NO09G01470.1, NO09G01470.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G01470.1
Unique NameNO09G01470.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length819
Alignment locationchr9:470977..471795 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:470977..471795 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G01470.1 vs.
Match: XP_005856247.1 (mediator of rna polymerase ii transcription subunit 31, partial [Nannochloropsis gaditana CCMP526]; EKU20114.1 mediator of rna polymerase ii transcription subunit 31, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 204.5 bits (519), Expect = 2.900e-49
Identity = 97/143 (67.83%), Postives = 114/143 (79.72%), Query Frame = 0 
Query:   22 HHNALPDDETRFIIELEFVQCLANADYLHWLALNKYLDDPAFVVFLRYLNYWRRPEYARFLVYPQTLAVLELLGRAEVRKEIGRVQYKDFLQDQQLLQWRFYLNNRRRLADAGSPAGTEGERRALRALSKAGGTWSSALNEPP 165
            H   LPDDETRF +ELEFVQCLANADYLHWLALN+YL+DPAF+ FLRYL+YWR+P+YARFLVYPQ LA+LELLGRAEVR+E+GR QYK+FL++QQLL WRFY NNR+R      P        A +   KAGGTW++ LNE P
Sbjct:   78 HRYELPDDETRFTLELEFVQCLANADYLHWLALNRYLEDPAFLAFLRYLHYWRQPKYARFLVYPQALAMLELLGRAEVRRELGRGQYKEFLREQQLLHWRFYFNNRQRRLVVNPP-------NASKETLKAGGTWTTVLNERP 213
The following BLAST results are available for this feature:
BLAST of NO09G01470.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005856247.12.900e-4967.83mediator of rna polymerase ii transcription subuni... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G01470NO09G01470Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G01470.1NO09G01470.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G01470.1.cds1NO09G01470.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G01470.1 ID=NO09G01470.1|Name=NO09G01470.1|organism=Nannochloropsis oceanica|type=mRNA|length=819bp
CCGAGGACCGAGGAGTGAGGCATCATGAAATATCGTCAAGCGACAACCAT
TACTTTTTCACACTCCTTGCCCCTTCGCCGTGGTTGCCCTCGTTTGCACG
GTTGTCGAATGCCTGTCGTTAACACCTGTACTTATTTGTTCATCTTTCTA
TTCTCTGGACAACACGCTAGTACACAGAGACACAATCATGATGCAGCCAC
CGCCTCAGCTTTCCAAACCCAGTGCTGCCAAAGCTGCACTACCCCAACAA
CATCACAATGCCTTGCCCGACGACGAAACCCGCTTCATCATTGAGCTGGA
GTTCGTGCAGTGCCTGGCCAATGCCGACTACTTGCATTGGCTCGCCCTCA
ACAAATACCTGGACGACCCGGCCTTCGTCGTCTTCCTACGCTATCTCAAT
TACTGGCGCCGACCGGAGTACGCACGATTTCTGGTTTATCCCCAGACCTT
GGCCGTGCTTGAGCTGTTGGGACGAGCAGAAGTTCGAAAAGAGATAGGAA
GGGTTCAGTATAAGGATTTTCTGCAGGACCAGCAATTGCTGCAGTGGCGG
TTCTACCTCAACAACCGGCGACGACTCGCGGATGCGGGTTCACCAGCGGG
TACGGAAGGTGAGCGACGTGCACTGAGAGCACTGAGTAAGGCTGGTGGGA
CATGGTCAAGTGCGTTGAATGAGCCACCGGGACCGCCCTTGTCAGTGGTA
GATTCTGGAGGAGGAAGAGCAGGAGTGGCCGCCAGTAACGCCAAGCGAGC
AGAACACCAGGCAAGAATATGAAATGGAAAAAATAATATGAATATAATGC
GATACCGTTGCATTGGTAC
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protein sequence of NO09G01470.1

>NO09G01470.1-protein ID=NO09G01470.1-protein|Name=NO09G01470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=195bp
MMQPPPQLSKPSAAKAALPQQHHNALPDDETRFIIELEFVQCLANADYLH
WLALNKYLDDPAFVVFLRYLNYWRRPEYARFLVYPQTLAVLELLGRAEVR
KEIGRVQYKDFLQDQQLLQWRFYLNNRRRLADAGSPAGTEGERRALRALS
KAGGTWSSALNEPPGPPLSVVDSGGGRAGVAASNAKRAEHQARI*
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mRNA from alignment at chr9:470977..471795+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G01470.1 ID=NO09G01470.1|Name=NO09G01470.1|organism=Nannochloropsis oceanica|type=mRNA|length=819bp|location=Sequence derived from alignment at chr9:470977..471795+ (Nannochloropsis oceanica)
CCGAGGACCGAGGAGTGAGGCATCATGAAATATCGTCAAGCGACAACCAT
TACTTTTTCACACTCCTTGCCCCTTCGCCGTGGTTGCCCTCGTTTGCACG
GTTGTCGAATGCCTGTCGTTAACACCTGTACTTATTTGTTCATCTTTCTA
TTCTCTGGACAACACGCTAGTACACAGAGACACAATCATGATGCAGCCAC
CGCCTCAGCTTTCCAAACCCAGTGCTGCCAAAGCTGCACTACCCCAACAA
CATCACAATGCCTTGCCCGACGACGAAACCCGCTTCATCATTGAGCTGGA
GTTCGTGCAGTGCCTGGCCAATGCCGACTACTTGCATTGGCTCGCCCTCA
ACAAATACCTGGACGACCCGGCCTTCGTCGTCTTCCTACGCTATCTCAAT
TACTGGCGCCGACCGGAGTACGCACGATTTCTGGTTTATCCCCAGACCTT
GGCCGTGCTTGAGCTGTTGGGACGAGCAGAAGTTCGAAAAGAGATAGGAA
GGGTTCAGTATAAGGATTTTCTGCAGGACCAGCAATTGCTGCAGTGGCGG
TTCTACCTCAACAACCGGCGACGACTCGCGGATGCGGGTTCACCAGCGGG
TACGGAAGGTGAGCGACGTGCACTGAGAGCACTGAGTAAGGCTGGTGGGA
CATGGTCAAGTGCGTTGAATGAGCCACCGGGACCGCCCTTGTCAGTGGTA
GATTCTGGAGGAGGAAGAGCAGGAGTGGCCGCCAGTAACGCCAAGCGAGC
AGAACACCAGGCAAGAATATGAAATGGAAAAAATAATATGAATATAATGC
GATACCGTTGCATTGGTAC
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Coding sequence (CDS) from alignment at chr9:470977..471795+

>NO09G01470.1 ID=NO09G01470.1|Name=NO09G01470.1|organism=Nannochloropsis oceanica|type=CDS|length=585bp|location=Sequence derived from alignment at chr9:470977..471795+ (Nannochloropsis oceanica)
ATGATGCAGCCACCGCCTCAGCTTTCCAAACCCAGTGCTGCCAAAGCTGC
ACTACCCCAACAACATCACAATGCCTTGCCCGACGACGAAACCCGCTTCA
TCATTGAGCTGGAGTTCGTGCAGTGCCTGGCCAATGCCGACTACTTGCAT
TGGCTCGCCCTCAACAAATACCTGGACGACCCGGCCTTCGTCGTCTTCCT
ACGCTATCTCAATTACTGGCGCCGACCGGAGTACGCACGATTTCTGGTTT
ATCCCCAGACCTTGGCCGTGCTTGAGCTGTTGGGACGAGCAGAAGTTCGA
AAAGAGATAGGAAGGGTTCAGTATAAGGATTTTCTGCAGGACCAGCAATT
GCTGCAGTGGCGGTTCTACCTCAACAACCGGCGACGACTCGCGGATGCGG
GTTCACCAGCGGGTACGGAAGGTGAGCGACGTGCACTGAGAGCACTGAGT
AAGGCTGGTGGGACATGGTCAAGTGCGTTGAATGAGCCACCGGGACCGCC
CTTGTCAGTGGTAGATTCTGGAGGAGGAAGAGCAGGAGTGGCCGCCAGTA
ACGCCAAGCGAGCAGAACACCAGGCAAGAATATGA
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Synonyms
Publications