NO09G01910.1, NO09G01910.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G01910.1
Unique NameNO09G01910.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1214
Alignment locationchr9:594298..595845 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:594298..595845 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G01910.1 vs.
Match: CBN78419.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 102.4 bits (254), Expect = 1.200e-18
Identity = 59/125 (47.20%), Postives = 77/125 (61.60%), Query Frame = 0 
Query:   26 PAPAPVSAPSVRHSRSRMA-PLQMGFFDSIKKGFENEAQVQPAPNAGLKNGPPIVTITFLPANKKVQAVAGQNLKDVALAAKIPIKYNCKKGECGTCEIDLNGKKVRTCVGIVPRGARKNEVTIK 150
            PAPA  +A + R    + A PL MG+ D++ K F NE  + P  N GLKN P    +T     K +QAV GQ L+DV LAAK  I+Y C+KG+CGTCE  ++G+K+R C  IVPR   K +V IK
Sbjct:   39 PAPAATTAAAPRPRYQQHAGPLLMGWGDALGKAFANE-DMAPQKNPGLKNAPNTCMVTV--NGKTIQAVQGQRLRDVVLAAKAKIEYGCEKGDCGTCESIVDGRKIRICKAIVPR--NKTKVNIK 158
The following BLAST results are available for this feature:
BLAST of NO09G01910.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBN78419.11.200e-1847.20conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G01910NO09G01910Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G01910.1NO09G01910.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G01910.1.cds1NO09G01910.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G01910.1.cds2NO09G01910.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G01910.1 ID=NO09G01910.1|Name=NO09G01910.1|organism=Nannochloropsis oceanica|type=mRNA|length=1214bp
ACAGGTATTTTAACACTTTATCGACACCTCGCACCATGTTTGTCGCCCGG
TCCTCTTTGCTGTGCGTCGTGGCCGTCGTCCTTGCTTGCGTTTCCCAGGC
CTTCATTATCCCAGCCCCAGCCCCAGTCTCTGCCCCGTCGGTCCGCCATA
GCCGCAGTCGGATGGCGCCTTTGCAAATGGGTTTTTTCGACTCCATTAAG
AAAGGTTTTGAGAACGAGGCACAAGTCCAACCGGCACCCAATGCCGGCCT
CAAGAATGGCCCCCCCATTGTGACCATTACGTTTCTCCCCGCCAACAAGA
AAGTCCAAGCCGTGGCCGGGCAAAACTTGAAAGACGTCGCTCTTGCCGCC
AAGATTCCCATCAAGTACAACTGCAAAAAAGGGGAGTGCGGGACTTGCGA
GATCGATTTGAATGGGAAAAAGGTCAGGACATGTGTCGGCATTGTGCCCC
GTGGGGCCCGTAAGAATGAAGTGACAATCAAGGTGCTCAAGTAAGGAAGA
AGTGCAGCAGCAGCAGCAGCAGCAACACCAACGCTGCTGTTACTGCCGCT
GCTGCCATATCGAGATCTATCCATCCTTCCTCCACACGTGCATATAGAAA
AGACACAAGATATGAGAAGATTAGGGAAAAAAGTGCCTCCTATGAGTCCA
ATAGTCTTTGTATACTTCCCTCTTTTGAACCGTACACCAAATCCTTCCCT
GCCGTCCCTCCCCTCCCTCACTTTCGCTTGGCCACCCGCCTTGTACCCAC
CCTGTGGAAAAGATGGCGAAGCGGTTATGCCTGCATGCAGATGAAGATGA
GAATAGAAGAGAGAGCGGAGAAGGGAGAACAAGCAATCAAATGTCCTTGA
TAATACAGCTCAAACTCATATCGTTGCTCTTTACTTTCTTTGATTTTCCT
ATCCCACGATGGGATCGTGGGATGAGTATCGGGTACTTTCTAGTTCTTAA
TTCGATTTGAATTTCTTTTTCCTATAAATCGCGTACATATGTGTGAAATT
TCAAAATACCATTACTTTCCTATCACTCTCATTCGCACACACGCAAACAC
ACACACTCACACCCGTACACACACGCAGGCACTCACACACGCACATGTGC
GTACAATAACTCAACATTTTTTCGCCGTCATTGCCTCAATAGTTGTCGCC
AATGCCACACCTCCATCTTATTATCTCATTGCTACTACTATTTACTCCCC
ACCCACCCATCCTC
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protein sequence of NO09G01910.1

>NO09G01910.1-protein ID=NO09G01910.1-protein|Name=NO09G01910.1|organism=Nannochloropsis oceanica|type=polypeptide|length=153bp
MFVARSSLLCVVAVVLACVSQAFIIPAPAPVSAPSVRHSRSRMAPLQMGF
FDSIKKGFENEAQVQPAPNAGLKNGPPIVTITFLPANKKVQAVAGQNLKD
VALAAKIPIKYNCKKGECGTCEIDLNGKKVRTCVGIVPRGARKNEVTIKV
LK*
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mRNA from alignment at chr9:594298..595845+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G01910.1 ID=NO09G01910.1|Name=NO09G01910.1|organism=Nannochloropsis oceanica|type=mRNA|length=1548bp|location=Sequence derived from alignment at chr9:594298..595845+ (Nannochloropsis oceanica)
ACAGGTATTTTAACACTTTATCGACACCTCGCACCATGTTTGTCGCCCGG
TCCTCTTTGCTGTGCGTCGTGGCCGTCGTCCTTGCTTGCGTTTCCCAGGC
CTTCATTATCCCAGCCCCAGCCCCAGTCTCTGCCCCGTCGGTCCGCCATA
GCCGCAGTCGGATGGCGCCTTTGCAAATGGGTTTTTTCGACTCCATTAAG
AAAGGTTTTGAGAACGAGGCACAAGTCCAACCGGCACCCAATGCCGGCCT
CAAGAATGTACGTGCAAGTGAAAGGACAAGGTCGAGGTAGTGAGACGATG
ACGTCAGGCCTCTATGAGCGGAATAGACACTACCACGCAGCAATGCGCTC
TTATATTATCGAATGACATGCATCTAGGATCGATAATGCGGGAAATGGTT
AGTGTAACCAAGGCCTACAGGCCTCGTACCTTTGTGTAGCCTATACTCGT
GCCTTCTCCCCTCACACACCATCCCCTCTCCAAGCATGCACCCCACCCCA
TGGCCTTCATCATCTTCCCTCTGCACTCGCCTACACAACCACTCACGCCC
CCGCCTATCTTCCTTTTTTTTCTGTCCCTGCATGCACTCAGGGCCCCCCC
ATTGTGACCATTACGTTTCTCCCCGCCAACAAGAAAGTCCAAGCCGTGGC
CGGGCAAAACTTGAAAGACGTCGCTCTTGCCGCCAAGATTCCCATCAAGT
ACAACTGCAAAAAAGGGGAGTGCGGGACTTGCGAGATCGATTTGAATGGG
AAAAAGGTCAGGACATGTGTCGGCATTGTGCCCCGTGGGGCCCGTAAGAA
TGAAGTGACAATCAAGGTGCTCAAGTAAGGAAGAAGTGCAGCAGCAGCAG
CAGCAGCAACACCAACGCTGCTGTTACTGCCGCTGCTGCCATATCGAGAT
CTATCCATCCTTCCTCCACACGTGCATATAGAAAAGACACAAGATATGAG
AAGATTAGGGAAAAAAGTGCCTCCTATGAGTCCAATAGTCTTTGTATACT
TCCCTCTTTTGAACCGTACACCAAATCCTTCCCTGCCGTCCCTCCCCTCC
CTCACTTTCGCTTGGCCACCCGCCTTGTACCCACCCTGTGGAAAAGATGG
CGAAGCGGTTATGCCTGCATGCAGATGAAGATGAGAATAGAAGAGAGAGC
GGAGAAGGGAGAACAAGCAATCAAATGTCCTTGATAATACAGCTCAAACT
CATATCGTTGCTCTTTACTTTCTTTGATTTTCCTATCCCACGATGGGATC
GTGGGATGAGTATCGGGTACTTTCTAGTTCTTAATTCGATTTGAATTTCT
TTTTCCTATAAATCGCGTACATATGTGTGAAATTTCAAAATACCATTACT
TTCCTATCACTCTCATTCGCACACACGCAAACACACACACTCACACCCGT
ACACACACGCAGGCACTCACACACGCACATGTGCGTACAATAACTCAACA
TTTTTTCGCCGTCATTGCCTCAATAGTTGTCGCCAATGCCACACCTCCAT
CTTATTATCTCATTGCTACTACTATTTACTCCCCACCCACCCATCCTC
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Coding sequence (CDS) from alignment at chr9:594298..595845+

>NO09G01910.1 ID=NO09G01910.1|Name=NO09G01910.1|organism=Nannochloropsis oceanica|type=CDS|length=459bp|location=Sequence derived from alignment at chr9:594298..595845+ (Nannochloropsis oceanica)
ATGTTTGTCGCCCGGTCCTCTTTGCTGTGCGTCGTGGCCGTCGTCCTTGC
TTGCGTTTCCCAGGCCTTCATTATCCCAGCCCCAGCCCCAGTCTCTGCCC
CGTCGGTCCGCCATAGCCGCAGTCGGATGGCGCCTTTGCAAATGGGTTTT
TTCGACTCCATTAAGAAAGGTTTTGAGAACGAGGCACAAGTCCAACCGGC
ACCCAATGCCGGCCTCAAGAATGGCCCCCCCATTGTGACCATTACGTTTC
TCCCCGCCAACAAGAAAGTCCAAGCCGTGGCCGGGCAAAACTTGAAAGAC
GTCGCTCTTGCCGCCAAGATTCCCATCAAGTACAACTGCAAAAAAGGGGA
GTGCGGGACTTGCGAGATCGATTTGAATGGGAAAAAGGTCAGGACATGTG
TCGGCATTGTGCCCCGTGGGGCCCGTAAGAATGAAGTGACAATCAAGGTG
CTCAAGTAA
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Synonyms
Publications