NO09G01260, NO09G01260 (gene) Nannochloropsis oceanica

Overview
NameNO09G01260
Unique NameNO09G01260
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1270
Alignment locationchr9:407072..408341 -

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Properties
Property NameValue
DescriptionRibonuclease H2 subunit B
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:407072..408341 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0032299ribonuclease H2 complex
Vocabulary: INTERPRO
TermDefinition
IPR019024RNase_H2_suB
Homology
BLAST of NO09G01260 vs. NCBI_GenBank
Match: PIN03701.1 (hypothetical protein CDL12_23776 [Handroanthus impetiginosus])

HSP 1 Score: 89.0 bits (219), Expect = 3.300e-14
Identity = 57/166 (34.34%), Postives = 85/166 (51.20%), Query Frame = 0
Query:   30 SSSSMHLGQVLALAHPRGGSPTQYLLTPSGHFCELQSFRPSGSKYGSWFIEQKVVSDGLLYVASPMDPKLLLLPVLEK------HGAAHFSPLEQILAAEADGLYMPLRTCQRLELHRMCDVNDQLGDDMILYRLNPEKVLTWLVSKVERTKRALVMLESAREGQN 190
            S+   H+G+ L+L HPR G+ T YL +  G   EL  F+ S   YGSWF+   V  DG LY A+P+DP  +LLP+ E+      +    F  L++I+       Y  L +     +  +CD+  ++G     +RLN  KVL WL  KV + K+ L  L+     +N
Sbjct:   19 STGGKHVGKFLSLRHPRTGNATCYLYS-DGLLQELHWFKQS---YGSWFLGDYVCEDGRLYTATPVDPVFILLPIFEEARMKKGNDPGKFRQLDEIIYIHGYPGYQSLSSIAEKTMQVVCDLK-EVGSTK-FFRLNDLKVLKWLCYKVHQLKQTLPTLDENYAARN 178          
BLAST of NO09G01260 vs. NCBI_GenBank
Match: XP_019170802.1 (PREDICTED: ribonuclease H2 subunit B [Ipomoea nil] >XP_019170803.1 PREDICTED: ribonuclease H2 subunit B [Ipomoea nil] >XP_019170804.1 PREDICTED: ribonuclease H2 subunit B [Ipomoea nil])

HSP 1 Score: 88.6 bits (218), Expect = 4.300e-14
Identity = 54/153 (35.29%), Postives = 77/153 (50.33%), Query Frame = 0
Query:   36 LGQVLALAHPRGGSPTQYLLTPSGHFCELQSFRPSGSKYGSWFIEQKVVSDGLLYVASPMDPKLLLLPVLE------KHGAAHFSPLEQILAAEADGLYMPLRTCQRLELHRMCDVNDQLGDDMILYRLNPEKVLTWLVSKVERTKRALVMLE 183
            +G++L+L HP+ G    YLL   G   E+  F+ S   YGSWF+   V  DG LY A+P+DP  +LLPV E      K     F  L++I+       Y  L +     +  +CD  +        +RLN EKV+ WL  KVE  ++ LV L+
Sbjct:   25 MGELLSLRHPKSGDKACYLLV-DGTLQEVHWFKHS---YGSWFLGDYVCEDGRLYTATPVDPVFVLLPVFEEARMKKKDDPGMFRQLDEIIYVSGYPGYQYLSSIAEKSMQVVCDFKEM--GSTKFFRLNDEKVIRWLCFKVEELRKTLVTLD 171          
BLAST of NO09G01260 vs. NCBI_GenBank
Match: XP_009764828.1 (PREDICTED: ribonuclease H2 subunit B isoform X1 [Nicotiana sylvestris])

HSP 1 Score: 88.2 bits (217), Expect = 5.600e-14
Identity = 58/159 (36.48%), Postives = 81/159 (50.94%), Query Frame = 0
Query:   30 SSSSMHLGQVLALAHPRGGSPTQYLLTPSGHFCELQSFRPSGSKYGSWFIEQKVVSDGLLYVASPMDPKLLLLPVLE------KHGAAHFSPLEQILAAEADGLYMPLRTCQRLELHRMCDVNDQLGDDMILYRLNPEKVLTWLVSKVERTKRALVMLE 183
            S     +GQ+L+L HP+ G+ T Y+    G   EL  F+ S   YGSWF+   V  D  LY A+P+DP  +LLP+ E      K     F  L++I        Y  L +     +  +CDV D +G+    YRLN EKVL WL  KV + K+ L+ L+
Sbjct:   77 SKDGNKVGQLLSLQHPKSGNATCYICV-DGALQELHWFKQS---YGSWFLGDYVCEDSRLYTATPVDPVFVLLPIFEEARMKKKDDLGKFRQLDEITYVVGYPGYQHLSSVAENCMQVVCDVKD-IGNTK-FYRLNDEKVLKWLCFKVIQLKKTLLTLD 229          
BLAST of NO09G01260 vs. NCBI_GenBank
Match: XP_009764829.1 (PREDICTED: ribonuclease H2 subunit B isoform X2 [Nicotiana sylvestris] >XP_016489495.1 PREDICTED: ribonuclease H2 subunit B-like isoform X2 [Nicotiana tabacum])

HSP 1 Score: 88.2 bits (217), Expect = 5.600e-14
Identity = 58/159 (36.48%), Postives = 81/159 (50.94%), Query Frame = 0
Query:   30 SSSSMHLGQVLALAHPRGGSPTQYLLTPSGHFCELQSFRPSGSKYGSWFIEQKVVSDGLLYVASPMDPKLLLLPVLE------KHGAAHFSPLEQILAAEADGLYMPLRTCQRLELHRMCDVNDQLGDDMILYRLNPEKVLTWLVSKVERTKRALVMLE 183
            S     +GQ+L+L HP+ G+ T Y+    G   EL  F+ S   YGSWF+   V  D  LY A+P+DP  +LLP+ E      K     F  L++I        Y  L +     +  +CDV D +G+    YRLN EKVL WL  KV + K+ L+ L+
Sbjct:   77 SKDGNKVGQLLSLQHPKSGNATCYICV-DGALQELHWFKQS---YGSWFLGDYVCEDSRLYTATPVDPVFVLLPIFEEARMKKKDDLGKFRQLDEITYVVGYPGYQHLSSVAENCMQVVCDVKD-IGNTK-FYRLNDEKVLKWLCFKVIQLKKTLLTLD 229          
BLAST of NO09G01260 vs. NCBI_GenBank
Match: KZN09527.1 (hypothetical protein DCAR_002183 [Daucus carota subsp. sativus])

HSP 1 Score: 88.2 bits (217), Expect = 5.600e-14
Identity = 53/151 (35.10%), Postives = 81/151 (53.64%), Query Frame = 0
Query:   37 GQVLALAHPRGGSPTQYLLTPSGHFCELQSFRPSGSKYGSWFIEQKVVSDGLLYVASPMDPKLLLLPVLEK-----HGAAHFSPLEQILAAEADGLYMPLRTCQRLELHRMCDVNDQLGDDMILYRLNPEKVLTWLVSKVERTKRALVMLE 183
            G +L+L HP+ G+PT YLLT  G+  E+  F+   + YGSWF+   V  DG LY A+P+DP  +LLP+ ++          F  L++I+  +    Y  L +     +  +CD   ++G     +RLN  KVL WL  KV + K+ L  L+
Sbjct:   26 GCLLSLCHPKTGNPTSYLLT-DGNLQEIHWFK---TAYGSWFLGDYVCEDGRLYAATPIDPVFILLPIFDEARMKGEDQGKFRQLDEIIFIQGYPGYQHLLSIADKSMQVVCDFK-EVGSTK-FFRLNDSKVLAWLHFKVHQLKQTLPTLD 170          
BLAST of NO09G01260 vs. NCBI_GenBank
Match: XP_016489494.1 (PREDICTED: ribonuclease H2 subunit B-like isoform X1 [Nicotiana tabacum])

HSP 1 Score: 88.2 bits (217), Expect = 5.600e-14
Identity = 58/159 (36.48%), Postives = 81/159 (50.94%), Query Frame = 0
Query:   30 SSSSMHLGQVLALAHPRGGSPTQYLLTPSGHFCELQSFRPSGSKYGSWFIEQKVVSDGLLYVASPMDPKLLLLPVLE------KHGAAHFSPLEQILAAEADGLYMPLRTCQRLELHRMCDVNDQLGDDMILYRLNPEKVLTWLVSKVERTKRALVMLE 183
            S     +GQ+L+L HP+ G+ T Y+    G   EL  F+ S   YGSWF+   V  D  LY A+P+DP  +LLP+ E      K     F  L++I        Y  L +     +  +CDV D +G+    YRLN EKVL WL  KV + K+ L+ L+
Sbjct:   77 SKDGNKVGQLLSLQHPKSGNATCYICV-DGALQELHWFKQS---YGSWFLGDYVCEDSRLYTATPVDPVFVLLPIFEEARMKKKDDLGKFRQLDEITYVVGYPGYQHLSSVAENCMQVVCDVKD-IGNTK-FYRLNDEKVLKWLCFKVIQLKKTLLTLD 229          
BLAST of NO09G01260 vs. NCBI_GenBank
Match: XP_009624241.1 (PREDICTED: ribonuclease H2 subunit B [Nicotiana tomentosiformis])

HSP 1 Score: 87.8 bits (216), Expect = 7.400e-14
Identity = 59/173 (34.10%), Postives = 86/173 (49.71%), Query Frame = 0
Query:   16 EAVVASKFISTALASSSSMHLGQVLALAHPRGGSPTQYLLTPSGHFCELQSFRPSGSKYGSWFIEQKVVSDGLLYVASPMDPKLLLLPVLEK------HGAAHFSPLEQILAAEADGLYMPLRTCQRLELHRMCDVNDQLGDDMILYRLNPEKVLTWLVSKVERTKRALVMLE 183
            E +  ++ +     S     +GQ+L+L HP+ G+ T Y+    G   EL  F+ S   YGSWF+   V  DG LY A+P+DP  +LLP+ E+           F  L++I        Y  L +     +  +CDV D +G     YRLN EKVL WL  KV + K+ L+ L+
Sbjct:   60 EGIDEARVLIAPEPSKDGNKVGQLLSLQHPKSGNATCYVCV-DGSLQELHWFKQS---YGSWFLGDYVCEDGRLYTATPVDPVFVLLPIFEEARMKKNDDQGKFRQLDEITYVVGYPGYQHLSSVAENCMQVVCDVKD-IGKTQ-FYRLNDEKVLKWLCFKVIQLKKTLLTLD 226          
BLAST of NO09G01260 vs. NCBI_GenBank
Match: XP_016481060.1 (PREDICTED: ribonuclease H2 subunit B-like [Nicotiana tabacum])

HSP 1 Score: 87.8 bits (216), Expect = 7.400e-14
Identity = 59/173 (34.10%), Postives = 86/173 (49.71%), Query Frame = 0
Query:   16 EAVVASKFISTALASSSSMHLGQVLALAHPRGGSPTQYLLTPSGHFCELQSFRPSGSKYGSWFIEQKVVSDGLLYVASPMDPKLLLLPVLEK------HGAAHFSPLEQILAAEADGLYMPLRTCQRLELHRMCDVNDQLGDDMILYRLNPEKVLTWLVSKVERTKRALVMLE 183
            E +  ++ +     S     +GQ+L+L HP+ G+ T Y+    G   EL  F+ S   YGSWF+   V  DG LY A+P+DP  +LLP+ E+           F  L++I        Y  L +     +  +CDV D +G     YRLN EKVL WL  KV + K+ L+ L+
Sbjct:   60 EGIDEARILIAPEPSKDGNTVGQLLSLQHPKSGNATCYVCV-DGSLQELHWFKQS---YGSWFLGDYVCEDGRLYTATPVDPVFVLLPIFEEARMKKNDDQGKFRQLDEITYVVGYPGYQHLSSVAENCMQVVCDVKD-IGKTQ-FYRLNDEKVLKWLCFKVIQLKKTLLTLD 226          
BLAST of NO09G01260 vs. NCBI_GenBank
Match: XP_017239771.1 (PREDICTED: ribonuclease H2 subunit B [Daucus carota subsp. sativus])

HSP 1 Score: 87.8 bits (216), Expect = 7.400e-14
Identity = 53/152 (34.87%), Postives = 81/152 (53.29%), Query Frame = 0
Query:   37 GQVLALAHPRGGSPTQYLLTPSGHFCELQSFRPSGSKYGSWFIEQKVVSDGLLYVASPMDPKLLLLPVLEK------HGAAHFSPLEQILAAEADGLYMPLRTCQRLELHRMCDVNDQLGDDMILYRLNPEKVLTWLVSKVERTKRALVMLE 183
            G +L+L HP+ G+PT YLLT  G+  E+  F+   + YGSWF+   V  DG LY A+P+DP  +LLP+ ++           F  L++I+  +    Y  L +     +  +CD   ++G     +RLN  KVL WL  KV + K+ L  L+
Sbjct:   26 GCLLSLCHPKTGNPTSYLLT-DGNLQEIHWFK---TAYGSWFLGDYVCEDGRLYAATPIDPVFILLPIFDEARMKKGEDQGKFRQLDEIIFIQGYPGYQHLLSIADKSMQVVCDFK-EVGSTK-FFRLNDSKVLAWLHFKVHQLKQTLPTLD 171          
BLAST of NO09G01260 vs. NCBI_GenBank
Match: XP_022010854.1 (ribonuclease H2 subunit B [Helianthus annuus] >OTF94136.1 hypothetical protein HannXRQ_Chr15g0468831 [Helianthus annuus])

HSP 1 Score: 87.0 bits (214), Expect = 1.300e-13
Identity = 54/165 (32.73%), Postives = 89/165 (53.94%), Query Frame = 0
Query:   24 ISTALASSSSMHLGQVLALAHPRGGSPTQYLLTPSGHFCELQSFRPSGSKYGSWFIEQKVVSDGLLYVASPMDPKLLLLPVLEK------HGAAHFSPLEQILAAEADGLYMPLRTCQRLELHRMCDVNDQLGDDMILYRLNPEKVLTWLVSKVERTKRALVMLE 183
            ++++ +S++    G++L L HP+ G  T YLL  +G   EL  F+ S   YGSWF+   +  DG LY A+P+DP  +LLP+ ++      +    F  L++I+       Y  L T     +  +CD   ++G     +RLN  KVL W++ KV++ K+ LV L+
Sbjct:   14 VASSDSSATGDDTGRLLQLRHPKTGDSTSYLLI-NGDLQELNWFKQS---YGSWFMGDYICEDGGLYTATPVDPVFILLPMFDQARMKNGNDPGKFRQLDEIIYIHDYPGYRCLSTIAESSMQIVCDFK-EIGSTK-FFRLNDSKVLAWMLCKVQQLKQTLVKLD 172          
The following BLAST results are available for this feature:
BLAST of NO09G01260 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
PIN03701.13.300e-1434.34hypothetical protein CDL12_23776 [Handroanthus imp... [more]
XP_019170802.14.300e-1435.29PREDICTED: ribonuclease H2 subunit B [Ipomoea nil]... [more]
XP_009764828.15.600e-1436.48PREDICTED: ribonuclease H2 subunit B isoform X1 [N... [more]
XP_009764829.15.600e-1436.48PREDICTED: ribonuclease H2 subunit B isoform X2 [N... [more]
KZN09527.15.600e-1435.10hypothetical protein DCAR_002183 [Daucus carota su... [more]
XP_016489494.15.600e-1436.48PREDICTED: ribonuclease H2 subunit B-like isoform ... [more]
XP_009624241.17.400e-1434.10PREDICTED: ribonuclease H2 subunit B [Nicotiana to... [more]
XP_016481060.17.400e-1434.10PREDICTED: ribonuclease H2 subunit B-like [Nicotia... [more]
XP_017239771.17.400e-1434.87PREDICTED: ribonuclease H2 subunit B [Daucus carot... [more]
XP_022010854.11.300e-1332.73ribonuclease H2 subunit B [Helianthus annuus] >OTF... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL119nonsL119Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G01260.1NO09G01260.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|670791gene_4429Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G01260.1NO09G01260.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G01260 ID=NO09G01260|Name=NO09G01260|organism=Nannochloropsis oceanica|type=gene|length=1270bp
ATGGCGACGTCTCAAAGCACGCGGACCCGGCTTTTGTGCGTACCCGAGGC
AGTGGTGGCGTCCAAATTCATTTCCACGGCCCTTGCGTCGTCGTCTTCAA
TGCACTTGGGTCAGGTCCTAGCCTTGGCACACCCACGCGGAGGCAGCCCA
ACGCAATACTTGCTGACTCCGTCGGGCCACTTCTGCGAGCTTCAGTCGTT
TCGACCCTCGGGGAGCAAATATGGGAGCTGGTTCATTGAGCAAAAAGTGG
TCTCAGACGGCCTCCTATACGTGGCTTCCCCTATGGACCCCAAACTCCTC
TTGCTGCCCGTCCTGGAAAAGCACGGGGCCGCCCACTTCTCGCCCTTAGA
GCAGATTTTGGCCGCGGAGGCGGACGGGCTTTACATGCCTTTGCGGACAT
GCCAACGCTTGGAGTTGCATAGAATGTGCGATGTGAATGACCAATTAGGC
GACGACATGATTCTCTACCGCCTGAATCCTGAGAAGGTCTTGACATGGCT
TGTCAGCAAGGTGGAACGGACAAAGCGCGCGCTGGTGATGCTTGAATCTG
CAAGAGAAGGGCAGAATAATGGGATTGGCATGGGGTTTGCTGCGGGTTTT
ACCATCCAGACGATGGATAACAGCAGTACGAGTGTGGGGGGCACGGAGGA
CAATGGGGAGAAAACAAGAGCAGCTGCTACAGCACGAGgtacgtcatttg
cgctgacgttcgagaaaaagcctgaaggtgcaaataaatagaccttgcgc
tccaaaatatctctcatctccaatgcccatacttagcccccgtgtctgtc
gtgctgaatcgagaagagacgcaattcaaaaatctagaagtgaccacaaa
ccacttacaccttcccctctctttatctgtatagAGGCTACACGAGAAGA
AATGCGCACCGCTCTCGAGCTTGTCTGCGACTATTTGACAGACGCTTGGG
CAACCAAACTCCAAACCCACTGCGGATTCAGCGAGGAGGAAATGAAACAC
GCAGCCGGCAGCCTAAAACGTTCTGTCTGGGAAGGTGAAGCTGACGCAGA
GCAAGACACGGCCATGGAATTGACGCAGGGAAAGAGGTTGAAGGCTGTAG
AAGGGGTAGGGGGAGGAGCGGTTGCACGTGGTGGTGGTGGTGGAGGAGTA
GGGGGAGGGAGGTGCCAAAAAATGGCTGCGATGGGCCCGAGCATTGCACA
AAAGAAGCTGGCCAAGACGAATTTAAAGGGTGTCAAGTCAATTTCCTCCT
TCTTTGATAAGAGGTCGTGA
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protein sequence of NO09G01260.1

>NO09G01260.1-protein ID=NO09G01260.1-protein|Name=NO09G01260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=358bp
MATSQSTRTRLLCVPEAVVASKFISTALASSSSMHLGQVLALAHPRGGSP
TQYLLTPSGHFCELQSFRPSGSKYGSWFIEQKVVSDGLLYVASPMDPKLL
LLPVLEKHGAAHFSPLEQILAAEADGLYMPLRTCQRLELHRMCDVNDQLG
DDMILYRLNPEKVLTWLVSKVERTKRALVMLESAREGQNNGIGMGFAAGF
TIQTMDNSSTSVGGTEDNGEKTRAAATAREATREEMRTALELVCDYLTDA
WATKLQTHCGFSEEEMKHAAGSLKRSVWEGEADAEQDTAMELTQGKRLKA
VEGVGGGAVARGGGGGGVGGGRCQKMAAMGPSIAQKKLAKTNLKGVKSIS
SFFDKRS*
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Synonyms
Publications