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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr9 | genome | chr9:582959..586268 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO09G01870.1 vs.
Match: EWM27604.1 (hypothetical protein Naga_100069g5 [Nannochloropsis gaditana]) HSP 1 Score: 291.6 bits (745), Expect = 6.900e-75 Identity = 194/504 (38.49%), Postives = 270/504 (53.57%), Query Frame = 0
Query: 12 LLLIIVLSPSSAWKFGGGIKSTT-GSAVINSKSSSSLQALDEELAELAELIRLQTTKLRLLEAYRRHVAAGAIEGEGRDTKTSQCMEPVFESSTLSLSGSSNGGTGNALAEDYLVRLAALPGTGNMKGGTESTEAGKNSRVTAVKLLTLQRARDKAAPRGSHMQFSKAVNVLVVARADTADNTKAGKRSDDSIASNISCRA--SSLYFYDLKGQLLSQYTPVGHSSAAITSIAFEAVDGEDALMVTGGRDGSLSLHNVQLWKDGKIIAGRRKILSSESFSSPPFFAVPPNITSSDGFGMQIAHEATLLPLDAQTKEDVSALPPPVKAQTKEGISALQPPVKARETAATSAGSPVLSALLYQHRSYGWLVFSGDAAGNIQCHFRNGTLFKAIDTGQLVYALIRNGKTLLYTADRDVHFLSAMTLEPYRTAYCLGRHGPLISLAWDSFSPQVLHASSAQGDILSFDTSPPHARRGHPYQQQQPMYG--GAAAEGNCALLKKLASRT 511
L+L+I+ P+ A +FG K TT GS+ S + LQ LDEE+A L +LIRLQ+ +L+ LE R+ VA E G + Q F S G + + +AEDYL+RL AL E N VTA+K+L+ Q D Q ++ + ++A A T D ++ ++ I CR S L FYDL+G L+ Y P+ + + IT++AFE V ++A++V G +DGSLSLH VQLW+ G+ AG++ + S S S F +P N TS DG G+ + HE TL D +KE A A+ S LL+++R++G ++ SG+ AG IQ H RNGTLFK + TGQ +YA+IR+ L YTA DV L+A TLE YC G+HG L SL DS PQ+LHA++AQGD+L+F P +RR PYQ Q +Y AAEG+C L+KK ASR+
Sbjct: 13 LILVIMTMPALALRFGWRNKPTTRGSS--ESATIPLLQTLDEEIATLGDLIRLQSDRLQRLERLRQQVAKARAEEVGDYSAGFQWTRSAFHPSCTDYGGGAR--STRHIAEDYLIRLGALSPAETWDEAVEEGAQRGNVHVTAIKMLSFQCTHDL-------FQGNRGGILNILAVACTNDEGGQPQKREECIGDGTKCRGRNSWLSFYDLRGDLIGSYIPLCENHSVITTLAFEMVTSDEAMLVVGAQDGSLSLHRVQLWRKGQTFAGKQPFMPSISSSIVNFPNMPHNTTSKDGLGIHVVHEGTLQLTDQSSKE-------------------------AAHLASISC------VLLHKNRAHGLMIISGNKAGKIQAHLRNGTLFKTVSTGQPIYAMIRHRNVLFYTAGSDVKSLNAKTLEQTTNTYCGGQHGALHSLVVDSLVPQILHAATAQGDLLTFRLM-PKSRRSQPYQSQH-VYADTSGAAEGSCKLIKKFASRS 472
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO09G01870.1 ID=NO09G01870.1|Name=NO09G01870.1|organism=Nannochloropsis oceanica|type=mRNA|length=2815bp GCCGAAGGTCGTGCGAATAGGTGACCGGAGCAGCGGCACGATCATGTGGT GTCTTGGGCGCGGAACATCGAGTTACTGCTTGTGACGGTAATAATGACGA AACTGGGATCGGCACAGCAGGCCACCTTAAGGCGGGCAGCAAGGGCAACA AAATCAATGATTTGACCAACACGACCCGTGAAAGTTTCGGTAGCATGTGT CTGTGGGCGTCTAAACACGGGTGCAATATTTCGAATGTAGACAATATGTG TGAGCTCCGCGTCCGAGTCGACTCGCCGACCTCCTGCCTCCTGCCCATTT CTGTGTGTTATCACAAGCACTTACTACAAGCCAAACTTCACTTTCACTTG AAAACCACGAATAAAAAAATACAGGAAGAAGACGAAGACATTAAGGAGAA AGTGTCCGTAAATCCGGCACCGCGTTCCTCAGGAGGTGTCATCGTCGCTT GCCTTTGATAAAAATAACCGACAGCCGACAGCGCGCTTGGAGGAGCAGAA GCTCCCTGTGCAAGCACTGACCCAAGCCCCAGGGGTCCTACGACTACGAT GGCCAGAAACTATTGCACCTTTCAGCCTCTTCTCCTGTTAATTATTGTCT TGTCGCCATCGTCAGCCTGGAAATTCGGTGGGGGTATTAAATCCACCACC GGTAGTGCCGTTATCAATAGCAAAAGCAGCTCATCCCTTCAAGCCTTAGA TGAAGAGCTTGCCGAGCTAGCAGAACTCATTCGTTTACAGACCACGAAGC TCCGCCTGCTAGAGGCCTACCGAAGGCATGTCGCCGCCGGGGCCATTGAA GGCGAAGGAAGGGATACCAAAACCTCACAATGCATGGAACCTGTCTTTGA GTCATCAACCCTGTCGCTCAGCGGCAGCAGTAACGGCGGCACAGGTAACG CTCTGGCCGAGGATTATCTCGTGCGATTGGCTGCCTTGCCTGGGACCGGG AATATGAAAGGGGGTACAGAAAGCACTGAGGCAGGCAAGAATAGCCGAGT GACTGCAGTGAAGTTGCTTACACTCCAGCGGGCCCGAGATAAGGCGGCGC CACGAGGTAGCCACATGCAGTTCAGCAAGGCCGTGAACGTGCTTGTTGTT GCACGCGCCGATACAGCCGATAACACGAAGGCAGGAAAGCGGAGCGATGA CAGCATCGCAAGTAACATCAGCTGTCGCGCTTCTTCGCTTTACTTCTACG ACCTCAAAGGTCAGCTCCTAAGTCAGTACACTCCGGTTGGTCATTCTAGT GCAGCCATAACCTCTATAGCGTTTGAGGCAGTCGACGGAGAGGACGCCCT GATGGTTACGGGGGGACGGGACGGTTCCCTGAGCCTACACAATGTTCAGC TATGGAAAGATGGCAAAATCATCGCGGGAAGAAGAAAAATTCTTTCTTCA GAGTCGTTTTCAAGCCCTCCCTTCTTTGCTGTACCTCCCAATATTACTTC TTCAGATGGGTTCGGAATGCAAATAGCGCACGAGGCCACCTTGCTGCCGT TAGACGCCCAAACGAAGGAGGACGTATCAGCTTTACCACCACCAGTCAAA GCCCAAACGAAGGAGGGCATATCAGCTTTACAACCACCAGTCAAAGCCCG TGAAACAGCGGCGACAAGCGCAGGCTCACCGGTGTTGAGCGCGCTTCTAT ACCAGCATCGAAGCTATGGCTGGTTGGTGTTTTCTGGGGATGCAGCCGGC AACATTCAGTGCCATTTCCGAAACGGGACTTTGTTCAAGGCGATCGACAC GGGCCAGCTCGTCTACGCCCTAATAAGAAACGGCAAAACCCTTTTATACA CTGCTGACAGGGACGTGCACTTCCTGAGCGCCATGACTCTGGAACCATAC AGGACTGCTTATTGCCTCGGACGACACGGACCCTTGATTTCTTTGGCCTG GGATTCTTTCTCCCCACAAGTTCTGCACGCCTCCTCGGCTCAAGGCGACA TATTGTCCTTCGATACTAGCCCACCTCACGCGCGGCGGGGACATCCCTAC CAGCAGCAGCAGCCTATGTATGGTGGAGCTGCAGCTGAAGGCAACTGCGC CTTGCTAAAAAAACTGGCTTCACGCACCGGAGGCTCCGCGCCCGTATCTC TTGCAACAGTACCCGGTGGTTACTTACTGGCTGTCTCCATGCGTGGGAAC ATCTTTGCATATAACACAACTGGACTACGCGACACCGCCTCGCCGTTGCC GTTGGTCTTTCAACTTAAGTTTCCTCCTCCCCCTGCTTTATCGAAAGAAG AGGAGAGTCCTAGGATTATCTTTTCGACAAATGGTGGTGGTGCCGGGTCT TCCAGTCGCATATCCCCCACCTTTGTCGTGTACATGGGCCTAGGGACAAG CGGGAACCCATTAATAGATAAGCACGCAAGTCTAAGGGACGACGGTGGAC AACTGGTGCTGTTTGAAGCCATATTGCCCTACCGTAGACCCAAGGGTTTG GAATTCAATTGGATTCGTCTTCCACTCATTTGCCTGGCATTAGGTCTGGT CTTCTTTTGGCACTTCTCGAAAGAAAGACGAGGCAAGCGGCTCGGACTAG CTATGAATCCCATACAAGAGGGAGCGCAGCTGGGCAACATTGGACTACGG CCCAGTGGAAGACGGATGTATGACCTGATGGAAGAAGATGAGGATGGTCA GGAGGAGCGCGAAGACGAACCTGGATGGAGGGCAGGGGCAGACGACGACG ACGACGAGCAAAATCGCCAATTGCGCGGACTCTTGCGGGCACGCCAAGCG CGGAACTTTGCATTTTGACCATAATCATATACAAAGAAAGTATATTAGCC TTGTGTCAAAACTTA back to topprotein sequence of NO09G01870.1 >NO09G01870.1-protein ID=NO09G01870.1-protein|Name=NO09G01870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=740bp MARNYCTFQPLLLLIIVLSPSSAWKFGGGIKSTTGSAVINSKSSSSLQAL DEELAELAELIRLQTTKLRLLEAYRRHVAAGAIEGEGRDTKTSQCMEPVF ESSTLSLSGSSNGGTGNALAEDYLVRLAALPGTGNMKGGTESTEAGKNSR VTAVKLLTLQRARDKAAPRGSHMQFSKAVNVLVVARADTADNTKAGKRSD DSIASNISCRASSLYFYDLKGQLLSQYTPVGHSSAAITSIAFEAVDGEDA LMVTGGRDGSLSLHNVQLWKDGKIIAGRRKILSSESFSSPPFFAVPPNIT SSDGFGMQIAHEATLLPLDAQTKEDVSALPPPVKAQTKEGISALQPPVKA RETAATSAGSPVLSALLYQHRSYGWLVFSGDAAGNIQCHFRNGTLFKAID TGQLVYALIRNGKTLLYTADRDVHFLSAMTLEPYRTAYCLGRHGPLISLA WDSFSPQVLHASSAQGDILSFDTSPPHARRGHPYQQQQPMYGGAAAEGNC ALLKKLASRTGGSAPVSLATVPGGYLLAVSMRGNIFAYNTTGLRDTASPL PLVFQLKFPPPPALSKEEESPRIIFSTNGGGAGSSSRISPTFVVYMGLGT SGNPLIDKHASLRDDGGQLVLFEAILPYRRPKGLEFNWIRLPLICLALGL VFFWHFSKERRGKRLGLAMNPIQEGAQLGNIGLRPSGRRMYDLMEEDEDG QEEREDEPGWRAGADDDDDEQNRQLRGLLRARQARNFAF* back to topmRNA from alignment at chr9:582959..586268- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO09G01870.1 ID=NO09G01870.1|Name=NO09G01870.1|organism=Nannochloropsis oceanica|type=mRNA|length=3310bp|location=Sequence derived from alignment at chr9:582959..586268- (Nannochloropsis oceanica) GCCGAAGGTCGTGCGAATAGGTGACCGGAGCAGCGGCACGATCATGTGGT
GTCTTGGGCGCGGAACATCGAGTTACTGCTTGTGACGGTAATAATGACGA
AACTGGGATCGGCACAGCAGGCCACCTTAAGGCGGGCAGCAAGGGCAACA
AAATCAATGATTTGACCAACACGACCCGTGAAAGTTTCGGTAGCATGTGT
CTGTGGGCGTCTAAACACGGGTGCAATATTTCGAATGTAGACAATATGTG
TGAGCTCCGCGTCCGAGTCGACTCGCCGACCTCCTGCCTCCTGCCCATTT
CTGTGTGTTATCACAAGCACTTACTACAAGCCAAACTTCACTTTCACTTG
AAAACCACGAATAAAAAAATACAGGAAGAAGACGAAGACATTAAGGAGAA
AGTGTCCGTAAATCCGGCACCGCGTTCCTCAGGAGGTGTCATCGTCGCTT
GCCTTTGATAAAAATAACCGACAGCCGACAGCGCGCTTGGAGGAGCAGAA
GCTCCCTGTGCAAGCACTGACCCAAGCCCCAGGGGTCCTACGACTACGAT
GGCCAGAAACTATTGCACCTTTCAGCCTCTTCTCCTGTTAATTATTGTCT
TGTCGCCATCGTCAGCCTGGGTAAGTACTGATGATGTACATACAGCTTAA
AAACAGCCCGCCCCCTTTGAGACCCAACCGCTCCCATTCTTCTCTTGATA
CCCTTCCAGAAATTCGGTGGGGGTATTAAATCCACCACCGGTAGTGCCGT
TATCAATAGCAAAAGCAGCTCATCCCTTCAAGCCTTAGATGAAGAGCTTG
CCGAGCTAGCAGAACTCATTCGTTTACAGACCACGAAGCTCCGCCTGCTA
GAGGCCTACCGAAGGCATGTCGCCGCCGGGGCCATTGAAGGCGAAGGAAG
GGATACCAAAACCTCACAATGCATGGAACCTGTCTTTGAGTCATCAACCC
TGTCGCTCAGCGGCAGCAGTAACGGCGGCACAGGTAACGCTCTGGCCGAG
GATTATCTCGTGCGATTGGCTGCCTTGCCTGGGACCGGGAATATGAAAGG
GGGTACAGAAAGCACTGAGGCAGGCAAGAATAGCCGAGTGACTGCAGTGA
AGTTGCTTACACTCCAGCGGGCCCGAGATAAGGCGGCGCCACGAGGTAGC
CACATGCAGTTCAGCAAGGCCGTGAACGTGCTTGTTGTTGCACGCGCCGA
TACAGCCGATAACACGAAGGCAGGAAAGCGGAGCGATGACAGCATCGCAA
GTAACATCAGCTGTCGCGCTTCTTCGCTTTACTTCTACGACCTCAAAGGT
CAGCTCCTAAGTCAGTACACTCCGGTTGGTCATTCTAGTGCAGCCATAAC
CTCTATAGCGTTTGAGGCAGTCGACGGAGAGGACGCCCTGATGGTTACGG
GGGGACGGGACGGTTCCCTGAGCCTACACAATGTTCAGCTATGGAAAGAT
GGCAAAATCATCGCGGGAAGAAGAAAAATTCTTTCTTCAGAGTCGTTTTC
AAGCCCTCCCTTCTTTGCTGTACCTCCCAATATTACTTCTTCAGATGGGT
TCGGAATGCAAATAGCGCACGAGGCCACCTTGCTGCCGTTAGACGCCCAA
ACGAAGGAGGACGTATCAGCTTTACCACCACCAGTCAAAGCCCAAACGAA
GGAGGGCATATCAGCTTTACAACCACCAGTCAAAGCCCGTGAAACAGCGG
CGACAAGCGCAGGCTCACCGGTGTTGAGCGCGCTTCTATACCAGCATCGA
AGCTATGGCTGGTTGGTGTTTTCTGGGGATGCAGCCGGCAACATTCAGTG
CCATTTCCGAAACGGGACTTTGTTCAAGGTAGGGACTAAAATAAAAATGC
AATAGCACTCAAAGGCTTGTTTTCATTGATTGGACATTCTTCAGATAAAT
AAGAACACTGAAGCTTCTGGTTTCAGTTTTTCCAATGAGCACGCACTTTA
CAGACTCTAAACCCACTTTTTTACTCACAGGCGATCGACACGGGCCAGCT
CGTCTACGCCCTAATAAGAAACGGCAAAACCCTTTTATACACTGCTGACA
GGTAAGCGGGAGCTGATTAATAAAGACTACAATTTTAAAGATTGTGGGTT
TCGTAAGCATGCCACGCGTGTTCCTTTTCAACACAGGGACGTGCACTTCC
TGAGCGCCATGACTCTGGAACCATACAGGACTGCTTATTGCCTCGGACGA
CACGGACCCTTGATTTCTTTGGCCTGGGATTCTTTCTCCCCACAAGTTCT
GCACGCCTCCTCGGCTCAAGGCGACATATTGTCCTTCGATACTAGCCCAC
CTCACGCGCGGCGGGGACATCCCTACCAGCAGCAGCAGCCTATGTATGGT
GGAGCTGCAGCTGAAGGCAACTGCGCCTTGCTAAAAAAACTGGCTTCACG
CACCGGAGGTAAGAGCAGGGAGCGTGTGAAGATTAAAGATTGATTTTGTA
GTGCCGCAGAGGTATGAAATTGTGAGCGTTAAGTTCGGAGATGGTCTGAT
GACAGAGTCTGTGGATTAATGTTCATTACATCCCCTTTTTCCCAAATCCC
AAAAAAAAATGACACGCGATATACAAGGCTCCGCGCCCGTATCTCTTGCA
ACAGTACCCGGTGGTTACTTACTGGCTGTCTCCATGCGTGGGAACATCTT
TGCATATAACACAACTGGACTACGCGACACCGCCTCGCCGTTGCCGTTGG
TCTTTCAACTTAAGTTTCCTCCTCCCCCTGCTTTATCGAAAGAAGAGGAG
AGTCCTAGGATTATCTTTTCGACAAATGGTGGTGGTGCCGGGTCTTCCAG
TCGCATATCCCCCACCTTTGTCGTGTACATGGGCCTAGGGACAAGCGGGA
ACCCATTAATAGATAAGCACGCAAGTCTAAGGGACGACGGTGGACAACTG
GTGCTGTTTGAAGCCATATTGCCCTACCGTAGACCCAAGGGTTTGGAATT
CAATTGGATTCGTCTTCCACTCATTTGCCTGGCATTAGGTCTGGTCTTCT
TTTGGCACTTCTCGAAAGAAAGACGAGGCAAGCGGCTCGGACTAGCTATG
AATCCCATACAAGAGGGAGCGCAGCTGGGCAACATTGGACTACGGCCCAG
TGGAAGACGGATGTATGACCTGATGGAAGAAGATGAGGATGGTCAGGAGG
AGCGCGAAGACGAACCTGGATGGAGGGCAGGGGCAGACGACGACGACGAC
GAGCAAAATCGCCAATTGCGCGGACTCTTGCGGGCACGCCAAGCGCGGAA
CTTTGCATTTTGACCATAATCATATACAAAGAAAGTATATTAGCCTTGTG
TCAAAACTTA back to topCoding sequence (CDS) from alignment at chr9:582959..586268- >NO09G01870.1 ID=NO09G01870.1|Name=NO09G01870.1|organism=Nannochloropsis oceanica|type=CDS|length=2220bp|location=Sequence derived from alignment at chr9:582959..586268- (Nannochloropsis oceanica) ATGGCCAGAAACTATTGCACCTTTCAGCCTCTTCTCCTGTTAATTATTGT CTTGTCGCCATCGTCAGCCTGGAAATTCGGTGGGGGTATTAAATCCACCA CCGGTAGTGCCGTTATCAATAGCAAAAGCAGCTCATCCCTTCAAGCCTTA GATGAAGAGCTTGCCGAGCTAGCAGAACTCATTCGTTTACAGACCACGAA GCTCCGCCTGCTAGAGGCCTACCGAAGGCATGTCGCCGCCGGGGCCATTG AAGGCGAAGGAAGGGATACCAAAACCTCACAATGCATGGAACCTGTCTTT GAGTCATCAACCCTGTCGCTCAGCGGCAGCAGTAACGGCGGCACAGGTAA CGCTCTGGCCGAGGATTATCTCGTGCGATTGGCTGCCTTGCCTGGGACCG GGAATATGAAAGGGGGTACAGAAAGCACTGAGGCAGGCAAGAATAGCCGA GTGACTGCAGTGAAGTTGCTTACACTCCAGCGGGCCCGAGATAAGGCGGC GCCACGAGGTAGCCACATGCAGTTCAGCAAGGCCGTGAACGTGCTTGTTG TTGCACGCGCCGATACAGCCGATAACACGAAGGCAGGAAAGCGGAGCGAT GACAGCATCGCAAGTAACATCAGCTGTCGCGCTTCTTCGCTTTACTTCTA CGACCTCAAAGGTCAGCTCCTAAGTCAGTACACTCCGGTTGGTCATTCTA GTGCAGCCATAACCTCTATAGCGTTTGAGGCAGTCGACGGAGAGGACGCC CTGATGGTTACGGGGGGACGGGACGGTTCCCTGAGCCTACACAATGTTCA GCTATGGAAAGATGGCAAAATCATCGCGGGAAGAAGAAAAATTCTTTCTT CAGAGTCGTTTTCAAGCCCTCCCTTCTTTGCTGTACCTCCCAATATTACT TCTTCAGATGGGTTCGGAATGCAAATAGCGCACGAGGCCACCTTGCTGCC GTTAGACGCCCAAACGAAGGAGGACGTATCAGCTTTACCACCACCAGTCA AAGCCCAAACGAAGGAGGGCATATCAGCTTTACAACCACCAGTCAAAGCC CGTGAAACAGCGGCGACAAGCGCAGGCTCACCGGTGTTGAGCGCGCTTCT ATACCAGCATCGAAGCTATGGCTGGTTGGTGTTTTCTGGGGATGCAGCCG GCAACATTCAGTGCCATTTCCGAAACGGGACTTTGTTCAAGGCGATCGAC ACGGGCCAGCTCGTCTACGCCCTAATAAGAAACGGCAAAACCCTTTTATA CACTGCTGACAGGGACGTGCACTTCCTGAGCGCCATGACTCTGGAACCAT ACAGGACTGCTTATTGCCTCGGACGACACGGACCCTTGATTTCTTTGGCC TGGGATTCTTTCTCCCCACAAGTTCTGCACGCCTCCTCGGCTCAAGGCGA CATATTGTCCTTCGATACTAGCCCACCTCACGCGCGGCGGGGACATCCCT ACCAGCAGCAGCAGCCTATGTATGGTGGAGCTGCAGCTGAAGGCAACTGC GCCTTGCTAAAAAAACTGGCTTCACGCACCGGAGGCTCCGCGCCCGTATC TCTTGCAACAGTACCCGGTGGTTACTTACTGGCTGTCTCCATGCGTGGGA ACATCTTTGCATATAACACAACTGGACTACGCGACACCGCCTCGCCGTTG CCGTTGGTCTTTCAACTTAAGTTTCCTCCTCCCCCTGCTTTATCGAAAGA AGAGGAGAGTCCTAGGATTATCTTTTCGACAAATGGTGGTGGTGCCGGGT CTTCCAGTCGCATATCCCCCACCTTTGTCGTGTACATGGGCCTAGGGACA AGCGGGAACCCATTAATAGATAAGCACGCAAGTCTAAGGGACGACGGTGG ACAACTGGTGCTGTTTGAAGCCATATTGCCCTACCGTAGACCCAAGGGTT TGGAATTCAATTGGATTCGTCTTCCACTCATTTGCCTGGCATTAGGTCTG GTCTTCTTTTGGCACTTCTCGAAAGAAAGACGAGGCAAGCGGCTCGGACT AGCTATGAATCCCATACAAGAGGGAGCGCAGCTGGGCAACATTGGACTAC GGCCCAGTGGAAGACGGATGTATGACCTGATGGAAGAAGATGAGGATGGT CAGGAGGAGCGCGAAGACGAACCTGGATGGAGGGCAGGGGCAGACGACGA CGACGACGAGCAAAATCGCCAATTGCGCGGACTCTTGCGGGCACGCCAAG CGCGGAACTTTGCATTTTGA back to top
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