NO09G01290, NO09G01290 (gene) Nannochloropsis oceanica

Overview
NameNO09G01290
Unique NameNO09G01290
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2846
Alignment locationchr9:428816..431661 -

Link to JBrowse

Properties
Property NameValue
DescriptionPlastid transcriptionally active 2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:428816..431661 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
Homology
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BLAST of NO09G01290 vs. NCBI_GenBank
Match: EWM27654.1 (plastid transcriptionally active 2 [Nannochloropsis gaditana])

HSP 1 Score: 633.6 bits (1633), Expect = 8.200e-178
Identity = 333/687 (48.47%), Postives = 442/687 (64.34%), Query Frame = 0 
Query:  119 VPTVELENARINSMRREGHYIEVVEAVVEKWRAAAPPDAYSYSLAMNACAQMGDYQRSWKLLKRAEAVHSIPPTDWMWAALLKACARARRLDEALRVVADLEGRGVRLNSFMINTLMDAHARAGDWQGTLHLLEAHKPDLLQRSRGGVLAVERKTLTIAYTIAITALGRGRQWRRALEMLYVDMPRDGVTPDVVVYGSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLIVCNSALQAYYWSDAEHWREALSLLKEMEKGKYPQARPNHETYRVVFHVLGKFASASEARTFYDSLPPSIPPSAKIAAEVLLAYANADDGAGALAFLRHLQHAGPSPDGLCFSRAVLACGRAGMVEDAKELLHEMQSRDMLGHSRSAGMVERLSQEEAWEEAASLFSAITETFASTPDVTPGPVALNTGLRVFCSVGDWEGMECLMRQMAASGIQPTESNRAAALEAVGSAGQWPVSTFLLEEAVLLQYRNVGTSGFAAWAQGVPDKVLTVFGPAMYGRLYREGYVSHGHKEDGEDGEVQVVDFHGFGSRQSVCAVLALLQDM---EAALTAQKEEMKAHGRRSTTTTTDVITSDMEKSKDRTEVATGVAISDGTSSNAFSTATVVSTKTCSIRGLVMVVGRGKNSPTGASILAPYLVRALANPTFFVPPLVARQMPNNPGRIVLAKQEVSRYIKAQL 803
            VPTV  EN R+ +++R  +  E+V+ V   W AA  P+ +SYSLAMNACAQM +YQ++W+LL+RAE  H I P++WMW ALL AC RARRLDE L+V+  ++ RGVR+N+  +  L+DA+ R GDW+G L   E+HK DLL R   G    E+++LT+ +T  ITALGRGRQW RA ++L  +MPR+ V+PD+V YGS+                              ++ +  L AYYWSDA  WR A+ L  +ME+GKY +ARP     R  F VLGKFA A+EA  FY+ LP S      IAA+VLLAYAN  DG GAL FL+HL+  GP PDG+C S  VLACGRAG++EDA+ LL E +     G S+SA +++++S+ EA+EEA + +SAIT T    P   P PVA+NTGL VFC+VGDWE    ++RQMA+ G+QP E+NRA+ L A  SAGQWPV+T+LLEE   L+ +NVGTSGF AWAQGV D +LT FGPA+Y +L ++G V H HKE      V+VVDFHG G+RQ VCA+L LLQD+   EA   A+K  +++       +    +       K+  E+  G         N    A+  + +   +  +VMVVGRGK+S  G SIL P + +ALA P+ F PP+ AR +PNNPGRIVL++QEV +YI AQL
Sbjct:  123 VPTVRSENMRLLALKRSSNPAEIVKIVTNAWVAAEAPNEFSYSLAMNACAQMCNYQQAWELLRRAETTHRITPSEWMWGALLSACVRARRLDEVLKVINSMKSRGVRMNAHFVAQLVDAYGREGDWKGALLAFESHKADLL-RQYAGRSGHEKRSLTVCFTTLITALGRGRQWERARDVLLTEMPRESVSPDLVAYGSVMHSCGRARQWREVLALFNHLQSQAELEPSNVIIHFVLHAYYWSDAASWRGAVHLFNDMEQGKYARARPTAPICRTFFKVLGKFAPAAEAHAFYNKLPASYKNLTTIAADVLLAYANEKDGKGALTFLQHLREHGPEPDGICLSNVVLACGRAGLMEDAQALLQEARQSSPFGGSKSACLLDKMSKVEAFEEATAFYSAITHTIPDHPGAMPPPVAMNTGLHVFCNVGDWESAVKVLRQMASGGVQPIEANRASILLASSSAGQWPVATYLLEEGAFLRLKNVGTSGFEAWAQGVEDGILTAFGPALYRQLQQQGLVDHTHKESEAAKNVKVVDFHGLGARQCVCAILTLLQDLENAEALKAAKKRPLRSRSHEQVASKYGTLV-----PKNENELFHG-------HRNGRDFAS--TDERDPVPSIVMVVGRGKHSVAGVSILYPSISKALATPSLFEPPMNARPVPNNPGRIVLSRQEVKKYIDAQL 794
The following BLAST results are available for this feature:
BLAST of NO09G01290 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27654.18.200e-17848.47plastid transcriptionally active 2 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL119nonsL119Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010617NSK010617Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G01290.1NO09G01290.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589060gene_4425Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100059g3gene2902Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G01290.1NO09G01290.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G01290 ID=NO09G01290|Name=NO09G01290|organism=Nannochloropsis oceanica|type=gene|length=2846bp
ACAGGTATGCCAACAGCTCCATCAGGCTCAAGAAAAGGCAGCCTTGGGTC
CCTGGTGGCGTTGCTCCGCACCCGTAGAATCGTACAGCCCCACCAGCAGC
ACCACCAGCAGCAGCGTCGAACCCCCCTCAACACCCCAAGTACTCTCACC
ACCAGTACCTGTTGCACCCTGTTCCAATGTACACCTCTCGTTCAACCATA
CCGGCGCTTCTCAGCACCATCCTTGCTACCACTCAAAGCAGCGGCTCCAT
CGTCGTCGTCCCCGTCCCGCCTGTCCTCCTTTTCATCGCCTCCCGCCTCC
ACTTCCTCCGGACGCACCTCACCCAGCACACATTTTGCCAGCATCACTGC
TGCGCCGCGTGTTCCGACCGTCGAGCTGGAGAATGCACGAATCAATTCCA
TGCGACGTGAAGGTCATTACATTGAGGTGGTGGAGGCAGTCGTTGAGAAA
TGGCGGGCCGCGGCGCCGCCAGATGCGTATAGCTACTCTCTTGCAATGAA
TGCGTGTGCCCAAATGGGTGACTATCAACGATCGTGGAAGCTTTTAAAGC
GAGCTGAAGCTGTCCACAGCATTCCTCCCACTGATTGGATGTGGGCTGCC
CTACTTAAGGCCTGTGCACGGGCCCGTCGTCTAGACGAGGCGCTGCGGGT
CGTGGCAGATCTAGAGGGAAGGGGCGTGCGGCTGAATTCGTTCATGATAA
ATACGTTGATGGACGCACATGCCCGCGCCGGTGATTGGCAAGGCACCTTG
CATCTGCTCGAGGCGCACAAGCCGGACTTATTGCAACGGTCTAGAGGAGG
GGTTCTGGCGGTCGAGAGGAAGACCTTGACAATTGCTTACACCATAGCAA
TAACAGCGTTGGGCCGCGGTCGACAGTGGCGTCGAGCGCTTGAAATGCTG
TACGTAGATATGCCACGGGATGGAGTAACTCCGGACGTGGTTGTGTATGG
AAGTCTGATGCACGCTTGTGGAAGGGCACGACAGTGGACAGAAGTGGTCC
GCCTATTTCGTCACATGAAAGACACGGCCAAGCTATCTCCCAATCTCATC
GTGTGTAACTCTGCTCTGCAAGCTTATTACTGGAGCGACGCCGAGCACTG
GCGGGAGGCCTTGTCTCTACTGAAAGAGATGGAAAAGGGGAAGTATCCCC
AAGCACGACCAAATCATGAAACGTACCGGGTCGTCTTTCACGTCCTTGGG
AAATTCGCGAGTGCCTCCGAGGCTCGGACATTCTACGATAGCCTCCCTCC
CTCTATCCCCCCGTCGGCAAAGATAGCAGCAGAGGTCTTGCTAGCATATG
CCAATGCTGATGACGGTGCAGGGGCTCTTGCCTTCCTTCGGCACCTTCAG
CATGCTGGTCCTTCCCCTGACGGACTCTGTTTTTCACGGGCGGTCTTGGC
ATGTGGGAGGGCTGGAATGGTTGAGGACGCAAAAGAATTACTGCACGAGA
TGCAAAGTCGAGATATGCTCGGGCACTCGCGATCGGCAGGTATGGTTGAG
AGGCTGTCACAGGAGGAGGCATGGGAGGAAGCGGCTTCCCTGTTTTCGGC
TATTACCGAAACGTTTGCCTCGACTCCTGATGTAACCCCGGGCCCTGTAG
CGCTGAACACTGGTTTGCGCGTCTTCTGTAGTGTGGGGGATTGGGAGGGG
ATGGAGTGCTTGATGAGGCAGATGGCCGCCTCTGGCATTCAGCCGACGGA
GTCGAATCGTGCGGCGGCTTTAGAGGCCGTGGGTAGTGCGGGTCAGTGGC
CCGTGTCGACGTTTTTGTTGGAGGAAGCGGTGTTGTTACAGTATAGAAAC
GTAGGGACTAGTGGTTTTGCGGCATGGGCGCAGGGGGTGCCAGATAAAGT
TTTGACGGTGTTTGGCCCGGCTATGTATGGGCGGTTGTACCGGGAAGGGT
ATGTGAGTCATGGTCATAAAGAGGATGGGGAAGATGGAGAAGTGCAGGTG
GTGGATTTTCATGGGTTTGGGAGTCGGCAGAGTGTGTGTGCGGTATTGGC
GTTGTTGCAGGACATGGAGGCGGCTCTGACGGCGCAGAAGGAGGAGATGA
AGGCGCATGGACGAAGGAGCACCACCACCACCACCGATGTGATTACCAGC
GATATGGAGAAGAGTAAGGACAGGACGGAGGTGGCGACAGGCGTGGCGAT
ATCTGATGGCACATCAAGCAATGCGTTCAGCACCGCTACCGTCGTTTCGA
CGAAGACATGCTCAATCCGGGGTCTGGTCATGGTTGTAGGGCGGGGCAAG
AACAGTCCGACGGGCGCGAGCATCTTGGCACCCTACCTTGTCCGTGCGCT
TGCTAACCCCACCTTCTTTGTCCCTCCCCTCGTGGCGCGACAGATGCCTA
ACAATCCCGGTCGCATTGTCCTAGCGAAGCAGGAGGTTAGCAGATACATA
AAAGCACAGCTGAAAGGAGAAGGTAGATTATCGTGATGATGAAAAAAATA
GTCTAGAGATTCGAGATAACAAAAATTGATATAGAGATAAGGGAAAGGAG
AAGGAATTGAGATGCGTGTCTTATCTTAGGTCGTTACGAAGCATTGCACA
ATTGACACACTGTTGCATTCATCATTTAAGAAACAAGCTCGCGCACACCC
TGGATCGGGGAGTCGTAACCTGTGTTTTGATATGGTTTTGCTTGAAAAAC
TAAAAGGGAGGCGTCTGAGGCATTATTTCGAAAGATTGATGAGGTCGAGG
CAAAGGACGTGATGAAGATGGGCTATTTCTAAGTCAGCGTCAATTTCCGC
TGTGGGTAATGGCCTGGGAATAAATGTGCCAAAGTATGCTCAGGTCTTGC
AATGGTTTACACAATCAAAGGAAGAGGGGTGGGTGGGAGGGAGAGT
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protein sequence of NO09G01290.1

>NO09G01290.1-protein ID=NO09G01290.1-protein|Name=NO09G01290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=810bp
MPTAPSGSRKGSLGSLVALLRTRRIVQPHQQHHQQQRRTPLNTPSTLTTS
TCCTLFQCTPLVQPYRRFSAPSLLPLKAAAPSSSSPSRLSSFSSPPASTS
SGRTSPSTHFASITAAPRVPTVELENARINSMRREGHYIEVVEAVVEKWR
AAAPPDAYSYSLAMNACAQMGDYQRSWKLLKRAEAVHSIPPTDWMWAALL
KACARARRLDEALRVVADLEGRGVRLNSFMINTLMDAHARAGDWQGTLHL
LEAHKPDLLQRSRGGVLAVERKTLTIAYTIAITALGRGRQWRRALEMLYV
DMPRDGVTPDVVVYGSLMHACGRARQWTEVVRLFRHMKDTAKLSPNLIVC
NSALQAYYWSDAEHWREALSLLKEMEKGKYPQARPNHETYRVVFHVLGKF
ASASEARTFYDSLPPSIPPSAKIAAEVLLAYANADDGAGALAFLRHLQHA
GPSPDGLCFSRAVLACGRAGMVEDAKELLHEMQSRDMLGHSRSAGMVERL
SQEEAWEEAASLFSAITETFASTPDVTPGPVALNTGLRVFCSVGDWEGME
CLMRQMAASGIQPTESNRAAALEAVGSAGQWPVSTFLLEEAVLLQYRNVG
TSGFAAWAQGVPDKVLTVFGPAMYGRLYREGYVSHGHKEDGEDGEVQVVD
FHGFGSRQSVCAVLALLQDMEAALTAQKEEMKAHGRRSTTTTTDVITSDM
EKSKDRTEVATGVAISDGTSSNAFSTATVVSTKTCSIRGLVMVVGRGKNS
PTGASILAPYLVRALANPTFFVPPLVARQMPNNPGRIVLAKQEVSRYIKA
QLKGEGRLS*
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Synonyms
Publications