NO09G01850, NO09G01850 (gene) Nannochloropsis oceanica

Overview
NameNO09G01850
Unique NameNO09G01850
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length829
Alignment locationchr9:578011..578839 +

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Properties
Property NameValue
DescriptionNadh dehydrogenase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:578011..578839 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036748MTH938-like_sf
IPR007523NADH_Ub_cplx-1_asu_assmbl-fac3
Homology
[Close]
BLAST of NO09G01850 vs. NCBI_GenBank
Match: GAX98771.1 (Hypothetical protein PINS_006615 [Pythium insidiosum])

HSP 1 Score: 120.2 bits (300), Expect = 8.000e-24
Identity = 58/123 (47.15%), Postives = 77/123 (62.60%), Query Frame = 0 
Query:   85 GKDRTFLLGYDGGGFEVRDINYRGSILAMPSACFLWKPRNVEEITPESLTALMVVRPPIEILVVGTGEDSVNRPLAPATLAFLAANGVAVEHMDTTSACSTFNILNQEDRRVAAALLAVDTAA 208
            G  +  +  YD GGF V D+N RG +  +P    LWKPR  EEIT ESL    +  PP+EIL++G G   +   L P+   FL  NG+ VE++D+ +AC+TFNILN EDR+VAAA+L  D  A
Sbjct:   37 GTTKISVTEYDEGGFVVNDVNLRGGVALLPDIAMLWKPRRFEEITKESLEVFTIANPPVEILILGCGA-KIQHQLDPSIKEFLKVNGIVVEYLDSVNACATFNILNAEDRKVAAAILPWDPTA 158
[Close]
BLAST of NO09G01850 vs. NCBI_GenBank
Match: ETI39889.1 (hypothetical protein F443_14558 [Phytophthora parasitica P1569])

HSP 1 Score: 119.0 bits (297), Expect = 1.800e-23
Identity = 59/123 (47.97%), Postives = 76/123 (61.79%), Query Frame = 0 
Query:   85 GKDRTFLLGYDGGGFEVRDINYRGSILAMPSACFLWKPRNVEEITPESLTALMVVRPPIEILVVGTGEDSVNRPLAPATLAFLAANGVAVEHMDTTSACSTFNILNQEDRRVAAALLAVDTAA 208
            G  +  +  YD GGF + D+N RG +        LWKP+ +EEIT + L    V  PP+EILV+G GE  +N  LAP     L  NG+ VE++D+ +AC+TFNILN EDRRVAAALL  D  A
Sbjct:   40 GTAKVSVTEYDEGGFVINDVNMRGGVALFSEIAMLWKPKRIEEITRDHLAVFTVANPPVEILVLGCGE-RINHGLAPELKELLKTNGIVVEYLDSVNACATFNILNAEDRRVAAALLPYDPDA 161
[Close]
BLAST of NO09G01850 vs. NCBI_GenBank
Match: ETK80025.1 (hypothetical protein L915_14197 [Phytophthora parasitica] >ETL33446.1 hypothetical protein L916_14096 [Phytophthora parasitica] >ETO68638.1 hypothetical protein F444_14565 [Phytophthora parasitica P1976] >ETP09776.1 hypothetical protein F441_14427 [Phytophthora parasitica CJ01A1] >ETP37798.1 hypothetical protein F442_14391 [Phytophthora parasitica P10297])

HSP 1 Score: 119.0 bits (297), Expect = 1.800e-23
Identity = 59/123 (47.97%), Postives = 76/123 (61.79%), Query Frame = 0 
Query:   85 GKDRTFLLGYDGGGFEVRDINYRGSILAMPSACFLWKPRNVEEITPESLTALMVVRPPIEILVVGTGEDSVNRPLAPATLAFLAANGVAVEHMDTTSACSTFNILNQEDRRVAAALLAVDTAA 208
            G  +  +  YD GGF + D+N RG +        LWKP+ +EEIT + L    V  PP+EILV+G GE  +N  LAP     L  NG+ VE++D+ +AC+TFNILN EDRRVAAALL  D  A
Sbjct:   54 GTAKVSVTEYDEGGFVINDVNMRGGVALFSEIAMLWKPKRIEEITRDHLAVFTVANPPVEILVLGCGE-RINHGLAPELKELLKTNGIVVEYLDSVNACATFNILNAEDRRVAAALLPYDPDA 175
[Close]
BLAST of NO09G01850 vs. NCBI_GenBank
Match: XP_009823601.1 (hypothetical protein H257_01874 [Aphanomyces astaci] >ETV86802.1 hypothetical protein H257_01874 [Aphanomyces astaci])

HSP 1 Score: 117.1 bits (292), Expect = 6.700e-23
Identity = 58/124 (46.77%), Postives = 81/124 (65.32%), Query Frame = 0 
Query:   81 EEETGKDRTFLLGYDGGGFEVRDINYRGSILAMPSACFLWKPRNVEEITPESLTALMVVRPPIEILVVGTGEDSVNRPLAPATLAFLAANGVAVEHMDTTSACSTFNILNQEDRRVAAALLAVD 205
            E  T   +  +  YD GGF V ++N RGSI   P    +WKP+ ++EIT ESLT   V  PP+EILV+G G+  + R L P    +L  +G+ VE++D+ +AC+TFNILN EDR+VAAA+L V+
Sbjct:   30 EMMTDTQKVAITEYDEGGFVVNEVNLRGSIAVFPEIAMMWKPQTMDEITKESLTIFAVANPPVEILVLGCGK-RIPRLLEPELAEYLKFHGIVVEYVDSFNACATFNILNAEDRKVAAAILPVE 152
[Close]
BLAST of NO09G01850 vs. NCBI_GenBank
Match: XP_008866478.1 (hypothetical protein H310_04085 [Aphanomyces invadans] >ETW05040.1 hypothetical protein H310_04085 [Aphanomyces invadans])

HSP 1 Score: 117.1 bits (292), Expect = 6.700e-23
Identity = 57/124 (45.97%), Postives = 80/124 (64.52%), Query Frame = 0 
Query:   81 EEETGKDRTFLLGYDGGGFEVRDINYRGSILAMPSACFLWKPRNVEEITPESLTALMVVRPPIEILVVGTGEDSVNRPLAPATLAFLAANGVAVEHMDTTSACSTFNILNQEDRRVAAALLAVD 205
            E  T   +  +  YD GGF V ++N RGSI   P    +W+P+ ++EIT ESL    V  PP+EILV+G G+  + + L P    +L  NG+ VE++D+ +AC+TFNILN EDR+VAAA+L VD
Sbjct:   29 EMMTDTQKVAITEYDDGGFVVNEVNLRGSIAVFPEIAMMWRPQTMDEITKESLAVFTVANPPVEILVLGCGK-RIPKLLKPELAEYLKFNGIVVEYVDSFNACATFNILNAEDRKVAAAILPVD 151
[Close]
BLAST of NO09G01850 vs. NCBI_GenBank
Match: CBJ31879.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 115.5 bits (288), Expect = 2.000e-22
Identity = 62/144 (43.06%), Postives = 92/144 (63.89%), Query Frame = 0 
Query:   66 GLADLGKGVDILAPGEEETGKDRTFLLGYDGGGFEVRD-INYRGSILAMPSACFLWKPRNVEEITPESLTALMVVRPPIEILVVGTGEDSVNRPLAPATLAFLAANGVAVEHMDTTSACSTFNILNQEDRRVAAALLAVDTAAE 209
            G   LGKG D++   ++   + +  + GYD  GF++ D ++ RGS++ MP++  LW+P+   +IT ESL  + +V P I++++VG GE    R L P  +  LA+ G+ VE MDT +ACSTFN+LN EDRRVAAALL +    E
Sbjct:   67 GNTALGKGFDLME--DDPDSRKKVVIGGYDPHGFQLGDGVDVRGSMICMPNSFVLWQPKRPSDITVESLRMVELVIPKIDLIIVGVGERMTAR-LDPVLVKHLASKGIRVEQMDTVNACSTFNVLNAEDRRVAAALLQLSPEEE 207
[Close]
BLAST of NO09G01850 vs. NCBI_GenBank
Match: XP_024575838.1 (Uncharacterized conserved nuclear protein [Plasmopara halstedii] >CEG39469.1 Uncharacterized conserved nuclear protein [Plasmopara halstedii])

HSP 1 Score: 115.5 bits (288), Expect = 2.000e-22
Identity = 58/112 (51.79%), Postives = 73/112 (65.18%), Query Frame = 0 
Query:   94 YDGGGFEVRDINYRGSILAMPSACFLWKPRNVEEITPESLTALMVVRPPIEILVVGTGEDSVNRPLAPATLAFLAANGVAVEHMDTTSACSTFNILNQEDRRVAAALLAVDT 206
            YD GGF + DIN RG +        LWKP+ ++EIT E L+  +V  PPIEILV+G GE  V+  L P     L  NG+ VE++DT +AC+TFNILN EDR VAAALL  D+
Sbjct:   52 YDSGGFIINDINMRGGVALFSEIAMLWKPKKIKEITREHLSVFLVFNPPIEILVLGCGE-RVDHGLDPELKEMLKVNGIVVEYLDTVNACATFNILNAEDRPVAAALLPYDS 162
[Close]
BLAST of NO09G01850 vs. NCBI_GenBank
Match: CCI45464.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 113.2 bits (282), Expect = 9.700e-22
Identity = 55/128 (42.97%), Postives = 78/128 (60.94%), Query Frame = 0 
Query:   85 GKDRTFLLGYDGGGFEVRDINYRGSILAMPSACFLWKPRNVEEITPESLTALMVVRPPIEILVVGTGEDSVNRPLAPATLAFLAANGVAVEHMDTTSACSTFNILNQEDRRVAAALLAVDTAAEENEE 213
            G D+  +  YD GGF + +IN RG++   P+   LWKP  + EIT +S+    V  PPIE+L++G GE  +   L P    +L  NG+ VE +D+ +AC+TFNILN EDRR+AAALL  +    +  E
Sbjct:   36 GTDKVSISEYDEGGFVINNINMRGAVAVFPTIAMLWKPNCLREITKQSMQIFTVTEPPIELLLLGCGE-QIQHDLDPTVRDYLKRNGIVVEFLDSANACATFNILNAEDRRIAAALLPCEPLGHKTTE 162
[Close]
BLAST of NO09G01850 vs. NCBI_GenBank
Match: POM70896.1 (Hypothetical protein PHPALM_12608 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 112.1 bits (279), Expect = 2.200e-21
Identity = 63/142 (44.37%), Postives = 77/142 (54.23%), Query Frame = 0 
Query:   85 GKDRTFLLGYDGGGFEVRDINYRGSILAMPSACFLWKPRNVEEITPESLTALMVVRPPI----------------------EILVVGTGEDSVNRPLAPATLAFLAANGVAVEHMDTTSACSTFNILNQEDRRVAAALLAVD 205
            G  +  +  YD GGF + D+N RG ++       LWKPR +EEIT E LT   V  PPI                      EILV+G GE  +N  LAP     L  NG+ VE++DT +AC+TFNILN EDRRVAAALL  D
Sbjct:    4 GTAKVSVTEYDEGGFVINDVNMRGGVVLFSEIAMLWKPRRIEEITREHLTVFTVSNPPIGRFKTLLNGRRRERSKVYTVIAEILVLGCGE-RINHGLAPELKEMLKVNGIVVEYLDTVNACATFNILNAEDRRVAAALLPYD 144
[Close]
BLAST of NO09G01850 vs. NCBI_GenBank
Match: CCA26592.1 (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 108.2 bits (269), Expect = 3.100e-20
Identity = 56/123 (45.53%), Postives = 74/123 (60.16%), Query Frame = 0 
Query:   85 GKDRTFLLGYDGGGFEVRDINYRGSILAMPSACFLWKPRNVEEITPESLTALMVVRPPIEILVVGTGEDSVNRPLAPATLAFLAANGVAVEHMDTTSACSTFNILNQEDRRVAAALLAVDTAA 208
            G D+  +  YD GGF + DIN RG++    +   LWKP    EIT ES+    V  PPIE+L+VG GE  +   L P    +L  +G+ VE +D+ +A +TFNILN EDRRVAAALL  +  A
Sbjct:   36 GSDKVSISEYDEGGFVINDINLRGAVAVFSNIAMLWKPLRFREITKESMQIFTVTEPPIELLLVGCGE-RIQHDLDPDVREYLRMHGIVVECLDSANASATFNILNAEDRRVAAALLPCEPIA 157
The following BLAST results are available for this feature:
BLAST of NO09G01850 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
GAX98771.18.000e-2447.15Hypothetical protein PINS_006615 [Pythium insidios... [more]
ETI39889.11.800e-2347.97hypothetical protein F443_14558 [Phytophthora para... [more]
ETK80025.11.800e-2347.97hypothetical protein L915_14197 [Phytophthora para... [more]
XP_009823601.16.700e-2346.77hypothetical protein H257_01874 [Aphanomyces astac... [more]
XP_008866478.16.700e-2345.97hypothetical protein H310_04085 [Aphanomyces invad... [more]
CBJ31879.12.000e-2243.06conserved unknown protein [Ectocarpus siliculosus][more]
XP_024575838.12.000e-2251.79Uncharacterized conserved nuclear protein [Plasmop... [more]
CCI45464.19.700e-2242.97unnamed protein product [Albugo candida][more]
POM70896.12.200e-2144.37Hypothetical protein PHPALM_12608 [Phytophthora pa... [more]
CCA26592.13.100e-2045.53conserved hypothetical protein [Albugo laibachii N... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL121nonsL121Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL120nonsL120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR128ngnoR128Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010688NSK010688Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G01850.1NO09G01850.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588876gene_4366Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100069g7gene2946Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G01850.1NO09G01850.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G01850 ID=NO09G01850|Name=NO09G01850|organism=Nannochloropsis oceanica|type=gene|length=829bp
TTGCTGGAGAGAAATCCGCATCTCATGCCTCTCCTCAACAGCGCCTTTTT
CTTAACCTGAACATCCCAAAATTGTACACTCGGGCACCAGGACACCCACA
AGCAAATGTTGCCGCGTATCGCAAGACGAATCCGGCCCTTAAAATGCCAT
GTAGTAAACTCCTCGTCTTCGTCCTCGTCTTCGGGTTCGCCGCAGCAACG
GCCAAACGCCTCGGCATCATCAGCGTTCCCCCTCCTGCCATCTTCGACCT
CATTGAAACACCACCAGCACTTCAAACAGTACCGCCAGCAGCAAATACGT
GGTCTGGCAGATTTGGGCAAGGGTGTCGATATCTTGGCGCCGGGGGAAGA
AGAAACGGGGAAGGATCGAACGTTCTTGCTGGGCTACGATGGGGGAGGCT
TCGAGGTGCGGGATATCAATTATCGGGGGTCCATTCTTGCCATGCCCTCG
GCCTGCTTCTTGTGGAAGCCACGCAACGTAGAGGAAATCACACCCGAGTC
ATTGACAGCTTTGATGGTGGTCAGGCCGCCTATTGAGATACTGGTGGTGG
GCACGGGGGAAGACTCCGTGAATCGCCCGTTGGCCCCTGCCACGCTGGCG
TTTCTTGCCGCGAATGGCGTGGCAGTCGAACACATGGACACGACATCCGC
GTGTTCTACATTCAATATTTTGAACCAGGAGGACCGGCGGGTGGCTGCTG
CTTTGCTGGCAGTGGACACAGCGGCGGAAGAGAATGAGGAATAGGCAGGC
AGGTTGTGTATATAGATGAAGATAAAGATGAACATGACAAGGGAGTGATA
GAAGAGCCCTCTAGTATATGACGGGGGGG
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protein sequence of NO09G01850.1

>NO09G01850.1-protein ID=NO09G01850.1-protein|Name=NO09G01850.1|organism=Nannochloropsis oceanica|type=polypeptide|length=213bp
MLPRIARRIRPLKCHVVNSSSSSSSSGSPQQRPNASASSAFPLLPSSTSL
KHHQHFKQYRQQQIRGLADLGKGVDILAPGEEETGKDRTFLLGYDGGGFE
VRDINYRGSILAMPSACFLWKPRNVEEITPESLTALMVVRPPIEILVVGT
GEDSVNRPLAPATLAFLAANGVAVEHMDTTSACSTFNILNQEDRRVAAAL
LAVDTAAEENEE*
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Synonyms
Publications