postives = 73/145 (50.34%), Query Frame = 0
Query:    1 MFVARSSLLCVVAVVLACVSQAFIIPAPAPVSAPSVRHSRSRMAPLQMGFFDSIKKGFENEAQVQPAPNAGLKNGPPIVTITFLPANKKVQAVAGQNLKDVALAAKIPIKYNCKKGECGTCEIDLNGKKVRTCVGIVPRGARKNE 146
            M+ ARS +   +A+ L     AF +      +APS        +  ++ FF  +   F+N+  +    NAGLKNGP       +   K   AVAGQ L  VA   ++ I  NC+KG+CGTC + LNG++V+ C   +P G  K E
Sbjct:    2 MYTARSFIGTFLALCLIAKVTAFGVIPRTNSAAPS--------STTRLHFFGGLSNAFKNDDGLGKPQNAGLKNGPKYNDNVTVNGKKVEGAVAGQKLTAVANKVRVKIPVNCQKGDCGTCTVKLNGRQVKACSTPLPTGKAKIE 138          
BLAST of NO09G01910 vs. NCBI_GenBank
Match: XP_002290679.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED92431.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 77.4 bits (189), Expect = 4.300e-11
Identity = 34/93 (36.56%), Postives = 48/93 (51.61%), Query Frame = 0
Query:   48 MGFFDSIKKGFENEAQVQPAPNAGLKNGPPIVTITFLPANKKVQAVAGQNLKDVALAAKIPIKYNCKKGECGTCEIDLNGKKVRTCVGIVPRG 141
            +  F  +K  F N+  +  A NAGL  GP       +        V  Q +  V  AA++ + YNC+ GECGTC + +NG+K+R CV  VP G
Sbjct:   39 LNIFGGLKDAFSNDDSLGKAKNAGLSGGPKYNENVTVNGKAVPNVVVDQKISQVCNAARVKVPYNCQNGECGTCTVKMNGRKIRACVSKVPSG 131          
BLAST of NO09G01910 vs. NCBI_GenBank
Match: KOO29794.1 (hypothetical protein Ctob_000897 [Chrysochromulina sp. CCMP291])

HSP 1 Score: 75.5 bits (184), Expect = 1.600e-10
Identity = 43/105 (40.95%), Postives = 59/105 (56.19%), Query Frame = 0
Query:   48 MGFFDSIKKGFENEAQVQPAPNAGLKNGPPIVTITFL--PANKKV-QAVAGQNLKDVALAAKIPIKYNCKKGECGTCEIDLNGKKVRTCVGIVPRGARKNEVTIK 150
            MG FD +K  F N+  +    NAGL       T+T++     KKV QA+AGQ L+DVA +  IPIKY+C +G C TCE  +   + + CV  +P      +VTIK
Sbjct:    1 MGMFDGLKGAFANDDTLGKRENAGLSKEKTKRTVTWVGPKGEKKVAQALAGQKLRDVARSCNIPIKYDCNEGTCKTCEAQVGSGRAKICVTKMP----DKDVTIK 101          
BLAST of NO09G01910 vs. NCBI_GenBank
Match: OEU13353.1 (hypothetical protein FRACYDRAFT_189533 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 69.3 bits (168), Expect = 1.200e-8
Identity = 35/92 (38.04%), Postives = 48/92 (52.17%), Query Frame = 0
Query:   49 GFFDSIKKGFENEAQVQPAPNAGLKNGPPIVTITFLPANKKVQAVAGQNLKDVALAAKIPIKYNCKKGECGTCEIDLNGKKVRTCVGIVPRG 141
            GF D+ K  F N+  +    N GL  GP       +   K  +AV GQ L  VA   ++ I  NC +G+CGTC + LNGK+V+ C   V +G
Sbjct:   40 GFGDAFKGAFGNDDSLGEVKNEGLSGGPDYNENVTVNGKKVPKAVVGQKLTVVAGRVRVKIPVNCNQGDCGTCMVKLNGKQVKACQTKVAKG 131          
BLAST of NO09G01910 vs. NCBI_GenBank
Match: XP_005758600.1 (hypothetical protein EMIHUDRAFT_219518 [Emiliania huxleyi CCMP1516] >EOD06171.1 hypothetical protein EMIHUDRAFT_219518 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 67.8 bits (164), Expect = 3.400e-8
Identity = 36/84 (42.86%), Postives = 49/84 (58.33%), Query Frame = 0
Query:   58 FENEAQVQPAPNAGLKNGPPIVTITFLPANKKVQ---AVAGQNLKDVALAAKIPIKYNCKKGECGTCEIDLNGKKVRTCVGIVP 139
            F N+  +    NAGL       TIT+  ++ K +    V GQ L+DVA AA IPIKY+C +G C TC++ + G  V+ CVG VP
Sbjct:    8 FANDDTLGARDNAGLTKEKTKRTITWKSSSGKTKQSTVVPGQKLRDVARAAGIPIKYSCNEGTCKTCQVKMGGGMVKVCVGKVP 91          
BLAST of NO09G01910 vs. NCBI_GenBank
Match: XP_005764913.1 (hypothetical protein EMIHUDRAFT_120118 [Emiliania huxleyi CCMP1516] >EOD12484.1 hypothetical protein EMIHUDRAFT_120118 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 67.0 bits (162), Expect = 5.800e-8
Identity = 39/115 (33.91%), Postives = 62/115 (53.91%), Query Frame = 0
Query:   42 RMAPLQMGFFDSIKKGFENEAQVQPAPNAGLKNGPPIVTITF---LPAN----KKVQAVAGQNLKDVALAAKIPIKYNCKKGECGTCEIDLNGKKVRTCVGIVPRGARKNEVTIK 150
            R A ++MG FD++ +  +N+  +     AGL     + TIT+    P N    + V    GQ L DVA  + IPIKY+C +G C  C++ ++G++V  CV       +K +VTI+
Sbjct:   34 RRAAVRMGLFDALAESMKNDETLGKREGAGLSKEVELKTITWKGPKPDNFWEQQPVSTSQGQKLADVARQSGIPIKYSCMEGHCRVCDVVVDGRRVPACVA----RCQKKDVTIE 144          
BLAST of NO09G01910 vs. NCBI_GenBank
Match: XP_005768218.1 (hypothetical protein EMIHUDRAFT_119258 [Emiliania huxleyi CCMP1516] >EOD15789.1 hypothetical protein EMIHUDRAFT_119258 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 67.0 bits (162), Expect = 5.800e-8
Identity = 39/115 (33.91%), Postives = 62/115 (53.91%), Query Frame = 0
Query:   42 RMAPLQMGFFDSIKKGFENEAQVQPAPNAGLKNGPPIVTITF---LPAN----KKVQAVAGQNLKDVALAAKIPIKYNCKKGECGTCEIDLNGKKVRTCVGIVPRGARKNEVTIK 150
            R A ++MG FD++ +  +N+  +     AGL     + TIT+    P N    + V    GQ L DVA  + IPIKY+C +G C  C++ ++G++V  CV       +K +VTI+
Sbjct:   34 RRAAVRMGLFDALAESMKNDETLGKREGAGLSKEVELKTITWKGPKPDNFWEQQPVSTSQGQKLADVARQSGIPIKYSCMEGHCRVCDVVVDGRRVPACVA----RCQKKDVTIE 144          
BLAST of NO09G01910 vs. NCBI_GenBank
Match: CEM13725.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 65.9 bits (159), Expect = 1.300e-7
Identity = 33/71 (46.48%), Postives = 47/71 (66.20%), Query Frame = 0
Query:   78 IVTITFLPANKKVQAVAGQNLKDVALAAKIPIKYNCKKGECGTCEI----DLNGK--KVRTC---VGIVPR 140
            +VTITF P+ K ++A  G++L ++    KIP+KYNCKKG+C TCE     D NG+  K+R C   VG +P+
Sbjct:   67 MVTITFEPSKKAIEAKPGESLAEICAKNKIPVKYNCKKGQCATCESTLRNDKNGRTQKIRPCIYTVGSLPK 137          
BLAST of NO09G01910 vs. NCBI_GenBank
Match: CBJ30370.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 64.3 bits (155), Expect = 3.700e-7
Identity = 31/68 (45.59%), Postives = 41/68 (60.29%), Query Frame = 0
Query:   74 NGPPIVTITFLPANKKVQAVAGQNLKDVALAAKIPIKYNCKKGECGTCEIDLNGKKVRTCVGIVPRGA 142
            N   +  +TF P  KK +A  G  LK VA  A     Y C++G+CGTCE  +NGKK+R C+G +P GA
Sbjct:   34 NSLSMADVTF-PGGKKTKANGGAPLKTVAQKAGYKAAYGCEEGKCGTCEHKVNGKKIRLCIGKLPAGA 100          
The following BLAST results are available for this feature:
BLAST of NO09G01910 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 12
Match NameE-valueIdentityDescription
CBN78419.11.200e-1846.40conserved unknown protein [Ectocarpus siliculosus][more]
XP_002184071.14.300e-1134.48predicted protein [Phaeodactylum tricornutum CCAP ... [more]
XP_002290679.14.300e-1136.56predicted protein [Thalassiosira pseudonana CCMP13... [more]
KOO29794.11.600e-1040.95hypothetical protein Ctob_000897 [Chrysochromulina... [more]
OEU13353.11.200e-838.04hypothetical protein FRACYDRAFT_189533 [Fragilario... [more]
XP_005758600.13.400e-842.86hypothetical protein EMIHUDRAFT_219518 [Emiliania ... [more]
XP_005764913.15.800e-833.91hypothetical protein EMIHUDRAFT_120118 [Emiliania ... [more]
XP_005768218.15.800e-833.91hypothetical protein EMIHUDRAFT_119258 [Emiliania ... [more]
CEM13725.11.300e-746.48unnamed protein product [Vitrella brassicaformis C... [more]
CBJ30370.13.700e-745.59conserved unknown protein [Ectocarpus siliculosus][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL121nonsL121Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL120nonsL120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR128ngnoR128Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010679NSK010679Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G01910.1NO09G01910.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|630234gene_4360Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G01910.1NO09G01910.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G01910 ID=NO09G01910|Name=NO09G01910|organism=Nannochloropsis oceanica|type=gene|length=1548bp
ACAGGTATTTTAACACTTTATCGACACCTCGCACCATGTTTGTCGCCCGG
TCCTCTTTGCTGTGCGTCGTGGCCGTCGTCCTTGCTTGCGTTTCCCAGGC
CTTCATTATCCCAGCCCCAGCCCCAGTCTCTGCCCCGTCGGTCCGCCATA
GCCGCAGTCGGATGGCGCCTTTGCAAATGGGTTTTTTCGACTCCATTAAG
AAAGGTTTTGAGAACGAGGCACAAGTCCAACCGGCACCCAATGCCGGCCT
CAAGAATgtacgtgcaagtgaaaggacaaggtcgaggtagtgagacgatg
acgtcaggcctctatgagcggaatagacactaccacgcagcaatgcgctc
ttatattatcgaatgacatgcatctaggatcgataatgcgggaaatggtt
agtgtaaccaaggcctacaggcctcgtacctttgtgtagcctatactcgt
gccttctcccctcacacaccatcccctctccaagcatgcaccccacccca
tggccttcatcatcttccctctgcactcgcctacacaaccactcacgccc
ccgcctatcttccttttttttctgtccctgcatgcactcagGGCCCCCCC
ATTGTGACCATTACGTTTCTCCCCGCCAACAAGAAAGTCCAAGCCGTGGC
CGGGCAAAACTTGAAAGACGTCGCTCTTGCCGCCAAGATTCCCATCAAGT
ACAACTGCAAAAAAGGGGAGTGCGGGACTTGCGAGATCGATTTGAATGGG
AAAAAGGTCAGGACATGTGTCGGCATTGTGCCCCGTGGGGCCCGTAAGAA
TGAAGTGACAATCAAGGTGCTCAAGTAAGGAAGAAGTGCAGCAGCAGCAG
CAGCAGCAACACCAACGCTGCTGTTACTGCCGCTGCTGCCATATCGAGAT
CTATCCATCCTTCCTCCACACGTGCATATAGAAAAGACACAAGATATGAG
AAGATTAGGGAAAAAAGTGCCTCCTATGAGTCCAATAGTCTTTGTATACT
TCCCTCTTTTGAACCGTACACCAAATCCTTCCCTGCCGTCCCTCCCCTCC
CTCACTTTCGCTTGGCCACCCGCCTTGTACCCACCCTGTGGAAAAGATGG
CGAAGCGGTTATGCCTGCATGCAGATGAAGATGAGAATAGAAGAGAGAGC
GGAGAAGGGAGAACAAGCAATCAAATGTCCTTGATAATACAGCTCAAACT
CATATCGTTGCTCTTTACTTTCTTTGATTTTCCTATCCCACGATGGGATC
GTGGGATGAGTATCGGGTACTTTCTAGTTCTTAATTCGATTTGAATTTCT
TTTTCCTATAAATCGCGTACATATGTGTGAAATTTCAAAATACCATTACT
TTCCTATCACTCTCATTCGCACACACGCAAACACACACACTCACACCCGT
ACACACACGCAGGCACTCACACACGCACATGTGCGTACAATAACTCAACA
TTTTTTCGCCGTCATTGCCTCAATAGTTGTCGCCAATGCCACACCTCCAT
CTTATTATCTCATTGCTACTACTATTTACTCCCCACCCACCCATCCTC
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protein sequence of NO09G01910.1

>NO09G01910.1-protein ID=NO09G01910.1-protein|Name=NO09G01910.1|organism=Nannochloropsis oceanica|type=polypeptide|length=153bp
MFVARSSLLCVVAVVLACVSQAFIIPAPAPVSAPSVRHSRSRMAPLQMGF
FDSIKKGFENEAQVQPAPNAGLKNGPPIVTITFLPANKKVQAVAGQNLKD
VALAAKIPIKYNCKKGECGTCEIDLNGKKVRTCVGIVPRGARKNEVTIKV
LK*
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Synonyms
Publications