NO09G01870, NO09G01870 (gene) Nannochloropsis oceanica

Overview
NameNO09G01870
Unique NameNO09G01870
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3310
Alignment locationchr9:582959..586268 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:582959..586268 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036322WD40_repeat_dom_sf
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO09G01870 vs. NCBI_GenBank
Match: EWM27604.1 (hypothetical protein Naga_100069g5 [Nannochloropsis gaditana])

HSP 1 Score: 350.5 bits (898), Expect = 1.300e-92
Identity = 244/691 (35.31%), Postives = 344/691 (49.78%), Query Frame = 0 
Query:   12 LLLIIVLSPSSAWKFGGGIKSTT-GSAVINSKSSSSLQALDEELAELAELIRLQTTKLRLLEAYRRHVAAGAIEGEGRDTKTSQCMEPVFESSTLSLSGSSNGGTGNALAEDYLVRLAALPGTGNMKGGTESTEAGKNSRVTAVKLLTLQRARDKAAPRGSHMQFSKAVNVLVVARADTADNTKAGKRSDDSIASNISCRA--SSLYFYDLKGQLLSQYTPVGHSSAAITSIAFEAVDGEDALMVTGGRDGSLSLHNVQLWKDGKIIAGRRKILSSESFSSPPFFAVPPNITSSDGFGMQIAHEATLLPLDAQTKEDVSALPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLYQHRSYGWLVFSGDAAGNIQCHFRNGTLFKAIDTGQLVYALIRNGKTLLYTADRDVHFLSAMTLEPYRTAYCLGRHGPLISLAWDSFSPQVLHASSAQGDILSFDTSPPHARRGHPYQQQQPMYG--GAAAEGNCALLKKLASRTGGSAPVSLATVPGGYLLAVSMRGNIFAYNTTGLRDTASPLPLVFQLKFPXXXXXXXXXXXXXXXXXXXXXXXXXXXRISPTFVVYMGLGTSGNPLIDKHASLRDDGGQLVLFEAILPYRRPKGLEFNWIRLPLICLALGLVFFWHFSKERRGKRLGLA-MNPIQEGAQLGNIGLRPSGRRMYDLMEE 697
            L+L+I+  P+ A +FG   K TT GS+   S +   LQ LDEE+A L +LIRLQ+ +L+ LE  R+ VA    E  G  +   Q     F  S     G +   +   +AEDYL+RL AL          E      N  VTA+K+L+ Q   D         Q ++   + ++A A T D     ++ ++ I     CR   S L FYDL+G L+  Y P+  + + IT++AFE V  ++A++V G +DGSLSLH VQLW+ G+  AG++  + S S S   F  +P N TS DG G+ + HE TL   D  +KE                                         LL+++R++G ++ SG+ AG IQ H RNGTLFK + TGQ +YA+IR+   L YTA  DV  L+A TLE     YC G+HG L SL  DS  PQ+LHA++AQGD+L+F    P +RR  PYQ Q  +Y     AAEG+C L+KK ASR+   A               S  G       T    TAS     F  + P                                FV+ MG  ++ N  ++     RD   ++V+FEA+LP++R + L+ +WIR+  + +A+GLVF WHFSK  R KR GLA +      A L +IG+RP  R +Y+L E+
Sbjct:   13 LILVIMTMPALALRFGWRNKPTTRGSS--ESATIPLLQTLDEEIATLGDLIRLQSDRLQRLERLRQQVAKARAEEVGDYSAGFQWTRSAFHPSCTDYGGGAR--STRHIAEDYLIRLGALSPAETWDEAVEEGAQRGNVHVTAIKMLSFQCTHDL-------FQGNRGGILNILAVACTNDEGGQPQKREECIGDGTKCRGRNSWLSFYDLRGDLIGSYIPLCENHSVITTLAFEMVTSDEAMLVVGAQDGSLSLHRVQLWRKGQTFAGKQPFMPSISSSIVNFPNMPHNTTSKDGLGIHVVHEGTLQLTDQSSKE-------------------------------AAHLASISCVLLHKNRAHGLMIISGNKAGKIQAHLRNGTLFKTVSTGQPIYAMIRHRNVLFYTAGSDVKSLNAKTLEQTTNTYCGGQHGALHSLVVDSLVPQILHAATAQGDLLTFRLM-PKSRRSQPYQSQH-VYADTSGAAEGSCKLIKKFASRSEDCA---------------SNDGMHLNNLITATEMTASEGGTAFNTRSPC------------------------------NFVILMGKPSNWN--LETKLPPRDHVNEIVIFEALLPHQRSQPLDLSWIRVYFMIIAVGLVFAWHFSKGGRSKRPGLAGLEGDSRPAHLNSIGMRPHRRHLYNLTED 612
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BLAST of NO09G01870 vs. NCBI_GenBank
Match: XP_009041705.1 (hypothetical protein AURANDRAFT_67862 [Aureococcus anophagefferens] >EGB03630.1 hypothetical protein AURANDRAFT_67862 [Aureococcus anophagefferens])

HSP 1 Score: 76.3 bits (186), Expect = 4.600e-10
Identity = 84/342 (24.56%), Postives = 137/342 (40.06%), Query Frame = 0 
Query:  213 SLYFYDLKGQLLSQYTPVGHSSAAITSIAFEAVDGEDALMVTGGRDGSLSLHNVQLWKDGKIIAGRR--------KILSSESFSSPPFFAVPPNITSSDGFGMQIAHEATLLPLDAQTKEDVSALPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLYQHRSYGWLVFSGDAAGNIQCHFRNGTL---FKAIDTGQLVYALIRNGKTLLYTADRDVHFLSA--MTLEPYRTAYCLGRHGPLISLAWDSFSPQVLHASSAQGDILSFDTSPPHARRGHPYQQQQPMYGGAAAEGNCALLKKLASRTGGSAPVSLATVPGGYLLAVSMRGNIFAYNTT 542
            ++ F+D  G++++     GH +  + ++AF+    E+ ++ T G  G +  +N+ LW+D  ++AGRR                           + SS G G+ +  EAT+ P  A  ++   +                                      L+  R  G  V + D  G+++ + RNGT       + T   + AL R+G          V F+S+    L P   A C G    +  +A+D+ +P VLH +   G++L+F+T    AR+G          GGA A   C L  KL S +   AP  LAT  G   L  S    +  +NTT
Sbjct:  215 TIAFHDAAGEVVAA-VDTGH-AGGVAAVAFDG--AEEPVLATAGAGGEVQFYNLTLWQDDAVLAGRRXXXXXXXXXXXXXXXXXXXXXXXXXXXLRSSSGLGLVVRPEATVAPAFAPVEQPDGSYESSLARVAHLQ--------------------------LFTWRGSGKFVAAADDLGSVRIYARNGTKQGEVAVVATDAPITALKRSGSAFAVADGAVVRFVSSSRWRLSP---AVCRGPPATVSDVAFDALNPGVLHVAYETGELLAFNT---RARQGD---------GGAPA---CRLTTKLPS-SPHVAPPKLATTKG--FLVSSSAHFLAIHNTT 505
The following BLAST results are available for this feature:
BLAST of NO09G01870 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM27604.11.300e-9235.31hypothetical protein Naga_100069g5 [Nannochloropsi... [more]
XP_009041705.14.600e-1024.56hypothetical protein AURANDRAFT_67862 [Aureococcus... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL121nonsL121Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL120nonsL120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR128ngnoR128Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010686NSK010686Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G01870.2NO09G01870.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO09G01870.1NO09G01870.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588867gene_4364Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100069g5gene2944Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G01870.2NO09G01870.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO09G01870.1NO09G01870.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G01870 ID=NO09G01870|Name=NO09G01870|organism=Nannochloropsis oceanica|type=gene|length=3310bp
GCCGAAGGTCGTGCGAATAGGTGACCGGAGCAGCGGCACGATCATGTGGT
GTCTTGGGCGCGGAACATCGAGTTACTGCTTGTGACGGTAATAATGACGA
AACTGGGATCGGCACAGCAGGCCACCTTAAGGCGGGCAGCAAGGGCAACA
AAATCAATGATTTGACCAACACGACCCGTGAAAGTTTCGGTAGCATGTGT
CTGTGGGCGTCTAAACACGGGTGCAATATTTCGAATGTAGACAATATGTG
TGAGCTCCGCGTCCGAGTCGACTCGCCGACCTCCTGCCTCCTGCCCATTT
CTGTGTGTTATCACAAGCACTTACTACAAGCCAAACTTCACTTTCACTTG
AAAACCACGAATAAAAAAATACAGGAAGAAGACGAAGACATTAAGGAGAA
AGTGTCCGTAAATCCGGCACCGCGTTCCTCAGGAGGTGTCATCGTCGCTT
GCCTTTGATAAAAATAACCGACAGCCGACAGCGCGCTTGGAGGAGCAGAA
GCTCCCTGTGCAAGCACTGACCCAAGCCCCAGGGGTCCTACGACTACGAT
GGCCAGAAACTATTGCACCTTTCAGCCTCTTCTCCTGTTAATTATTGTCT
TGTCGCCATCGTCAGCCTGGgtaagtactgatgatgtacatacagcttaa
aaacagcccgccccctttgagacccaaccgctcccattcttctcttgata
cccttccagAAATTCGGTGGGGGTATTAAATCCACCACCGGTAGTGCCGT
TATCAATAGCAAAAGCAGCTCATCCCTTCAAGCCTTAGATGAAGAGCTTG
CCGAGCTAGCAGAACTCATTCGTTTACAGACCACGAAGCTCCGCCTGCTA
GAGGCCTACCGAAGGCATGTCGCCGCCGGGGCCATTGAAGGCGAAGGAAG
GGATACCAAAACCTCACAATGCATGGAACCTGTCTTTGAGTCATCAACCC
TGTCGCTCAGCGGCAGCAGTAACGGCGGCACAGGTAACGCTCTGGCCGAG
GATTATCTCGTGCGATTGGCTGCCTTGCCTGGGACCGGGAATATGAAAGG
GGGTACAGAAAGCACTGAGGCAGGCAAGAATAGCCGAGTGACTGCAGTGA
AGTTGCTTACACTCCAGCGGGCCCGAGATAAGGCGGCGCCACGAGGTAGC
CACATGCAGTTCAGCAAGGCCGTGAACGTGCTTGTTGTTGCACGCGCCGA
TACAGCCGATAACACGAAGGCAGGAAAGCGGAGCGATGACAGCATCGCAA
GTAACATCAGCTGTCGCGCTTCTTCGCTTTACTTCTACGACCTCAAAGGT
CAGCTCCTAAGTCAGTACACTCCGGTTGGTCATTCTAGTGCAGCCATAAC
CTCTATAGCGTTTGAGGCAGTCGACGGAGAGGACGCCCTGATGGTTACGG
GGGGACGGGACGGTTCCCTGAGCCTACACAATGTTCAGCTATGGAAAGAT
GGCAAAATCATCGCGGGAAGAAGAAAAATTCTTTCTTCAGAGTCGTTTTC
AAGCCCTCCCTTCTTTGCTGTACCTCCCAATATTACTTCTTCAGATGGGT
TCGGAATGCAAATAGCGCACGAGGCCACCTTGCTGCCGTTAGACGCCCAA
ACGAAGGAGGACGTATCAGCTTTACCACCACCAGTCAAAGCCCAAACGAA
GGAGGGCATATCAGCTTTACAACCACCAGTCAAAGCCCGTGAAACAGCGG
CGACAAGCGCAGGCTCACCGGTGTTGAGCGCGCTTCTATACCAGCATCGA
AGCTATGGCTGGTTGGTGTTTTCTGGGGATGCAGCCGGCAACATTCAGTG
CCATTTCCGAAACGGGACTTTGTTCAAGgtagggactaaaataaaaatgc
aatagcactcaaaggcttgttttcattgattggacattcttcagataaat
aagaacactgaagcttctggtttcagtttttccaatgagcacgcacttta
cagactctaaacccacttttttactcacagGCGATCGACACGGGCCAGCT
CGTCTACGCCCTAATAAGAAACGGCAAAACCCTTTTATACACTGCTGACA
Ggtaagcgggagctgattaataaagactacaattttaaagattgtgggtt
tcgtaagcatgccacgcgtgttccttttcaacacagGGACGTGCACTTCC
TGAGCGCCATGACTCTGGAACCATACAGGACTGCTTATTGCCTCGGACGA
CACGGACCCTTGATTTCTTTGGCCTGGGATTCTTTCTCCCCACAAGTTCT
GCACGCCTCCTCGGCTCAAGGCGACATATTGTCCTTCGATACTAGCCCAC
CTCACGCGCGGCGGGGACATCCCTACCAGCAGCAGCAGCCTATGTATGGT
GGAGCTGCAGCTGAAGGCAACTGCGCCTTGCTAAAAAAACTGGCTTCACG
CACCGGAGgtaagagcagggagcgtgtgaagattaaagattgattttgta
gtgccgcagaggtatgaaattgtgagcgttaagttcggagatggtctgat
gacagagtctgtggattaatgttcattacatcccctttttcccaaatccc
aaaaaaaaatgacacgcgatatacaagGCTCCGCGCCCGTATCTCTTGCA
ACAGTACCCGGTGGTTACTTACTGGCTGTCTCCATGCGTGGGAACATCTT
TGCATATAACACAACTGGACTACGCGACACCGCCTCGCCGTTGCCGTTGG
TCTTTCAACTTAAGTTTCCTCCTCCCCCTGCTTTATCGAAAGAAGAGGAG
AGTCCTAGGATTATCTTTTCGACAAATGGTGGTGGTGCCGGGTCTTCCAG
TCGCATATCCCCCACCTTTGTCGTGTACATGGGCCTAGGGACAAGCGGGA
ACCCATTAATAGATAAGCACGCAAGTCTAAGGGACGACGGTGGACAACTG
GTGCTGTTTGAAGCCATATTGCCCTACCGTAGACCCAAGGGTTTGGAATT
CAATTGGATTCGTCTTCCACTCATTTGCCTGGCATTAGGTCTGGTCTTCT
TTTGGCACTTCTCGAAAGAAAGACGAGGCAAGCGGCTCGGACTAGCTATG
AATCCCATACAAGAGGGAGCGCAGCTGGGCAACATTGGACTACGGCCCAG
TGGAAGACGGATGTATGACCTGATGGAAGAAGATGAGGATGGTCAGGAGG
AGCGCGAAGACGAACCTGGATGGAGGGCAGGGGCAGACGACGACGACGAC
GAGCAAAATCGCCAATTGCGCGGACTCTTGCGGGCACGCCAAGCGCGGAA
CTTTGCATTTTGACCATAATCATATACAAAGAAAGTATATTAGCCTTGTG
TCAAAACTTA
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protein sequence of NO09G01870.2

>NO09G01870.2-protein ID=NO09G01870.2-protein|Name=NO09G01870.2|organism=Nannochloropsis oceanica|type=polypeptide|length=645bp
MEPVFESSTLSLSGSSNGGTGNALAEDYLVRLAALPGTGNMKGGTESTEA
GKNSRVTAVKLLTLQRARDKAAPRGSHMQFSKAVNVLVVARADTADNTKA
GKRSDDSIASNISCRASSLYFYDLKGQLLSQYTPVGHSSAAITSIAFEAV
DGEDALMVTGGRDGSLSLHNVQLWKDGKIIAGRRKILSSESFSSPPFFAV
PPNITSSDGFGMQIAHEATLLPLDAQTKEDVSALPPPVKAQTKEGISALQ
PPVKARETAATSAGSPVLSALLYQHRSYGWLVFSGDAAGNIQCHFRNGTL
FKAIDTGQLVYALIRNGKTLLYTADRDVHFLSAMTLEPYRTAYCLGRHGP
LISLAWDSFSPQVLHASSAQGDILSFDTSPPHARRGHPYQQQQPMYGGAA
AEGNCALLKKLASRTGGSAPVSLATVPGGYLLAVSMRGNIFAYNTTGLRD
TASPLPLVFQLKFPPPPALSKEEESPRIIFSTNGGGAGSSSRISPTFVVY
MGLGTSGNPLIDKHASLRDDGGQLVLFEAILPYRRPKGLEFNWIRLPLIC
LALGLVFFWHFSKERRGKRLGLAMNPIQEGAQLGNIGLRPSGRRMYDLME
EDEDGQEEREDEPGWRAGADDDDDEQNRQLRGLLRARQARNFAF*
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protein sequence of NO09G01870.1

>NO09G01870.1-protein ID=NO09G01870.1-protein|Name=NO09G01870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=740bp
MARNYCTFQPLLLLIIVLSPSSAWKFGGGIKSTTGSAVINSKSSSSLQAL
DEELAELAELIRLQTTKLRLLEAYRRHVAAGAIEGEGRDTKTSQCMEPVF
ESSTLSLSGSSNGGTGNALAEDYLVRLAALPGTGNMKGGTESTEAGKNSR
VTAVKLLTLQRARDKAAPRGSHMQFSKAVNVLVVARADTADNTKAGKRSD
DSIASNISCRASSLYFYDLKGQLLSQYTPVGHSSAAITSIAFEAVDGEDA
LMVTGGRDGSLSLHNVQLWKDGKIIAGRRKILSSESFSSPPFFAVPPNIT
SSDGFGMQIAHEATLLPLDAQTKEDVSALPPPVKAQTKEGISALQPPVKA
RETAATSAGSPVLSALLYQHRSYGWLVFSGDAAGNIQCHFRNGTLFKAID
TGQLVYALIRNGKTLLYTADRDVHFLSAMTLEPYRTAYCLGRHGPLISLA
WDSFSPQVLHASSAQGDILSFDTSPPHARRGHPYQQQQPMYGGAAAEGNC
ALLKKLASRTGGSAPVSLATVPGGYLLAVSMRGNIFAYNTTGLRDTASPL
PLVFQLKFPPPPALSKEEESPRIIFSTNGGGAGSSSRISPTFVVYMGLGT
SGNPLIDKHASLRDDGGQLVLFEAILPYRRPKGLEFNWIRLPLICLALGL
VFFWHFSKERRGKRLGLAMNPIQEGAQLGNIGLRPSGRRMYDLMEEDEDG
QEEREDEPGWRAGADDDDDEQNRQLRGLLRARQARNFAF*
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Synonyms
Publications