NO09G01470, NO09G01470 (gene) Nannochloropsis oceanica

Overview
NameNO09G01470
Unique NameNO09G01470
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length819
Alignment locationchr9:470977..471795 +

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Properties
Property NameValue
DescriptionMediator of rna polymerase ii transcription subunit 31
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:470977..471795 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016592mediator complex
GO:0005654nucleoplasm
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO:0009058biosynthetic process
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR008831Mediator_Med31
Vocabulary: Molecular Function
TermDefinition
GO:0140110transcription regulator activity
Homology
BLAST of NO09G01470 vs. NCBI_GenBank
Match: XP_005856247.1 (mediator of rna polymerase ii transcription subunit 31, partial [Nannochloropsis gaditana CCMP526] >EKU20114.1 mediator of rna polymerase ii transcription subunit 31, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 204.5 bits (519), Expect = 2.900e-49
Identity = 97/143 (67.83%), Postives = 114/143 (79.72%), Query Frame = 0
Query:   22 HHNALPDDETRFIIELEFVQCLANADYLHWLALNKYLDDPAFVVFLRYLNYWRRPEYARFLVYPQTLAVLELLGRAEVRKEIGRVQYKDFLQDQQLLQWRFYLNNRRRLADAGSPAGTEGERRALRALSKAGGTWSSALNEPP 165
            H   LPDDETRF +ELEFVQCLANADYLHWLALN+YL+DPAF+ FLRYL+YWR+P+YARFLVYPQ LA+LELLGRAEVR+E+GR QYK+FL++QQLL WRFY NNR+R      P        A +   KAGGTW++ LNE P
Sbjct:   78 HRYELPDDETRFTLELEFVQCLANADYLHWLALNRYLEDPAFLAFLRYLHYWRQPKYARFLVYPQALAMLELLGRAEVRRELGRGQYKEFLREQQLLHWRFYFNNRQRRLVVNPP-------NASKETLKAGGTWTTVLNERP 213          
BLAST of NO09G01470 vs. NCBI_GenBank
Match: EWM27644.1 (mediator of rna polymerase ii transcription subunit 31 [Nannochloropsis gaditana])

HSP 1 Score: 204.5 bits (519), Expect = 2.900e-49
Identity = 97/143 (67.83%), Postives = 114/143 (79.72%), Query Frame = 0
Query:   22 HHNALPDDETRFIIELEFVQCLANADYLHWLALNKYLDDPAFVVFLRYLNYWRRPEYARFLVYPQTLAVLELLGRAEVRKEIGRVQYKDFLQDQQLLQWRFYLNNRRRLADAGSPAGTEGERRALRALSKAGGTWSSALNEPP 165
            H   LPDDETRF +ELEFVQCLANADYLHWLALN+YL+DPAF+ FLRYL+YWR+P+YARFLVYPQ LA+LELLGRAEVR+E+GR QYK+FL++QQLL WRFY NNR+R      P        A +   KAGGTW++ LNE P
Sbjct:   14 HRYELPDDETRFTLELEFVQCLANADYLHWLALNRYLEDPAFLAFLRYLHYWRQPKYARFLVYPQALAMLELLGRAEVRRELGRGQYKEFLREQQLLHWRFYFNNRQRRLVVNPP-------NASKETLKAGGTWTTVLNERP 149          
BLAST of NO09G01470 vs. NCBI_GenBank
Match: ABK24720.1 (unknown [Picea sitchensis])

HSP 1 Score: 114.4 bits (285), Expect = 4.000e-22
Identity = 53/123 (43.09%), Postives = 76/123 (61.79%), Query Frame = 0
Query:    5 PPQLSKPSAAKAALPQQHHNALPDDETRFIIELEFVQCLANADYLHWLALNKYLDDPAFVVFLRYLNYWRRPEYARFLVYPQTLAVLELLGRAEVRKEIGRVQYKDFLQDQQLLQWRFYLNNR 128
            P + S  S+   ++P++ +    D   RF++ELEF+QCLAN  Y+H+LA N+Y DD AF+ +L+YL YW+RPEY +F++YP  L  LELL  A  R  +     K+    QQ   W+ Y NNR
Sbjct:    3 PGKGSSDSSPLPSIPKEPYKDPDDGRQRFLLELEFIQCLANPTYIHYLAQNRYFDDEAFIGYLKYLQYWQRPEYIKFIMYPHCLFFLELLQNANFRSAMAHPTNKELAHRQQFFFWKNYRNNR 125          
BLAST of NO09G01470 vs. NCBI_GenBank
Match: OMO94785.1 (Mediator complex, subunit Med31 [Corchorus capsularis])

HSP 1 Score: 112.1 bits (279), Expect = 2.000e-21
Identity = 56/122 (45.90%), Postives = 75/122 (61.48%), Query Frame = 0
Query:    9 SKPSAAKAALPQQHHNAL--PDD-ETRFIIELEFVQCLANADYLHWLALNKYLDDPAFVVFLRYLNYWRRPEYARFLVYPQTLAVLELLGRAEVRKEIGRVQYKDFLQDQQLLQWRFYLNNR 128
            +K S + +  P    N    PDD   RF++ELEFVQCLAN  Y+H+LA N+Y +D AF+ +L+YL YW+RPEY +F++YP  L  LELL  A  R  +     K+ L  QQ   W+ Y NNR
Sbjct:    4 NKESDSASDTPSSPKNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPGNKELLHRQQFFFWKNYRNNR 125          
BLAST of NO09G01470 vs. NCBI_GenBank
Match: XP_010062768.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 31 [Eucalyptus grandis] >XP_010062777.1 PREDICTED: mediator of RNA polymerase II transcription subunit 31 [Eucalyptus grandis] >XP_010062786.1 PREDICTED: mediator of RNA polymerase II transcription subunit 31 [Eucalyptus grandis] >XP_010062794.1 PREDICTED: mediator of RNA polymerase II transcription subunit 31 [Eucalyptus grandis] >KCW90901.1 hypothetical protein EUGRSUZ_A02936 [Eucalyptus grandis])

HSP 1 Score: 111.7 bits (278), Expect = 2.600e-21
Identity = 54/121 (44.63%), Postives = 73/121 (60.33%), Query Frame = 0
Query:   10 KPSAAKAALPQQHHNALPDDE---TRFIIELEFVQCLANADYLHWLALNKYLDDPAFVVFLRYLNYWRRPEYARFLVYPQTLAVLELLGRAEVRKEIGRVQYKDFLQDQQLLQWRFYLNNR 128
            K S   +  P    N L +D+    RF++ELEFVQCLAN  Y+H+LA N+Y +D AF+ +L+YL YW+RPEY +F++YP  L  LELL  A  R  +     K+    QQ   W+ Y NNR
Sbjct:    6 KNSDDPSTSPSSPKNVLKEDDGGRRRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYLKFIMYPHCLFFLELLQNANFRNAMAHPSNKELAHRQQFFFWKNYRNNR 126          
BLAST of NO09G01470 vs. NCBI_GenBank
Match: OAE23599.1 (hypothetical protein AXG93_4316s1310 [Marchantia polymorpha subsp. ruderalis] >PTQ32482.1 hypothetical protein MARPO_0098s0031 [Marchantia polymorpha])

HSP 1 Score: 111.7 bits (278), Expect = 2.600e-21
Identity = 52/96 (54.17%), Postives = 66/96 (68.75%), Query Frame = 0
Query:   32 RFIIELEFVQCLANADYLHWLALNKYLDDPAFVVFLRYLNYWRRPEYARFLVYPQTLAVLELLGRAEVRKEIGRVQYKDFLQDQQLLQWRFYLNNR 128
            RF +ELEFVQCLAN  Y+H+LA N+Y DD AFV +L+YL YW+RPEYA+F+VYP TL  LELL  A+ R  +     K+    QQ   W+ + NNR
Sbjct:   22 RFELELEFVQCLANPTYIHYLAQNRYFDDEAFVGYLKYLQYWQRPEYAKFIVYPHTLFFLELLQSAQFRTAMAHPVNKEVAHRQQFYFWKHHRNNR 117          
BLAST of NO09G01470 vs. NCBI_GenBank
Match: XP_019705253.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 31 [Elaeis guineensis] >XP_019705254.1 PREDICTED: mediator of RNA polymerase II transcription subunit 31 [Elaeis guineensis] >XP_019705255.1 PREDICTED: mediator of RNA polymerase II transcription subunit 31 [Elaeis guineensis] >XP_019705256.1 PREDICTED: mediator of RNA polymerase II transcription subunit 31 [Elaeis guineensis])

HSP 1 Score: 111.7 bits (278), Expect = 2.600e-21
Identity = 54/112 (48.21%), Postives = 70/112 (62.50%), Query Frame = 0
Query:   19 PQQHHNAL--PDD-ETRFIIELEFVQCLANADYLHWLALNKYLDDPAFVVFLRYLNYWRRPEYARFLVYPQTLAVLELLGRAEVRKEIGRVQYKDFLQDQQLLQWRFYLNNR 128
            P  H N    PDD   RF++ELEFVQCLAN  Y+H+LA N+Y +D AF+ +L+YL YW+RPEY +F++YP  L  LELL  A  R  +     K+    QQ   W+ Y NNR
Sbjct:   15 PSAHKNPYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLFFLELLQNANFRNAMAHPGSKELAHRQQYFFWKNYRNNR 126          
BLAST of NO09G01470 vs. NCBI_GenBank
Match: XP_006606081.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 31-like [Glycine max] >KHN15714.1 Mediator of RNA polymerase II transcription subunit 31 [Glycine soja] >KRG91386.1 hypothetical protein GLYMA_20G151600 [Glycine max] >KRG91388.1 hypothetical protein GLYMA_20G151600 [Glycine max])

HSP 1 Score: 111.3 bits (277), Expect = 3.400e-21
Identity = 51/102 (50.00%), Postives = 68/102 (66.67%), Query Frame = 0
Query:   27 PDD-ETRFIIELEFVQCLANADYLHWLALNKYLDDPAFVVFLRYLNYWRRPEYARFLVYPQTLAVLELLGRAEVRKEIGRVQYKDFLQDQQLLQWRFYLNNR 128
            PDD + RF++ELEFVQCLAN  Y+H+LA N+Y +D AF+ +L+YL YW+RPEY +F++YP  L  LELL  A  R  +     K+    QQ   W+ Y NNR
Sbjct:   25 PDDGQQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPTNKELAHRQQFYFWKNYRNNR 126          
BLAST of NO09G01470 vs. NCBI_GenBank
Match: KHN02763.1 (Mediator of RNA polymerase II transcription subunit 31 [Glycine soja])

HSP 1 Score: 111.3 bits (277), Expect = 3.400e-21
Identity = 51/102 (50.00%), Postives = 68/102 (66.67%), Query Frame = 0
Query:   27 PDD-ETRFIIELEFVQCLANADYLHWLALNKYLDDPAFVVFLRYLNYWRRPEYARFLVYPQTLAVLELLGRAEVRKEIGRVQYKDFLQDQQLLQWRFYLNNR 128
            PDD + RF++ELEFVQCLAN  Y+H+LA N+Y +D AF+ +L+YL YW+RPEY +F++YP  L  LELL  A  R  +     K+    QQ   W+ Y NNR
Sbjct:   25 PDDGQQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPTNKELAHRQQFYFWKNYRNNR 126          
BLAST of NO09G01470 vs. NCBI_GenBank
Match: KRG91387.1 (hypothetical protein GLYMA_20G151600 [Glycine max])

HSP 1 Score: 111.3 bits (277), Expect = 3.400e-21
Identity = 51/102 (50.00%), Postives = 68/102 (66.67%), Query Frame = 0
Query:   27 PDD-ETRFIIELEFVQCLANADYLHWLALNKYLDDPAFVVFLRYLNYWRRPEYARFLVYPQTLAVLELLGRAEVRKEIGRVQYKDFLQDQQLLQWRFYLNNR 128
            PDD + RF++ELEFVQCLAN  Y+H+LA N+Y +D AF+ +L+YL YW+RPEY +F++YP  L  LELL  A  R  +     K+    QQ   W+ Y NNR
Sbjct:   11 PDDGQQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPTNKELAHRQQFYFWKNYRNNR 112          
The following BLAST results are available for this feature:
BLAST of NO09G01470 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005856247.12.900e-4967.83mediator of rna polymerase ii transcription subuni... [more]
EWM27644.12.900e-4967.83mediator of rna polymerase ii transcription subuni... [more]
ABK24720.14.000e-2243.09unknown [Picea sitchensis][more]
OMO94785.12.000e-2145.90Mediator complex, subunit Med31 [Corchorus capsula... [more]
XP_010062768.12.600e-2144.63PREDICTED: mediator of RNA polymerase II transcrip... [more]
OAE23599.12.600e-2154.17hypothetical protein AXG93_4316s1310 [Marchantia p... [more]
XP_019705253.12.600e-2148.21PREDICTED: mediator of RNA polymerase II transcrip... [more]
XP_006606081.13.400e-2150.00PREDICTED: mediator of RNA polymerase II transcrip... [more]
KHN02763.13.400e-2150.00Mediator of RNA polymerase II transcription subuni... [more]
KRG91387.13.400e-2150.00hypothetical protein GLYMA_20G151600 [Glycine max][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL119nonsL119Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010640NSK010640Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G01470.1NO09G01470.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589005gene_4405Nannochloropsis oceanica (N. oceanica CCMP1779)gene
med31gene2919Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G01470.1NO09G01470.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G01470 ID=NO09G01470|Name=NO09G01470|organism=Nannochloropsis oceanica|type=gene|length=819bp
CCGAGGACCGAGGAGTGAGGCATCATGAAATATCGTCAAGCGACAACCAT
TACTTTTTCACACTCCTTGCCCCTTCGCCGTGGTTGCCCTCGTTTGCACG
GTTGTCGAATGCCTGTCGTTAACACCTGTACTTATTTGTTCATCTTTCTA
TTCTCTGGACAACACGCTAGTACACAGAGACACAATCATGATGCAGCCAC
CGCCTCAGCTTTCCAAACCCAGTGCTGCCAAAGCTGCACTACCCCAACAA
CATCACAATGCCTTGCCCGACGACGAAACCCGCTTCATCATTGAGCTGGA
GTTCGTGCAGTGCCTGGCCAATGCCGACTACTTGCATTGGCTCGCCCTCA
ACAAATACCTGGACGACCCGGCCTTCGTCGTCTTCCTACGCTATCTCAAT
TACTGGCGCCGACCGGAGTACGCACGATTTCTGGTTTATCCCCAGACCTT
GGCCGTGCTTGAGCTGTTGGGACGAGCAGAAGTTCGAAAAGAGATAGGAA
GGGTTCAGTATAAGGATTTTCTGCAGGACCAGCAATTGCTGCAGTGGCGG
TTCTACCTCAACAACCGGCGACGACTCGCGGATGCGGGTTCACCAGCGGG
TACGGAAGGTGAGCGACGTGCACTGAGAGCACTGAGTAAGGCTGGTGGGA
CATGGTCAAGTGCGTTGAATGAGCCACCGGGACCGCCCTTGTCAGTGGTA
GATTCTGGAGGAGGAAGAGCAGGAGTGGCCGCCAGTAACGCCAAGCGAGC
AGAACACCAGGCAAGAATATGAAATGGAAAAAATAATATGAATATAATGC
GATACCGTTGCATTGGTAC
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protein sequence of NO09G01470.1

>NO09G01470.1-protein ID=NO09G01470.1-protein|Name=NO09G01470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=195bp
MMQPPPQLSKPSAAKAALPQQHHNALPDDETRFIIELEFVQCLANADYLH
WLALNKYLDDPAFVVFLRYLNYWRRPEYARFLVYPQTLAVLELLGRAEVR
KEIGRVQYKDFLQDQQLLQWRFYLNNRRRLADAGSPAGTEGERRALRALS
KAGGTWSSALNEPPGPPLSVVDSGGGRAGVAASNAKRAEHQARI*
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Synonyms
Publications