NO09G01540, NO09G01540 (gene) Nannochloropsis oceanica

Overview
NameNO09G01540
Unique NameNO09G01540
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2900
Alignment locationchr9:486203..489102 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:486203..489102 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO09G01540 vs. NCBI_GenBank
Match: CBN74989.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 127.9 bits (320), Expect = 1.600e-25
Identity = 64/122 (52.46%), Postives = 84/122 (68.85%), Query Frame = 0
Query:  140 NEAAPTATAAPLPPTLPTAVGAAPSTGPRPPLRRGKWTFQEEAYVSRIIHDFNHGLLPLAAGTTLRAYLSDTLNCDPMRITKKFAGAACIGKRVFQPCDSSADTLERRRRAQAELEVLRKEF 262
            N+  P   A  L  +  T +       PR P+R+GKWT +EE Y ++II+DFN GLLPLA GTTLR+YLS+ LNCDPMRITKKFAGA+CIGKRVF P + + + L    R++ ELE + ++F
Sbjct:  222 NKQDPNYLATILTDSAKTVILDISQLDPRAPVRKGKWTPEEEVYTTKIINDFNKGLLPLAPGTTLRSYLSEKLNCDPMRITKKFAGASCIGKRVFMPVERTPENLIETHRSRRELEEMARKF 343          
BLAST of NO09G01540 vs. NCBI_GenBank
Match: GAX14445.1 (hypothetical protein FisN_11Hh096 [Fistulifera solaris])

HSP 1 Score: 117.1 bits (292), Expect = 2.700e-22
Identity = 57/91 (62.64%), Postives = 65/91 (71.43%), Query Frame = 0
Query:  171 LRRGKWTFQEEAYVSRIIHDFNHGLLPLAAGTTLRAYLSDTLNCDPMRITKKFAGAACIGKRVFQPCDSSADTLERRRRAQAELEVLRKEF 262
            LRRGKWT +EEAYV+R+I DFN G L   AGTTLR YLS+ L CDPMRITKKF G ACIGKRVF P   S + +    +AQAEL  L K +
Sbjct:  157 LRRGKWTAEEEAYVARVIQDFNSGFLDAPAGTTLRTYLSEKLQCDPMRITKKFTGDACIGKRVFHPAVRSPNNVSTIDKAQAELLHLEKRW 247          
BLAST of NO09G01540 vs. NCBI_GenBank
Match: EWM26570.1 (hypothetical protein Naga_100421g2 [Nannochloropsis gaditana])

HSP 1 Score: 115.2 bits (287), Expect = 1.000e-21
Identity = 71/170 (41.76%), Postives = 92/170 (54.12%), Query Frame = 0
Query:  101 VRSQPLPPCLTPIQRSTSSGDLNGQRQTG---KAALMSSSLLNEAAPTATAAPLPPTLPTAVGAAPSTG------PRPPLRRGKWTFQEEAYVSRIIHDFNHGLLPLAAGTTLRAYLSDTLNCDPMRITKKFAGAACIGKRVFQPCDSSADTLERRRRAQAELEVLRKEF 262
            V    LP  + PI  S S     GQ        + L ++S      P  T  PL  ++   V  A S        PR PLR+GKWT +EE Y   II +FN GL+ L  GTTLR+YLS+ LNCDPMR+TKKF+G +CIGK +F PC+++ D LE  +R  + L  L   F
Sbjct:   11 VEESVLPKMIKPIDASDS-----GQPSLSPPHHSPLSAASPTRFPLPPLTLKPLARSVSNPVITASSNAHRMSLVPRVPLRKGKWTPEEEMYAHYIIDNFNKGLISLTRGTTLRSYLSERLNCDPMRVTKKFSGTSCIGKSIFCPCEATPDNLEASKRVSSRLAELEAAF 175          
BLAST of NO09G01540 vs. NCBI_GenBank
Match: XP_009034023.1 (hypothetical protein AURANDRAFT_70829 [Aureococcus anophagefferens] >EGB11680.1 hypothetical protein AURANDRAFT_70829 [Aureococcus anophagefferens])

HSP 1 Score: 114.8 bits (286), Expect = 1.400e-21
Identity = 56/86 (65.12%), Postives = 66/86 (76.74%), Query Frame = 0
Query:  171 LRRGKWTFQEEAYVSRIIHDFNHGLLPLAAGTTLRAYLSDTLNCDPMRITKKFAGAACIGKRVFQPCDSSAD-TLERRRRAQAELE 256
            LRRGKWT +EE YV R+I DFN+GLL  A GTTLR YLS+ LNCDPMRITKKF G A IGKRV+ P +++ +  +ER RR  AELE
Sbjct:    7 LRRGKWTVEEERYVERVIRDFNNGLLHAAPGTTLRNYLSEKLNCDPMRITKKFTGDASIGKRVYHPRENAPEPAVERARREVAELE 92          
BLAST of NO09G01540 vs. NCBI_GenBank
Match: XP_002177495.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC51958.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 113.2 bits (282), Expect = 4.000e-21
Identity = 74/160 (46.25%), Postives = 88/160 (55.00%), Query Frame = 0
Query:  115 RSTS-SGDLNGQRQTGKAALMSSS------------LLNEAAPTATAAPLPPTLPTAVGAAPSTGPRPPLRRGKWTFQEEAYVSRIIHDFNHGLLPLAAGTTLRAYLSDTLNCDPMRITKKFAGAACIGKRVFQPCDSSADTLERRRRAQAELEVLRKEF 262
            R TS  G L G  Q   A+   SS            ++  +AP   A PL  T PT+  +  S      LRRGKWT +EEAYV+R+I DFN G L   AGTTLR +LS+ L CDPMRITKKF G ACIGKRVF P   S        +AQAEL  L + +
Sbjct:  159 RPTSVQGSLPGSSQAYSASSNGSSSDHTEEPSSLPNIITTSAPGTGAQPLTSTSPTS--SNTSVRKTSGLRRGKWTVEEEAYVARVIQDFNSGFLDAPAGTTLRTFLSEKLQCDPMRITKKFTGDACIGKRVFHPAVRSPSNGTAIDKAQAELHGLERRW 316          
BLAST of NO09G01540 vs. NCBI_GenBank
Match: GAX97583.1 (Hypothetical protein PINS_005457 [Pythium insidiosum])

HSP 1 Score: 112.8 bits (281), Expect = 5.200e-21
Identity = 52/95 (54.74%), Postives = 65/95 (68.42%), Query Frame = 0
Query:  168 RPPLRRGKWTFQEEAYVSRIIHDFNHGLLPLAAGTTLRAYLSDTLNCDPMRITKKFAGAACIGKRVFQPCDSSADTLERRRRAQAELEVLRKEFL 263
            RP LR+GKWT +EE Y +++   F  GLLP+A GT LR YLS  LNC+PMRITKKF G  CIGK+VF+PC  + +   RR +AQ EL  L   F+
Sbjct: 1272 RPGLRKGKWTEEEERYAAQLTMYFKEGLLPIARGTMLRLYLSQKLNCEPMRITKKFTGGECIGKQVFRPCSPTPEAKVRRMQAQLELVALEAAFI 1366          
BLAST of NO09G01540 vs. NCBI_GenBank
Match: XP_009035229.1 (hypothetical protein AURANDRAFT_62630 [Aureococcus anophagefferens] >EGB10431.1 hypothetical protein AURANDRAFT_62630 [Aureococcus anophagefferens])

HSP 1 Score: 108.6 bits (270), Expect = 9.800e-20
Identity = 66/138 (47.83%), Postives = 87/138 (63.04%), Query Frame = 0
Query:  132 ALMSSSLLNEAAPTATAAPLPPTLP---TAVGAAPSTGPRPP--LRRGKWTFQEEAYVSRIIHDFNHGLLPLAAGTTLRAYLSDTLNCDPMRITKKFAGAACIGKRVFQPCDSSADTL--ERRRRAQAELEVLRKEFL 263
            A  ++ L +E+   A+A   PP  P    A G  P+  PR    LRRGKWT +EEAY +R+IH+F  GLLPL  GTTLR +LS  LNCDPMRI+KKF G+ CIGK+VF+   +  D L  +  +R++ EL  L + FL
Sbjct:  547 AAAAAPLPDESQIEASAEKSPPRSPRSRKADGDKPAPKPRRENGLRRGKWTVEEEAYANRLIHEFKLGLLPLTDGTTLRTFLSKLLNCDPMRISKKFVGSNCIGKQVFRRRQADMDRLTPDDIKRSRYELAELERRFL 684          
BLAST of NO09G01540 vs. NCBI_GenBank
Match: OEU18271.1 (hypothetical protein FRACYDRAFT_260330 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 107.8 bits (268), Expect = 1.700e-19
Identity = 54/97 (55.67%), Postives = 70/97 (72.16%), Query Frame = 0
Query:  168 RPPLRRGKWTFQEEAYVSRIIHDFNHGLLPLAAGTTLRAYLSDTLNCDPMRITKKFAGAACIGKRVF--QPCDSSADTLERRRRAQAELEVLRKEFL 263
            R  LRRGKWT +EEAY +R+I +F  GLLPL  GTTLR +LS  LNCDPMRI+KKF G+ CIGK+VF  +  D +  T E+ ++++AEL  L + FL
Sbjct:   44 RQQLRRGKWTPEEEAYANRLIQEFKAGLLPLTDGTTLRTFLSKLLNCDPMRISKKFVGSNCIGKQVFRRRTADLNRLTPEQIQKSRAELSDLERRFL 140          
BLAST of NO09G01540 vs. NCBI_GenBank
Match: XP_002176339.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC42575.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 107.5 bits (267), Expect = 2.200e-19
Identity = 63/125 (50.40%), Postives = 83/125 (66.40%), Query Frame = 0
Query:  141 EAAPTATAAPLPPTLPTAVGAAPSTGPR-PPLRRGKWTFQEEAYVSRIIHDFNHGLLPLAAGTTLRAYLSDTLNCDPMRITKKFAGAACIGKRVF--QPCDSSADTLERRRRAQAELEVLRKEFL 263
            EAA +  A P  P    A+   P+   + PPLRRGKWT +EEAY +R+I +F  GLLPL  GTTLR +LS  LNCDPMRI+KKF G+ CIGK+VF  +  D +  T E+ ++++AEL  L + FL
Sbjct:   26 EAAHSMAAPPQQP--HPALDVIPNNKKKGPPLRRGKWTPEEEAYANRLILEFKSGLLPLTDGTTLRTFLSKLLNCDPMRISKKFVGSNCIGKQVFRRRTADLNRLTPEQIQQSRAELSELERRFL 148          
BLAST of NO09G01540 vs. NCBI_GenBank
Match: POM60778.1 (hypothetical protein PHPALM_30338 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 107.1 bits (266), Expect = 2.800e-19
Identity = 57/128 (44.53%), Postives = 74/128 (57.81%), Query Frame = 0
Query:  135 SSSLLNEAAPTATAAPLPPTLPTAVGAAPSTGPRPPLRRGKWTFQEEAYVSRIIHDFNHGLLPLAAGTTLRAYLSDTLNCDPMRITKKFAGAACIGKRVFQPCDSSADTLERRRRAQAELEVLRKEFL 263
            S SLL++        P     P     +  +  RP LR+GKWT +E  Y +++ + F  GLLPL  GT LR YLS  LNC+PMRITKKF G  CIGK+VF+PC  + D+  R  +AQ EL  L   F+
Sbjct:  131 SDSLLDDPKQRKKITPKRARTPKLSSRSTKSKARPGLRKGKWTEEESRYAAQLTNYFKEGLLPLERGTMLRLYLSQKLNCEPMRITKKFTGGECIGKQVFRPCSPTPDSRVRIMQAQLELVTLEAAFI 258          
The following BLAST results are available for this feature:
BLAST of NO09G01540 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
CBN74989.11.600e-2552.46conserved unknown protein [Ectocarpus siliculosus][more]
GAX14445.12.700e-2262.64hypothetical protein FisN_11Hh096 [Fistulifera sol... [more]
EWM26570.11.000e-2141.76hypothetical protein Naga_100421g2 [Nannochloropsi... [more]
XP_009034023.11.400e-2165.12hypothetical protein AURANDRAFT_70829 [Aureococcus... [more]
XP_002177495.14.000e-2146.25predicted protein [Phaeodactylum tricornutum CCAP ... [more]
GAX97583.15.200e-2154.74Hypothetical protein PINS_005457 [Pythium insidios... [more]
XP_009035229.19.800e-2047.83hypothetical protein AURANDRAFT_62630 [Aureococcus... [more]
OEU18271.11.700e-1955.67hypothetical protein FRACYDRAFT_260330 [Fragilario... [more]
XP_002176339.12.200e-1950.40predicted protein [Phaeodactylum tricornutum CCAP ... [more]
POM60778.12.800e-1944.53hypothetical protein PHPALM_30338 [Phytophthora pa... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL119nonsL119Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010648NSK010648Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G01540.1NO09G01540.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|23029gene_4398Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100059g28gene2927Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G01540.1NO09G01540.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G01540 ID=NO09G01540|Name=NO09G01540|organism=Nannochloropsis oceanica|type=gene|length=2900bp
ATGGTGGCCACGAGCACGGGACGACGGGCCAGCAGTCGAGCGCGGGTGGA
GGAGGACAAGACCTTCTACAGCAACTCCAACCAACCGGAGGCGGATGAGG
AGGAGGACCTTAGCATGGACGAGGACGAAGATGAGAAGCAGGCATACCAG
CAACGACAGCATCAACCTCGTTCAAGGCATCTTCACAAATCCTTCACTAC
CAACGCCATGACCCgtaagtactttgaacgattcgaaaaggaggcaaggg
aagaagggtctcattcgccccttatagagcaagctccctccctcatgttc
cactctgttttataaacaagtataaatatgcccgcccctctccactcata
aaccacagGCACCGAAGCCCGTACTAATAAGGACGAAGACGAAAGCAGCG
ATAGCTCAGACAACTCGTCGGACGATGATAGCAACATGGTGGTCGTCCGC
TCCCAACCCCTGCCCCCATGTCTGACTCCTATCCAGCGCTCCACTAGCAG
CGGTGACCTCAATGGCCAGCGACAAACAGGCAAAGCCGCCCTCATGTCCT
CTTCTTTGCTCAATGAGGCAGCGCCCACGGCCACCGCAGCCCCCCTTCCT
CCCACTCTCCCGACAGCAGTAGGAGCAGCGCCGAGCACTGGCCCTCGTCC
CCCGCTCCGTCGTGGGAAGTGGACCTTCCAAGAAGAGGCCTATGTTTCCC
GAATCATTCATGATTTCAACCATGGACTGCTACCACTAGCAGCAGGGACC
ACGTTGCGTGCTTATTTGAGTGATACATTGAACTGTGACCCGATGCGCAT
CACCAAGAAATTTGCAGGAGCGGCGTGCATTGGGAAGAGGGTCTTCCAAC
CTTGTGATTCCTCTGCAGATACCCTAGAGAGACGAAGGCGGGCACAGGCG
GAATTGGAGGTATTAAGAAAGGAGTTTTTGAGAACGACGACGTCGTCGAT
GCTGTCTTCCTCGTACCACGGAGgtaccagtttgatcatgccactgaccg
gcgggcgtgcaggcgggggggggggagcagcaaccaccacccacatccgc
agcagcatacgcacgtgcaacactggggcgtccaccatccgcatcctcac
caccggacctcccctggtcctactccagGCTACGGGCCATTCGGTGGCTC
TGCTCCTCTTCCCCCTCCTCCTGGCCCTGGCTATACCTCAGGCTACGCCC
CTCCTGGCGGCTATCTCTACCCTCCCCCCCCTCCTCCTCCCAGTGGCTTA
TCTCCTCCCTCCTCATCGTCCTCTTCCTATAGTGACTCGTCAAAAAGCTC
TGTTTCAACCCACGCTGGCTGGCGCCCATCCCACCAACCGCAGCAGCAGC
AACCCCAGCACCACCAGCCGTGGGGGGTCCCTCCGCCCCCTCCTCCTTCC
CTTCCTCATTCGCATTCTCACGGACCCCATGATATTATCGGCGGGCCTCC
TCTTGGTCCATCCGTCACCGCGTTTGGGATTGTCCCTCCCCCCCCTCCTC
CCCTCTCTTCCTCTTCGTCTTCTTCCACCATCCCTTCTCCTCCTCTTCCT
CCCCACGGCGTTGGACCGTCAGTCAGCAACAACAACGTTCTTCCCCCTCC
CCCTCCTTCTCTTGGGGGGCTGCGGATCGGGAGCAGCAGCTGTAGCAGGA
GCAGCAGCATGTGCAGCAAGAGCGGCAGTCACGGAGGCAGCACGGGCAGC
GAGGGTAGTGGGAGCGGAAGCGATGATGGCGGGGAGGTCGTTGACCACCA
CCAGTCGCACAGCAGAAAAGGTAACGGCCGCACCAGCAGCAGCAGCAGCA
GCAAAACGAATAGGAACGTTGGTCTCTCGGGCCTTCCTCCTTACGCTGTA
GAAAAGTGCCCCACTCCCACCGAGGAAACCAACGGCAAAAGCAGCAGCAG
CAACAACAACAGCCCTCGGAGCAGCAGCAGCAAGCGAGCCGCCGCAGGGG
ACGATCACACGGAGTCAGACGAACACCAAAACCTTTCGTTTGCTTTTCCT
CCCTCCTCCCTCCCTCACCACCACCAGCTCCAAGAGCACCAGCAGCATCA
CAAGCATCATCATTCCTCCTACATCCACGGCCGCGTGCCCGTCCCTCCCC
GCCGCTCTCTCAGTAGCAACAACGTCGCACTCATGCACCAAGAAGCCATC
GCAGCGGCAGCATCTACAACAGCAGCATCAGCAGCAGCCGCAGCAGCAGA
AGAAGCAGGAGAGGACGCGGACGCGCGGTTGTTGAGCCGTTACCGGCATG
CTCGGTCTTCCTCCGAACCCCGGGATTGGTCGCATGGCGCGAAGATTGTT
CAAGAACACAAATACCAACACGATGCCCACCAGTCTGTGGAGAGACGAGT
GCATTCCCCCCCTCCTGCGAATCACAACGAGGGGGAGCTGTTGCTTGATT
TTCTCATAACTGTTCGGCGACAGCACGAGGAAAAGGCTCACGGCGGCAGT
GGCGCCTCCTCTTCGTCGTCGAAGAGCGGAAGTGGGGATGAGGACTCGCC
CCGGACGAGCCGCGATGGGAACAGCCCCATGGCGAGCGCAAACTCTTCCG
ATGGAAACGATGACAGCAGTGCGAGTCGGGAGGAAGAGGGAGGGAGGGGA
AGCAGGGACGAAGAGGAGGAGGGAGAAGAGGAGGAAGAGGAGGGAGAGAA
CGAGCGAGAGCCCCAACTACAGCAGCAGCGTCGTCGTGGGCACCACGGTG
GCATCCCTCGGGATGGCTTGGCGCCAAAGCAGGGAGAGGGGGAGGGCGTG
ACTGCTGGTGGGTATAGCTTGAAAAGTATTGGTGAAATCAAGAACACCTG
CACCAGCAGCAACAACAGCGACAGCAGCAACAGCAACGGGGGTGCTCTTG
GCTTGCCGCCCATGAAAAAGGCACGGAGCTATGAGTCATTTCGGATTTGA
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protein sequence of NO09G01540.1

>NO09G01540.1-protein ID=NO09G01540.1-protein|Name=NO09G01540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=867bp
MVATSTGRRASSRARVEEDKTFYSNSNQPEADEEEDLSMDEDEDEKQAYQ
QRQHQPRSRHLHKSFTTNAMTRTEARTNKDEDESSDSSDNSSDDDSNMVV
VRSQPLPPCLTPIQRSTSSGDLNGQRQTGKAALMSSSLLNEAAPTATAAP
LPPTLPTAVGAAPSTGPRPPLRRGKWTFQEEAYVSRIIHDFNHGLLPLAA
GTTLRAYLSDTLNCDPMRITKKFAGAACIGKRVFQPCDSSADTLERRRRA
QAELEVLRKEFLRTTTSSMLSSSYHGGYGPFGGSAPLPPPPGPGYTSGYA
PPGGYLYPPPPPPPSGLSPPSSSSSSYSDSSKSSVSTHAGWRPSHQPQQQ
QPQHHQPWGVPPPPPPSLPHSHSHGPHDIIGGPPLGPSVTAFGIVPPPPP
PLSSSSSSSTIPSPPLPPHGVGPSVSNNNVLPPPPPSLGGLRIGSSSCSR
SSSMCSKSGSHGGSTGSEGSGSGSDDGGEVVDHHQSHSRKGNGRTSSSSS
SKTNRNVGLSGLPPYAVEKCPTPTEETNGKSSSSNNNSPRSSSSKRAAAG
DDHTESDEHQNLSFAFPPSSLPHHHQLQEHQQHHKHHHSSYIHGRVPVPP
RRSLSSNNVALMHQEAIAAAASTTAASAAAAAAEEAGEDADARLLSRYRH
ARSSSEPRDWSHGAKIVQEHKYQHDAHQSVERRVHSPPPANHNEGELLLD
FLITVRRQHEEKAHGGSGASSSSSKSGSGDEDSPRTSRDGNSPMASANSS
DGNDDSSASREEEGGRGSRDEEEEGEEEEEEGENEREPQLQQQRRRGHHG
GIPRDGLAPKQGEGEGVTAGGYSLKSIGEIKNTCTSSNNSDSSNSNGGAL
GLPPMKKARSYESFRI*
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Synonyms
Publications