NO09G01340, NO09G01340 (gene) Nannochloropsis oceanica

Overview
NameNO09G01340
Unique NameNO09G01340
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1878
Alignment locationchr9:439870..441747 +

Link to JBrowse

Properties
Property NameValue
DescriptionOrn/Lys/Arg decarboxylase
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:439870..441747 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR036633Prn/Lys/Arg_de-COase_C_sf
IPR015424PyrdxlP-dep_Trfase
IPR000310Orn/Lys/Arg_deCO2ase_major_dom
IPR008286Prn/Lys/Arg_de-COase_C
Homology
BLAST of NO09G01340 vs. NCBI_GenBank
Match: EWM27635.1 (Orn/Lys/Arg decarboxylase [Nannochloropsis gaditana])

HSP 1 Score: 756.9 bits (1953), Expect = 4.900e-215
Identity = 400/578 (69.20%), Postives = 453/578 (78.37%), Query Frame = 0
Query:   53 RRWTSQEERQQVEQSKTPLVEALALAATRIKAPFFFPGHKMGRGLPVGLSGPFARSAADADVVAKRRHVRDSVWQHDLPEIPELDNLFAPEGPIQEAEMLAAQAFGGAQRTWFLVNGSTAG--XXXXXXXXXXXXXXXXXXXXXGASRISKVLLPRNVHKSAINGLILAGADPVFLSPVYDKEWDICHGIPIDGEGGLDDALKVHGPGGDIAAVLLVSPTYHGVIMDIKQAALLCARYKVPLIVDEAHGAHLAFLERD-GQTAAIKPAAAAALEGALALGADLVVQSTHKTLTAVSQCAMMHAGNGPLVDEGLLEFVGSALQFVQSSSPNYVLLASLDGARWQLAAPAGEGRGALRQAQVLAKKAKQLLRSETPFPVLDLPVVGSMRGAFVGLDPLRVTVGMMGTRMSGFDADEVLIEEHGVYAELPASRTLTFAVGPGNVDEDVERLVAAFKALAASLQEIELKEGKK--GKDMTPNVVVEFPAFDGQQAAVGTRRCGPREAYFTASEVMSTSDASIVGRASAETVCPYPPGIPVLLPGELITTEVLRFLQGVLDAGGSVTGCSDPSLGMLRVLCLE 626
            RRW  +      +QSK+P+VEAL+LAA RIKAPFFFPGHKMGRGLPVGL GPFA +      + K R  RD VWQHDLPEIPELDNLFAPEGPI++AE LAA+ FGGAQRTWFLVNGSTAG                       G S  SKVLLPRNVHKSAINGLIL+GA PVFLSPVYD  WDICHG+PI  E  L  AL+ H  G ++AAVLLVSPTYHG +MDI+QAALLCA++KVPLIVDEAHGAHLAFLE +  +   + P A+ A+ GALA GADLVVQSTHKTLTAVSQCAMMHAG GPLVD  +LEFVGSALQ VQSSSPNYVLLASLDGARWQL +P G GR AL +AQ LA KAK+LL  ETPFP+L  P      GAFVGLDPLR+TVG MGT MSGFDADEVLIEEHGVYAELPASRTLTFAVGPG+ +ED++ LVAAFKAL A+L +   ++G +    +   + + +FP FDG+QAA G+ +CGPR+AYFTASEV+ST+D  +VGRASAETVCPYPPGIPVLLPGE+IT EVLRFL+GVL  GGSVTGCSDPSLG +RVLC E
Sbjct:   45 RRWARE---HGADQSKSPIVEALSLAAARIKAPFFFPGHKMGRGLPVGLPGPFAETNT---ALNKTRVHRDDVWQHDLPEIPELDNLFAPEGPIRDAETLAAETFGGAQRTWFLVNGSTAGVLAALLALVRRHQQEGQQHPARSGRSIQSKVLLPRNVHKSAINGLILSGAVPVFLSPVYDPAWDICHGVPI--ESALQQALEEHASGSEVAAVLLVSPTYHGAVMDIEQAALLCAKFKVPLIVDEAHGAHLAFLEVEVNEPGNVGPLASRAMTGALAQGADLVVQSTHKTLTAVSQCAMMHAGKGPLVDSAMLEFVGSALQLVQSSSPNYVLLASLDGARWQLGSPLGGGRAALHRAQKLAAKAKRLLLEETPFPILK-PPDRPKGGAFVGLDPLRLTVGTMGTGMSGFDADEVLIEEHGVYAELPASRTLTFAVGPGSEEEDIDCLVAAFKAL-ATLVDKGKRDGSQDMAGEEASSFMTDFPPFDGKQAAAGSLKCGPRDAYFTASEVLSTNDERVVGRASAETVCPYPPGIPVLLPGEIITVEVLRFLKGVLSTGGSVTGCSDPSLGKIRVLCWE 612          
BLAST of NO09G01340 vs. NCBI_GenBank
Match: WP_017720910.1 (hypothetical protein [Oscillatoria sp. PCC 10802])

HSP 1 Score: 387.5 bits (994), Expect = 7.900e-104
Identity = 245/558 (43.91%), Postives = 318/558 (56.99%), Query Frame = 0
Query:   65 EQSKTPLVEALALAATRIKAPFFFPGHKMGRGLPVGLSGPFARSAADADVVAKRRHVRDSVWQHDLPEIPELDNLFAPEGPIQEAEMLAAQAFGGAQRTWFLVNGSTAGXXXXXXXXXXXXXXXXXXXXXGASRISKVLLPRNVHKSAINGLILAGADPVFLSPVYDKEWDICHGIPIDGEGGLDDALKVHGPGGDIAAVLLVSPTYHGVIMDIKQAALLCARYKVPLIVDEAHGAHLAFLERDGQTAAIKPAAAAALEGALALGADLVVQSTHKTLTAVSQCAMMHAGNGPLVDEGLLEFVGSALQFVQSSSPNYVLLASLDGARWQLAAPAGEGRGALRQAQVLAKKAKQLLRSETPFPVLDLPVVGSMRGAFVGLDPLRVTVGMMGTRMSGFDADEVLIEEHGVYAELPASRTLTFAVGPGNVDEDVERLVAAFKALAASLQEIELKEGKKGKDMTPNVVVEFPAFDGQQAAVGTRRCGPREAYFTASEVMSTSDASIVGRASAETVCPYPPGIPVLLPGELITTEVLRFLQGVLDAGGSVTGCSDPSLGMLRVL 623
            +Q++ PL+EAL   A R  APF+ PGHK GRG+P  L          AD++ K      +V++ DLPE+PELDNLFAPEG I+EA+ LAAQAFG AQ TWFLVNGST G                       +   K++LPRNVH+SAI+GL+L+GA PVF+SP YD  WD+ + I      G+ +AL  H    D  AV++V PTYHGV  D+   A L  R+ +PL+ DEAHG H AF           P   +    ALA GADL VQS HK L+A++Q +M+H   G  +D    + V  ALQ VQS+SP+Y+LLASLD AR Q+A    +G   L QA  LA+ A+  L       VL  P   ++   F  LD  R+TV   G  +SG++ADE+L  + GV AELP  R LTF V  GN   D+E+LV  F  LA   + +E      G  + P              +       PREA+F  +E + +  A    R SAE VCPYPPG+PVL+PGE+ITT  L +LQ VL +GG+VTGC DPSL  L+V+
Sbjct:   10 DQTRAPLLEALQELAHRQHAPFYAPGHKRGRGIPQPL----------ADLLGK------TVFEADLPELPELDNLFAPEGAIREAQQLAAQAFGAAQ-TWFLVNGSTGGIIASILAT--------------CAAGDKIILPRNVHRSAISGLVLSGAVPVFVSPEYDPAWDLANSIT---PAGVAEALDRH---PDAKAVMVVYPTYHGVCGDVAAIAELAHRHGIPLLADEAHGPHFAF----------HPDLPSP---ALAAGADLTVQSAHKVLSAMTQASMLHV-RGDRIDR---QRVSKALQLVQSTSPSYLLLASLDAARQQMAT---QGEQLLAQALELAEGARSRLAQIPGLSVLQPPSPEAVTPGFAALDRTRLTVSAAGLGLSGYEADEILHGQLGVTAELPCLRQLTFIVSAGNTPADIEQLVRGFTTLAEKEKRLEAGLSCAGVPVLP-------------CSPAAPALTPREAFFAETETLQSERA--CHRISAEIVCPYPPGVPVLVPGEIITTAALDYLQRVLSSGGTVTGCGDPSLQTLKVV 495          
BLAST of NO09G01340 vs. NCBI_GenBank
Match: WP_046279676.1 (aminotransferase class V-fold PLP-dependent enzyme [Limnoraphis robusta] >KKD37034.1 lysine decarboxylase [Limnoraphis robusta CS-951])

HSP 1 Score: 370.9 bits (951), Expect = 7.600e-99
Identity = 231/558 (41.40%), Postives = 314/558 (56.27%), Query Frame = 0
Query:   64 VEQSKTPLVEALALAATRIKAPFFFPGHKMGRGLPVGLSGPFARSAADADVVAKRRHVRDSVWQHDLPEIPELDNLFAPEGPIQEAEMLAAQAFGGAQRTWFLVNGSTAGXXXXXXXXXXXXXXXXXXXXXGASRISKVLLPRNVHKSAINGLILAGADPVFLSPVYDKEWDICHGIPIDGEGGLDDALKVHGPGGDIAAVLLVSPTYHGVIMDIKQAALLCARYKVPLIVDEAHGAHLAFLERDGQTAAIKPAAAAALEGALALGADLVVQSTHKTLTAVSQCAMMHAGNGPLVDEGLLEFVGSALQFVQSSSPNYVLLASLDGARWQLAAPAGEGRGALRQAQVLAKKAKQLLRSETPFPVLDLPVVGSMRGAFVGLDPLRVTVGMMGTRMSGFDADEVLIEEHGVYAELPASRTLTFAVGPGNVDEDVERLVAAFKALAASLQEIELKEGKKGKDMTPNVVVEFPAFDGQQAAVGTRRCGPREAYFTASEVMSTSDASIVGRASAETVCPYPPGIPVLLPGELITTEVLRFLQGVLDAGGSVTGCSDPSLGMLRV 622
            ++Q+K PLVE L   A R  A F+ PGHK G+G+      P  ++            +   V++ DLPE+PELDNLFAPEG I+EA+ LAA+AF GA++TWFLVNGST+G                           ++++PRNVH+S I+GLIL+GA P+F+ P YD  WD+ + I  D    L  AL  H    D+ AVL V PTYHG+  +IKQ A +  +Y +PL+VDEAHG H  F           P    A   AL  GADLVVQS HK L A++Q +M+H     +     L  +  ALQ VQSSSPNY+LLASLD AR Q+A    +GR  + Q   LA KA+ LL       VL+LP   S + +F  LDP R+T+ +    ++G+ ADE+L ++  V AELP+ + LTF +  GN + ++E+LV+AF  L+                   N  V  P F      +   +  PREA+  AS+  S  D   +G  SAE +CPYPPGIP+L+PGE IT E + +LQ +L  GG +TGCSDP+L  L++
Sbjct:    2 LDQTKAPLVETLQTLANRPHAAFYAPGHKQGQGI-----NPLLQTV-----------LGSKVFRADLPELPELDNLFAPEGVIKEAQELAAEAF-GAEQTWFLVNGSTSGIIAAILATCRTG--------------DQIIVPRNVHQSVISGLILSGAIPIFIQPEYDTHWDLAYSITTD---ALKAALNQH---SDVKAVLAVYPTYHGICGEIKQLAAITHQYNIPLLVDEAHGPHFHF----------HPDFPIA---ALTAGADLVVQSIHKVLGAMTQASMLHVQGNKI----NLNRLNQALQMVQSSSPNYLLLASLDAARQQMAT---QGRFLMEQTLNLAAKARILLDKIPKISVLELP--KSKQTSFTELDPTRLTIKISDLGLTGYQADEILHQQFKVTAELPSLKHLTFIISLGNTEANIEQLVSAFTQLST----------------MGNFQVVNPEFPLPPGFLPAMQLSPREAFEAASQRRSVQDC--LGCISAEIICPYPPGIPILMPGEQITLEAITYLQNILAGGGIITGCSDPTLETLKI 482          
BLAST of NO09G01340 vs. NCBI_GenBank
Match: CBJ27997.1 (decarboxylase [Ectocarpus siliculosus])

HSP 1 Score: 370.5 bits (950), Expect = 9.900e-99
Identity = 243/602 (40.37%), Postives = 312/602 (51.83%), Query Frame = 0
Query:   64 VEQSKTPLVEALALAATRIKAPFFFPGHKMGRGLPVGLSGPFARSAADADVVAKRRHVRDSVWQHDLPEIPELDNLFAPEGPIQEAEMLAAQAFGGAQRTWFLVNGSTAG-------XXXXXXXXXXXXXXXXXXXXXGASRISKVLLPRNVHKSAINGLILAGADPVFLSPVYDKEWDICHGIPIDGEGGLDDALKVHGPGGDIAAVLLVSPTYHGVIMDIKQAALLCARYKVPLIVDEAHGAHLAFL-------------------ERDGQTAAIKPAAAAALEGALALGADLVVQSTHKTLTAVSQCAMMHAGNGPLVDE----------------GLLEFVGSALQFVQSSSPNYVLLASLDGARWQLAAPAGEGRGALRQAQVLAKKAKQLLRSETPFPVLDLPVVGSMRGAFVGLDPLRVTVGMMGTRMSGFDADEVLIEEHGVYAELPASRTLTFAVGPGNVDEDVERLVAAFKALAASLQEIELKEGKKGKDMTPNVVVEFPAFDGQQAAVGTR-RCGPREAYFTASEVMSTSDASIVGRASAETVCPYPPGIPVLLPGELITTEVLRFLQGVLDAGGSVTGCSDPSLGMLRVL 623
            + Q  TPLV+ALA AA  +++P FFPGHKMG G P  L         DA              +HDLPE+PELDNLFAPEGPI++AE+LAA AFG A +TW L NGST G                            G  R + V+LPR+ HKSA++ L+L+GA P FL P+   E  +  G+   G   L  ALK H  G ++AAV +VSPTY G   D+  AA  C    VPL+VDEAHGAHLAFL                                +     AL  GADLVVQS HKTL +++Q A +H G G +                    +   V  AL  VQSSSP+Y+LLASLD ARW LA      +  LR+A  +A   ++ L S     VLDL          VG DPLR+TV + G  + G++ADE+LIE+ GVYAELP    +TF  GPG+  E  +RL  A + +A    E   ++G                         ++  C PREA+F  S+ +S  DA  +G+ASAETVCPYPPGIP LLPGE+IT   L  L  V ++GG ++GCSD +L  +RV+
Sbjct:   68 LNQDSTPLVDALAEAAGNVRSPLFFPGHKMGSGAPSRLVDLILGGKLDA-------------LRHDLPELPELDNLFAPEGPIRDAELLAADAFGAA-KTWMLANGSTCGVLASIIACVQWHNSRAGGAPLADAPAGSGGGRKNVVILPRDAHKSAVHALVLSGATPCFLPPLRHPESGVGLGV---GTAELKAALKEH--GDEVAAVFMVSPTYEGACSDVNSAAEACHGAGVPLVVDEAHGAHLAFLGEAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFYPRAALRCGADLVVQSAHKTLGSLTQSAFLHLGPGGVFASXXXXXXXXXXXXXXXFSIERAVSDALATVQSSSPSYLLLASLDAARWDLAGTDKNAKRRLREAARIADGVREELSSVEGINVLDLGGEKGSAAGCVGTDPLRLTVSLEG-GVGGYEADEILIEDFGVYAELPGPDYVTFVFGPGSTVEHGQRLAEALRHVAL---EATSRQGSXXXXXXXXXXXXXXXXXXXPVPPPSKLMCTPREAFFAPSKTVSAVDA--IGQASAETVCPYPPGIPALLPGEVITQAALDALAAVKESGGVISGCSDATLATMRVV 644          
BLAST of NO09G01340 vs. NCBI_GenBank
Match: WP_015205041.1 (aminotransferase class V-fold PLP-dependent enzyme [Crinalium epipsammum] >AFZ14945.1 arginine decarboxylase [Crinalium epipsammum PCC 9333])

HSP 1 Score: 370.5 bits (950), Expect = 9.900e-99
Identity = 232/565 (41.06%), Postives = 318/565 (56.28%), Query Frame = 0
Query:   63 QVEQSKTPLVEALALAATRIKAPFFFPGHKMGRGLPVGLSGPFARSAADADVVAKRRHVRDSVWQHDLPEIPELDNLFAPEGPIQEAEMLAAQAFGGAQRTWFLVNGSTAGXXXXXXXXXXXXXXXXXXXXXGASRISKVLLPRNVHKSAINGLILAGADPVFLSPVYDKEWDICHGIPIDGEGGLDDALKVHGPGGDIAAVLLVSPTYHGVIMDIKQAALLCARYKVPLIVDEAHGAHLAFLERDGQTAAIKPAAAAALEGALALGADLVVQSTHKTLTAVSQCAMMHAGNGPLVDEGLLEFVGSALQFVQSSSPNYVLLASLDGARWQLAAPAGEGRGALRQAQVLAKKAKQLLRSETPFPVLDLPVVGSMRGAFVGLDPLRVTVGMMGTRMSGFDADEVLIEEHGVYAELPASRTLTFAVGPGNVDEDVERLVAAFKALAASLQEIELKEGKKGKDMTPNVVVEFPAFDGQQAAVGTRRCGPREAYFTASEVMSTSD-----ASIVGRASAETVCPYPPGIPVLLPGELITTEVLRFLQGVLDAGGSVTGCSDPSLGMLRVL 623
            Q  Q+KTP+++ L   A +  A F+ PGHK G+G+   L          AD++       +SV++ DLPE+PELDNLFAPEG I+EA+ LAA+AF GA+ TWFLVNGSTAG                           K++LPRNVH+SAI GLI++GA P+F++P YD   DI H I  D       ALK H    D  AV++V PTY+GV  D+K  A +  +Y +PL+VDEAHGAH AF         + P+       AL+ GADL VQS HK L A +Q AM+H   G  VD   +  V  ALQ +QS+SP+Y+LLASLD AR Q+A     G   + +  +LAK A+  +R      VL+   +      F  LDP R+TV + G  +SGF+ADE+L  + GV AELP+ + LTF +  GN  ED+E L+ AF  L+   Q+  L        + P+    +      +  +G  R  PREA+F  +E +   +       +    SAE +CPYPPGIPVL+PGE IT   + +LQ ++  GGS+TGCSD +L  ++V+
Sbjct:    3 QESQAKTPILDTLRECANKPHAAFYTPGHKRGQGIYPQL----------ADLLG------ESVFRADLPELPELDNLFAPEGVIKEAQQLAAEAF-GAEHTWFLVNGSTAGVMAAILATCGSG--------------DKIILPRNVHQSAIAGLIISGAIPIFVNPEYDPILDIAHSITPDAVAA---ALKQH---PDAKAVMMVYPTYYGVCGDVKAIAHITHQYNIPLLVDEAHGAHFAF------HPELPPS-------ALSAGADLTVQSIHKVLGAFTQAAMLHV-QGSKVD---INRVSKALQLLQSTSPSYLLLASLDAARQQMAL---HGHQLMAKTLLLAKLARNQIRQIPGLSVLETEHIQLNEAGFFALDPTRLTVTVSGLGISGFEADEILHTQLGVTAELPSLQHLTFIISLGNTSEDIEHLIQAFTTLSKDYQQESLLVETPSSGVVPD---WYSVGLFTEETIGVARISPREAFFVPAETLPIENIWDTCGGLHPYISAELICPYPPGIPVLMPGEQITPSAIEYLQQIIKLGGSITGCSDRTLKTIKVV 507          
BLAST of NO09G01340 vs. NCBI_GenBank
Match: WP_106217653.1 (aminotransferase class V-fold PLP-dependent enzyme [Cyanosarcina burmensis] >PSB45308.1 arginine decarboxylase [Cyanosarcina cf. burmensis CCALA 770])

HSP 1 Score: 360.9 bits (925), Expect = 7.900e-96
Identity = 231/565 (40.88%), Postives = 318/565 (56.28%), Query Frame = 0
Query:   64 VEQSKTPLVEALALAATRIK-APFFFPGHKMGRGLPVGLSGPFARSAADADVVAKRRHVRDSVWQHDLPEIPELDNLFAPEGPIQEAEMLAAQAFGGAQRTWFLVNGSTAGXXXXXXXXXXXXXXXXXXXXXGASRISKVLLPRNVHKSAINGLILAGADPVFLSPVYDKEWDICHGIPIDGEGGLDDALKVHGPGGDIAAVLLVSPTYHGVIMDIKQAALLCARYKVPLIVDEAHGAHLAFLERDGQTAAIKPAAAAALEGALALGADLVVQSTHKTLTAVSQCAMMHAGNGPLVDEGLLEFVGSALQFVQSSSPNYVLLASLDGARWQLAAPAGEGRGALRQAQVLAKKAKQLLRSETPFPVLDLPVVGSMRGAFVGLDPLRVTVGMMGTRMSGFDADEVLIEEHGVYAELPASRTLTFAVGPGNVDEDVERLVAAFKALAASLQEIELKEGKKGKDMTPNVVVEFP-AFDGQQA----AVGTRRCGPREAYFTASEVMSTSDASIVGRASAETVCPYPPGIPVLLPGELITTEVLRFLQGVLDAGGSVTGCSDPSLGMLRVL 623
            + Q+KTP++EAL   ATRI  APF+ PGHK G G+   L   F +                +++  DLPE+PELDNLFAP+G IQEA+ LAA AF GA++TWFLVNGST G                           K++LPRNVH SAI GLIL+GA P+F++P YD   DI H I  +       AL  H    D  AVL+V PTY+GV  D+   A +  ++ +PL+VDEAHG+H AF              +     ALA GADL VQSTHK L A++Q +M+H  +G  +D   L     +LQ +QS+SP+Y+LLASLD AR Q+A     G   + +A  LA +A+  +       VL LP   S    FV LD  R+TV + G  ++GF+ADE+L +E GV AELP+ + LTF +  GN   D+ERLV  F  LA    ++  K   K ++      ++ P +F  +++     +      PREA+F  +E +         R SAE +CPYPPGIP+L+PGE+IT+E L +LQ +  + G +TGC++PSL  L+V+
Sbjct:    6 ISQAKTPILEALWQCATRINHAPFYTPGHKRGEGITQQLVNYFGK----------------AIFSADLPELPELDNLFAPQGIIQEAQELAAVAF-GAEKTWFLVNGSTCGVEAAILATCGVG--------------DKIILPRNVHNSAIAGLILSGAVPIFIAPAYDPVLDIAHSITPEAVAA---ALAAH---PDAKAVLMVYPTYYGVCGDLNAIAAVVHQHNIPLLVDEAHGSHFAF-------------HSELPTPALAAGADLSVQSTHKVLGALTQASMLHV-SGNRIDRDRL---NKSLQLLQSTSPSYLLLASLDAARQQMAL---YGEELMTKALRLADEARNRISQIPNLSVLQLPAKSS---GFVALDETRLTVTVSGLGIAGFEADEILHQELGVTAELPSLQNLTFIISLGNTVADIERLVEGFAVLAERSTQVSQKSKVKSQNQ-----LQIPNSFSRRRSEALFRIPNSLLTPREAFFAPTETLPFHQTR--DRISAELICPYPPGIPILMPGEIITSEALEYLQQIQASDGYITGCTEPSLAQLKVV 503          
BLAST of NO09G01340 vs. NCBI_GenBank
Match: OWY69424.1 (arginine decarboxylase [cyanobacterium TDX16])

HSP 1 Score: 360.5 bits (924), Expect = 1.000e-95
Identity = 234/560 (41.79%), Postives = 310/560 (55.36%), Query Frame = 0
Query:   64 VEQSKTPLVEALALAATRIK-APFFFPGHKMGRGLPVGLSGPFARSAADADVVAKRRHVRDSVWQHDLPEIPELDNLFAPEGPIQEAEMLAAQAFGGAQRTWFLVNGSTAGXXXXXXXXXXXXXXXXXXXXXGASRISKVLLPRNVHKSAINGLILAGADPVFLSPVYDKEWDICHGIPIDGEGGLDDALKVHGPGGDIAAVLLVSPTYHGVIMDIKQAALLCARYKVPLIVDEAHGAHLAFLERDGQTAAIKPAAAAALEGALALGADLVVQSTHKTLTAVSQCAMMHAGNGPLVDEGLLEFVGSALQFVQSSSPNYVLLASLDGARWQLAAPAGEGRGALRQAQVLAKKAKQLLRSETPFPVLDLPVVGSMRGAFVGLDPLRVTVGMMGTRMSGFDADEVLIEEHGVYAELPASRTLTFAVGPGNVDEDVERLVAAFKALAASLQEIELKEGKKGKDMTPNVVVEFPAFDGQQAAVGTRRCGPREAYFTASEVMSTSDASIVGRASAETVCPYPPGIPVLLPGELITTEVLRFLQGVLDAGGSVTGCSDPSLGMLRVL 623
            + Q+KTP++EAL   ATRI  APF+ PGHK G G+   L   F +                +++  DLPE+PELDNLFAP+G IQEA+ LAA AF GA++TWFLVNGST G                           K++LPRNVH SAI GLIL+GA P+F++P YD   DI H I  +       AL  H    D  AVL+V PTY+GV  D+   A +  ++ +PL+VDEAHG+H AF           P        ALA GADL VQSTHK L A++Q +M+H  +G  +D   L     +LQ +QS+SP+Y+LLASLD AR Q+A     G   + +   LA +A+  +       VL LP   S    FV LD  R+TV + G  ++GF+ADE+L +E GV AELP+ + LTF +  GN   D+ERLV  F  LA         E +K K  + N           Q  +      PREA+F  +E +         R SAE +CPYPPGIP+L+PGE+IT+E L +LQ +  + G VTGC+DPSL  L+V+
Sbjct:    6 ISQAKTPILEALWQCATRINHAPFYTPGHKRGEGITQQLVNYFGK----------------AIFSADLPELPELDNLFAPQGIIQEAQELAAVAF-GAEKTWFLVNGSTCGVEAAILATCGVG--------------DKIILPRNVHNSAIAGLILSGAVPIFIAPAYDPVLDIAHSITPEAVAA---ALAAH---PDAKAVLMVYPTYYGVCGDLSAIAAVVHQHNIPLLVDEAHGSHFAF----------HPELPTP---ALASGADLSVQSTHKVLGALTQASMLHV-SGNRIDRDRL---NKSLQLLQSTSPSYLLLASLDAARQQMAL---YGEELMAKTLRLADEARNRISQIPDLSVLHLPAKSS---GFVALDETRLTVTVSGLGIAGFEADEILHQELGVTAELPSLQNLTFIISLGNTVADIERLVGGFAVLAERFN----PESQKSKVKSQN-----------QFRIPNSPLTPREAFFAPTETLPFHQTR--DRISAELICPYPPGIPILMPGEIITSEALEYLQQIQASDGYVTGCTDPSLTQLKVV 488          
BLAST of NO09G01340 vs. NCBI_GenBank
Match: WP_071102832.1 (aminotransferase class V-fold PLP-dependent enzyme [Moorea producens] >AOY79336.1 lysine decarboxylase [Moorea producens JHB])

HSP 1 Score: 359.4 bits (921), Expect = 2.300e-95
Identity = 231/562 (41.10%), Postives = 312/562 (55.52%), Query Frame = 0
Query:   66 QSKTPLVEALALAATRIKAPFFFPGHKMGRGLPVGLSGPFARSAADADVVAKRRHVRDSVWQHDLPEIPELDNLFAPEGPIQEAEMLAAQAFGGAQRTWFLVNGSTAGXXXXXXXXXXXXXXXXXXXXXGASRISKVLLPRNVHKSAINGLILAGADPVFLSPVYDKEWDICHGIPIDGEGGLDDALKVHGPGGDIAAVLLVSPTYHGVIMDIKQAALLCARYKVPLIVDEAHGAHLAF---LERDGQTAAIKPAAAAALEGALALGADLVVQSTHKTLTAVSQCAMMHAGNGPLVDEGLLEFVGSALQFVQSSSPNYVLLASLDGARWQLAAPAGEGRGALRQAQVLAKKAKQLLRSETPFPVLDLPVVGSMRGAFVGLDPLRVTVGMMGTRMSGFDADEVLIEEHGVYAELPASRTLTFAVGPGNVDEDVERLVAAFKALAASLQEIELKEGKKGKDMTPNVVVEFPAFDGQQAAVGTRR--CGPREAYFTASEVMSTSDASIVGRASAETVCPYPPGIPVLLPGELITTEVLRFLQGVLDAGGSVTGCSDPSLGMLRVL 623
            Q KTPL++AL  +A +  A F+ PGHK G+G+P  L          AD++ K      SV+Q DLPE+PELDNLFAPEG IQEA+ LAA AF GA +TWFLVNGST G                           K+LLPRN+H+SAI GL+L GA P+F++P YD   D+ + I       ++ AL  H    D  AV++V PTY G+  DIK  A +  ++ +PL+VDEAHG H AF   L  D                AL+ GADL VQSTHK L A++Q +M+H   G  +D    + +  ALQ VQS+SP+Y+LLASLD AR Q+A     G   + +   LA+ A+  +       VL+ P+       F  LDP R+T+ +   R+SGF+ADEVL ++ GV AELP  + LTF +  GN   D+++LV AF  LA +      K+               PAF   Q   G  +    PREA+F  ++ +  ++   + R SAE +CPYPPGIP L+PGE I +  + +LQ +L  GG +TGCSDPSL  L V+
Sbjct:    8 QEKTPLLDALRASAQKPHAAFYAPGHKQGKGIPEPL----------ADLLGK------SVFQADLPELPELDNLFAPEGVIQEAQDLAAAAF-GANKTWFLVNGSTCGVMAAIVATCYTG--------------DKILLPRNIHQSAIAGLVLCGAIPIFINPEYDPSTDVVYSIT---PTAVNQALNQH---PDTKAVMMVYPTYQGICGDIKAIAKIVHQHNIPLLVDEAHGPHFAFHPDLPLD----------------ALSAGADLTVQSTHKVLGAMTQASMLHI-QGNRID---AQRLSKALQLVQSTSPSYLLLASLDAARQQMAL---HGERLMSRTLQLAQDARSKISQIPGLSVLE-PIKPL---KFPALDPTRLTIRVTELRLSGFEADEVLHQQLGVTAELPTLQHLTFIISLGNTQTDIQQLVQAFTKLAQNNDNSSTKQ---------------PAFCNLQPPTGKLQPLLSPREAFFAPTQTLPVTET--INRISAELICPYPPGIPALMPGEQIKSTTIEYLQKILTLGGQITGCSDPSLQTLNVI 488          
BLAST of NO09G01340 vs. NCBI_GenBank
Match: WP_015156492.1 (aminotransferase class V-fold PLP-dependent enzyme [Chroococcidiopsis thermalis] >AFY89952.1 arginine decarboxylase [Chroococcidiopsis thermalis PCC 7203])

HSP 1 Score: 358.2 bits (918), Expect = 5.100e-95
Identity = 231/562 (41.10%), Postives = 313/562 (55.69%), Query Frame = 0
Query:   64 VEQSKTPLVEALALAATRIK-APFFFPGHKMGRGLPVGLSGPFARSAADADVVAKRRHVRDSVWQHDLPEIPELDNLFAPEGPIQEAEMLAAQAFGGAQRTWFLVNGSTAGXXXXXXXXXXXXXXXXXXXXXGASRISKVLLPRNVHKSAINGLILAGADPVFLSPVYDKEWDICHGIPIDGEGGLDDALKVHGPGGDIAAVLLVSPTYHGVIMDIKQAALLCARYKVPLIVDEAHGAHLAFLERDGQTAAIKPAAAAALEGALALGADLVVQSTHKTLTAVSQCAMMHAGNGPLVDEGLLEFVGSALQFVQSSSPNYVLLASLDGARWQLAAPAGEGRGALRQAQVLAKKAKQLLRSETPFPVLDLPVVGSMRGAFVGLDPLRVTVGMMGTRMSGFDADEVLIEEHGVYAELPASRTLTFAVGPGNVDEDVERLVAAFKALAASLQEIELKEGKKGKD--MTPNVVVEFPAFDGQQAAVGTRRCGPREAYFTASEVMSTSDASIVGRASAETVCPYPPGIPVLLPGELITTEVLRFLQGVLDAGGSVTGCSDPSLGMLRVL 623
            + Q+KTP++EAL   ATRI  APF+ PGHK G G+   L   F +                +++  DLPE+PELDNLFAP+G IQEA+ LAA AF GA++TWFLVNGST G                           K++LPRNVH SAI GLIL+GA P+F++P YD   DI H I  +       AL  H    D  AVL+V PTY+GV  D+   A +  ++ +PL+VDEAHG+H AF              +     ALA GADL VQSTHK L A++Q +M+H  +G  +D   L     +LQ +QS+SP+Y+LLASLD AR Q+A     G   + +A  LA +A+  +       VL +P   S    FV LD  R+TV + G  ++GF+ADE+L +E GV AELP+ + LTF +  GN   D+ERLV  F  LA    ++  K   K ++    PN V            +      PREA+F  +E +         R SAE +CPYPPGIP+L+PGE+IT+E L +LQ +  + G +TGC++PSL  L+V+
Sbjct:    6 ISQAKTPILEALWQCATRINHAPFYTPGHKRGEGITQQLVNYFGK----------------AIFSADLPELPELDNLFAPQGIIQEAQELAAVAF-GAEKTWFLVNGSTCGVEAAILATCGVG--------------DKIILPRNVHNSAIAGLILSGAVPIFIAPAYDPVLDIAHSITPEAVAA---ALAAH---PDAKAVLMVYPTYYGVCGDLNAIAAVVHQHNIPLLVDEAHGSHFAF-------------HSELPTPALAAGADLSVQSTHKVLGALTQASMLHV-SGNRIDRDRL---NKSLQLLQSTSPSYLLLASLDAARQQMAL---YGEELMTKALRLADEARNRISQIPNLSVLQMPAKNS---GFVALDETRLTVTVSGLGIAGFEADEILHQELGVTAELPSLQHLTFIISLGNTVADIERLVEGFAVLAERSTQVSQKSKVKSQNQLQIPNSVSR--RRSEALFRIPNSLLTPREAFFAPTETLPFHQTR--DRISAELICPYPPGIPILMPGEIITSEALEYLQQIQVSDGYITGCTEPSLTQLKVV 503          
BLAST of NO09G01340 vs. NCBI_GenBank
Match: WP_106167737.1 (aminotransferase class V-fold PLP-dependent enzyme [Chroococcidiopsis cubana] >PSB63350.1 arginine decarboxylase [Chroococcidiopsis cubana CCALA 043])

HSP 1 Score: 357.5 bits (916), Expect = 8.700e-95
Identity = 230/562 (40.93%), Postives = 311/562 (55.34%), Query Frame = 0
Query:   64 VEQSKTPLVEALALAATRIK-APFFFPGHKMGRGLPVGLSGPFARSAADADVVAKRRHVRDSVWQHDLPEIPELDNLFAPEGPIQEAEMLAAQAFGGAQRTWFLVNGSTAGXXXXXXXXXXXXXXXXXXXXXGASRISKVLLPRNVHKSAINGLILAGADPVFLSPVYDKEWDICHGIPIDGEGGLDDALKVHGPGGDIAAVLLVSPTYHGVIMDIKQAALLCARYKVPLIVDEAHGAHLAFLERDGQTAAIKPAAAAALEGALALGADLVVQSTHKTLTAVSQCAMMHAGNGPLVDEGLLEFVGSALQFVQSSSPNYVLLASLDGARWQLAAPAGEGRGALRQAQVLAKKAKQLLRSETPFPVLDLPVVGSMRGAFVGLDPLRVTVGMMGTRMSGFDADEVLIEEHGVYAELPASRTLTFAVGPGNVDEDVERLVAAFKALAASLQEIELKEGKKGKD--MTPNVVVEFPAFDGQQAAVGTRRCGPREAYFTASEVMSTSDASIVGRASAETVCPYPPGIPVLLPGELITTEVLRFLQGVLDAGGSVTGCSDPSLGMLRVL 623
            + Q+KTP++EAL   ATRI  APF+ PGHK G G+   L   F +                +++  DLPE+PELDNLFAP+G IQEA+ LAA AF GA++TWFLVNGST G                           K++LPRNVH SAI GLIL+GA P+F++P YD   DI H I  +       AL  H    D  AVL+V PTY+GV  D+   A +  ++ +PL+VDEAHG+H AF              +     ALA GADL VQSTHK L A++Q +M+H  +G  +D   L     +LQ +QS+SP+Y+LLASLD AR Q+A     G   + +   LA +A+  +       VL LP   S    FV LD  R+TV + G  ++GF+ADE+L +E GV AELP+ + LTF +  GN   D+ERLV  F  L     ++  K   K ++    PN V            +      PREA+F  +E +         R SAE +CPYPPGIP+L+PGE+IT+E L +LQ +  + G +TGC++PSL  L+V+
Sbjct:    6 ISQAKTPILEALWQCATRINHAPFYTPGHKRGEGITQQLVNYFGK----------------AIFSADLPELPELDNLFAPQGIIQEAQELAAVAF-GAEKTWFLVNGSTCGVEAAILATCGVG--------------DKIILPRNVHNSAIAGLILSGAVPIFIAPAYDPVLDIAHSITPEAVAA---ALAAH---PDAKAVLMVYPTYYGVCGDLNAIAAVVHQHNIPLLVDEAHGSHFAF-------------HSELPTPALAAGADLSVQSTHKVLGALTQASMLHV-SGNRIDRDRL---NKSLQLLQSTSPSYLLLASLDAARQQMAL---YGEELMAKTLRLADEARNRISQIPNLSVLHLPAKSS---GFVALDETRLTVTVSGLGIAGFEADEILHQELGVTAELPSLQNLTFIISLGNTVADIERLVEGFAVLGERSTQVSQKSKVKSQNQLQIPNSVSR--RRSEALFRIPNSLLTPREAFFAPTETLPFHQTR--DRISAELICPYPPGIPILMPGEIITSEALEYLQQIQASDGYITGCTEPSLAQLKVV 503          
The following BLAST results are available for this feature:
BLAST of NO09G01340 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM27635.14.900e-21569.20Orn/Lys/Arg decarboxylase [Nannochloropsis gaditan... [more]
WP_017720910.17.900e-10443.91hypothetical protein [Oscillatoria sp. PCC 10802][more]
WP_046279676.17.600e-9941.40aminotransferase class V-fold PLP-dependent enzyme... [more]
CBJ27997.19.900e-9940.37decarboxylase [Ectocarpus siliculosus][more]
WP_015205041.19.900e-9941.06aminotransferase class V-fold PLP-dependent enzyme... [more]
WP_106217653.17.900e-9640.88aminotransferase class V-fold PLP-dependent enzyme... [more]
OWY69424.11.000e-9541.79arginine decarboxylase [cyanobacterium TDX16][more]
WP_071102832.12.300e-9541.10aminotransferase class V-fold PLP-dependent enzyme... [more]
WP_015156492.15.100e-9541.10aminotransferase class V-fold PLP-dependent enzyme... [more]
WP_106167737.18.700e-9540.93aminotransferase class V-fold PLP-dependent enzyme... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL119nonsL119Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010623NSK010623Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G01340.1NO09G01340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589051gene_4420Nannochloropsis oceanica (N. oceanica CCMP1779)gene
OKR_DCgene2907Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G01340.1NO09G01340.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G01340 ID=NO09G01340|Name=NO09G01340|organism=Nannochloropsis oceanica|type=gene|length=1878bp
ATGCGGCTCCCTGCACTCCTTTCCTTCCTTCTTACCCTTTTAAATCCACT
ACAAACAACCTACGCCTTCGTCATCGTCCCCCGTCACCACCACCACTACC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTATTCATTCAAAGATCAA
TGTTCACGGAGATGGACAAGCCAAGAAGAACGACAGCAAGTGGAGCAGTC
AAAAACACCCCTGGTTGAGGCTCTCGCCCTAGCTGCCACGCGCATCAAAG
CTCCCTTTTTCTTCCCAGGTCATAAAATGGGACGCGGATTGCCTGTAGGG
CTTTCAGGACCCTTCGCACGAAGCGCAGCCGATGCCGATGTTGTTGCTAA
ACGTAGACATGTCAGGGATAGCGTGTGGCAGCATGACTTACCCGAGATTC
CAGAGCTCGATAATTTGTTCGCTCCCGAGGGGCCTATTCAAGAAGCGGAG
ATGTTGGCTGCGCAGGCATTTGGCGGGGCTCAGCGAACGTGGTTTCTGGT
CAATGGTAGTACCGCTGGGGTTCTGGCAGCATTGCTGGCAGTGGTACGAC
GCCATCAGCAGCAGCAGCAGCAACAACCTAATGGAGCATCACGAATTAGC
AAAGTGCTTCTTCCACGAAATGTGCACAAGTCAGCGATTAATGGTTTGAT
TCTTGCGGGAGCCGATCCAGTGTTTCTCAGTCCTGTCTATGACAAAGAAT
GGGATATTTGCCACGGCATCCCCATAGATGGTGAAGGTGGGTTGGATGAC
GCTTTAAAAGTACATGGCCCCGGTGGGGATATAGCTGCGGTACTTTTGGT
TTCGCCGACTTACCACGGTGTGATAATGGATATCAAACAAGCTGCCCTTC
TTTGTGCCAGGTACAAGGTTCCGCTTATTGTCGATGAGGCACATGGCGCC
CACTTAGCATTTCTGGAACGAGACGGGCAGACAGCAGCAATAAAACCAGC
AGCGGCTGCGGCACTGGAGGGGGCTTTGGCGCTAGGGGCGGACTTGGTGG
TGCAGAGCACGCACAAGACGCTGACGGCGGTGAGTCAGTGTGCGATGATG
CATGCAGGGAACGGTCCATTGGTTGATGAGGGATTGCTTGAGTTTGTGGG
TTCCGCTTTGCAGTTCGTCCAGAGCAGCTCGCCAAATTATGTGTTGCTGG
CTTCGTTGGACGGGGCAAGATGGCAGCTTGCGGCTCCAGCAGGGGAGGGG
AGGGGAGCTTTGCGACAGGCGCAGGTATTGGCGAAAAAGGCAAAGCAGTT
GTTGAGGAGCGAGACGCCATTTCCGGTTTTGGATCTGCCAGTAGTGGGGT
CGATGAGGGGAGCTTTTGTGGGGTTGGACCCTCTCAGAGTTACGGTTGGA
ATGATGGGGACGAGGATGAGTGGGTTTGATGCGGACGAGGTCTTGATTGA
GGAGCATGGGGTATATGCAGAGTTACCGGCATCGAGGACATTGACTTTTG
CGGTCGGCCCAGGGAACGTGGATGAGGACGTGGAGAGATTAGTTGCTGCA
TTTAAGGCTTTGGCCGCCTCTTTGCAGGAGATAGAGCTAAAGGAAGGAAA
GAAGGGCAAGGACATGACCCCAAATGTCGTCGTTGAGTTTCCCGCCTTTG
ATGGGCAGCAAGCAGCGGTGGGCACCCGGCGGTGTGGGCCCCGTGAAGCT
TATTTCACAGCATCTGAGGTAATGTCGACGAGCGATGCGTCAATTGTGGG
GCGTGCGAGTGCAGAGACTGTTTGCCCCTATCCGCCCGGGATTCCTGTCT
TGTTGCCGGGGGAATTAATCACTACGGAGGTCCTGCGATTTTTGCAGGGG
GTACTGGATGCGGGAGGGTCGGTGACGGGGTGTAGTGATCCGAGCTTGGG
GATGCTAAGGGTGCTTTGCTTGGAGTAG
back to top

protein sequence of NO09G01340.1

>NO09G01340.1-protein ID=NO09G01340.1-protein|Name=NO09G01340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=626bp
MRLPALLSFLLTLLNPLQTTYAFVIVPRHHHHYQQQQQQQQQQQYSFKDQ
CSRRWTSQEERQQVEQSKTPLVEALALAATRIKAPFFFPGHKMGRGLPVG
LSGPFARSAADADVVAKRRHVRDSVWQHDLPEIPELDNLFAPEGPIQEAE
MLAAQAFGGAQRTWFLVNGSTAGVLAALLAVVRRHQQQQQQQPNGASRIS
KVLLPRNVHKSAINGLILAGADPVFLSPVYDKEWDICHGIPIDGEGGLDD
ALKVHGPGGDIAAVLLVSPTYHGVIMDIKQAALLCARYKVPLIVDEAHGA
HLAFLERDGQTAAIKPAAAAALEGALALGADLVVQSTHKTLTAVSQCAMM
HAGNGPLVDEGLLEFVGSALQFVQSSSPNYVLLASLDGARWQLAAPAGEG
RGALRQAQVLAKKAKQLLRSETPFPVLDLPVVGSMRGAFVGLDPLRVTVG
MMGTRMSGFDADEVLIEEHGVYAELPASRTLTFAVGPGNVDEDVERLVAA
FKALAASLQEIELKEGKKGKDMTPNVVVEFPAFDGQQAAVGTRRCGPREA
YFTASEVMSTSDASIVGRASAETVCPYPPGIPVLLPGELITTEVLRFLQG
VLDAGGSVTGCSDPSLGMLRVLCLE*
back to top
Synonyms
Publications