NO09G01250, NO09G01250 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO09G01250 vs. NCBI_GenBank
Match: KUF96616.1 (28S ribosomal protein S34 [Phytophthora nicotianae]) HSP 1 Score: 65.1 bits (157), Expect = 1.500e-7 Identity = 33/80 (41.25%), Postives = 49/80 (61.25%), Query Frame = 0 Query: 7 QSLFQVVNGLRHYGVGARLTRSIW--HGEPGTYWDVKRVALKEGDPNHGKAWGVFHWKGVPKGGEQKIRGPLKKQWTIVE 85 ++ FQV+ R YGVG R+TRSIW + EP +YW+V R+ D HGK +G F ++G +++ G LKK W++ E Sbjct: 9 KNAFQVLTPTREYGVGKRVTRSIWAKYAEP-SYWEVVRIR-PSPDLKHGKVFGRFTFRGKTDPQVKRMNGVLKKDWSLYE 86
BLAST of NO09G01250 vs. NCBI_GenBank
Match: XP_005852093.1 (hypothetical protein CHLNCDRAFT_133133 [Chlorella variabilis] >EFN59991.1 hypothetical protein CHLNCDRAFT_133133 [Chlorella variabilis]) HSP 1 Score: 64.7 bits (156), Expect = 1.900e-7 Identity = 28/80 (35.00%), Postives = 49/80 (61.25%), Query Frame = 0 Query: 7 QSLFQVVNGLRHYGVGARLTRSIWHGEPGTYWDVKRVALKEGDPNHGKAWGVFHWKGVPK--GGEQKIRGPLKKQWTIVE 85 ++ F++++ + +G+G++L+R+ W + YW + RV L D HGKAWGV W+G P+ ++ GPLK+ W V+ Sbjct: 10 KNAFEILSRMPQHGLGSKLSRTSWTDD--CYWTIARVKLSP-DGKHGKAWGVLTWRGEPQRPNAPTQMAGPLKRVWRAVQ 86
BLAST of NO09G01250 vs. NCBI_GenBank
Match: CCA20099.1 (hypothetical protein TRIADDRAFT_60507 [Albugo laibachii Nc14]) HSP 1 Score: 64.7 bits (156), Expect = 1.900e-7 Identity = 33/75 (44.00%), Postives = 48/75 (64.00%), Query Frame = 0 Query: 8 SLFQVVNGLRHYGVGARLTRSIWH--GEPGTYWDVKRVALKEGDPNHGKAWGVFHWKGVPKGGEQKIRGPLKKQW 81 +LFQ++ R+YGVG R++RSIW+ EP YW++ R+ D HGKA+G F ++G E++I PLKK W Sbjct: 3 NLFQIICPKRNYGVGQRVSRSIWNRFTEP-CYWEITRIR-PAPDLKHGKAFGRFTFRGKTDPKEKRINNPLKKDW 75
BLAST of NO09G01250 vs. NCBI_GenBank
Match: ORY04647.1 (hypothetical protein K493DRAFT_311341 [Basidiobolus meristosporus CBS 931.73]) HSP 1 Score: 64.7 bits (156), Expect = 1.900e-7 Identity = 36/77 (46.75%), Postives = 50/77 (64.94%), Query Frame = 0 Query: 7 QSLFQVVNGLRHYGVGARLTRSIW--HGEPGTYWDVKRVALKEGDPNHGKAWGVFHWKGVPKGGE-QKIRGPLKKQW 81 +SLFQ +N L+ GVG ++T + W G +Y+ V +V L+ D HGKAWGV +WKG P+ G+ Q+IRG LK W Sbjct: 25 KSLFQHLNLLKDNGVGTKVTITKWLDKGYKDSYYLVTKVNLRT-DLQHGKAWGVKYWKGRPETGKVQEIRGGLKFNW 100
BLAST of NO09G01250 vs. NCBI_GenBank
Match: XP_008880788.1 (hypothetical protein H310_14668 [Aphanomyces invadans] >ETV90574.1 hypothetical protein H310_14668 [Aphanomyces invadans]) HSP 1 Score: 64.3 bits (155), Expect = 2.500e-7 Identity = 31/81 (38.27%), Postives = 50/81 (61.73%), Query Frame = 0 Query: 8 SLFQVVNGLRHYGVGARLTRSIW---HGEPGTYWDVKRVALKEGDPN--HGKAWGVFHWKGVPKGGEQKIRGPLKKQWTIV 84 +LF+ + G R++GVG ++TR+IW PG+ + E P+ HGKA+G+ ++GV +G +++ GPLKK W IV Sbjct: 11 NLFKAICGKRNFGVGQKVTRAIWDRFEETPGSTTSFIEITRVEPSPDLAHGKAYGIKTFRGVSEGKVRRVDGPLKKDWRIV 91
BLAST of NO09G01250 vs. NCBI_GenBank
Match: OAE33261.1 (hypothetical protein AXG93_1200s1230 [Marchantia polymorpha subsp. ruderalis] >PTQ49840.1 hypothetical protein MARPO_0002s0283 [Marchantia polymorpha]) HSP 1 Score: 64.3 bits (155), Expect = 2.500e-7 Identity = 33/83 (39.76%), Postives = 50/83 (60.24%), Query Frame = 0 Query: 9 LFQVVNGLRHYGVGARLTRSIWHGEPGTYWDVKRVALKEGDPNHGKAWGVFHWKGVPKGG-EQKIRGPLKKQWTIVEGTGGNG 91 L +V+ L ++GVGA++ + W EP T++ + R+ L + D HG AWG+FH G PK G E+KI G K+ W ++G G Sbjct: 36 LVEVLQFLPNWGVGAKVCKGHW--EPDTFYQLTRIQLGK-DARHGAAWGIFHASGAPKSGVEEKIGGVNKRCWRYLKGEQKGG 115
BLAST of NO09G01250 vs. NCBI_GenBank
Match: KIO19880.1 (hypothetical protein M407DRAFT_246026 [Tulasnella calospora MUT 4182]) HSP 1 Score: 63.9 bits (154), Expect = 3.300e-7 Identity = 34/76 (44.74%), Postives = 46/76 (60.53%), Query Frame = 0 Query: 8 SLFQVVNGLRHYGVGARLTRSIWH--GEPGTYWDVKRVALKEGDPNHGKAWGVFHWKGVPKGGE-QKIRGPLKKQW 81 +L+QV++ L GVGAR+T++ W G +YW++ RV LK + NHGKAWG WKG P +IR LK W Sbjct: 30 NLYQVLSSLPKDGVGARITQARWEKKGIQDSYWEITRVRLK-AEGNHGKAWGKLVWKGKPVNEHTTRIRQGLKYLW 104
BLAST of NO09G01250 vs. NCBI_GenBank
Match: XP_008915200.1 (hypothetical protein PPTG_18715 [Phytophthora parasitica INRA-310] >XP_008915201.1 hypothetical protein, variant [Phytophthora parasitica INRA-310] >ETI30944.1 hypothetical protein F443_22007 [Phytophthora parasitica P1569] >ETK71331.1 hypothetical protein L915_21412 [Phytophthora parasitica] >ETL24776.1 hypothetical protein L916_21278 [Phytophthora parasitica] >ETL77997.1 hypothetical protein L917_21127 [Phytophthora parasitica] >ETM31255.1 hypothetical protein L914_21148 [Phytophthora parasitica] >ETM99462.1 hypothetical protein PPTG_18715 [Phytophthora parasitica INRA-310] >ETM99463.1 hypothetical protein, variant [Phytophthora parasitica INRA-310] >ETO59653.1 hypothetical protein F444_22026 [Phytophthora parasitica P1976] >ETO59654.1 hypothetical protein, variant [Phytophthora parasitica P1976] >ETP00747.1 hypothetical protein F441_21898 [Phytophthora parasitica CJ01A1] >ETP28906.1 hypothetical protein F442_21871 [Phytophthora parasitica P10297]) HSP 1 Score: 63.5 bits (153), Expect = 4.300e-7 Identity = 32/80 (40.00%), Postives = 48/80 (60.00%), Query Frame = 0 Query: 7 QSLFQVVNGLRHYGVGARLTRSIW--HGEPGTYWDVKRVALKEGDPNHGKAWGVFHWKGVPKGGEQKIRGPLKKQWTIVE 85 ++ FQV+ R YGVG R+TR IW + EP +YW+V R+ D HGK +G F ++G +++ G LKK W++ E Sbjct: 9 KNAFQVLTPTREYGVGKRVTRGIWAKYAEP-SYWEVVRIR-PSPDLKHGKVFGRFTFRGKTDPQVKRMNGVLKKDWSLYE 86
BLAST of NO09G01250 vs. NCBI_GenBank
Match: CEO99440.1 (hypothetical protein PBRA_001346 [Plasmodiophora brassicae]) HSP 1 Score: 63.5 bits (153), Expect = 4.300e-7 Identity = 30/80 (37.50%), Postives = 47/80 (58.75%), Query Frame = 0 Query: 6 GQSLFQVVNGLRHYGVGARLTRSIWHGEP-GTYWDVKRVALKEGDPNHGKAWGVFHWKGVPKGGEQKIRGPLKKQWTIVE 85 G + F+V + L G G LTRS+W P +YW V RV + +H KAWG+ W+G P+ +++R K+QW+++E Sbjct: 49 GFTFFEVADKLEKGGKGMHLTRSLWARYPEPSYWTVTRVKFSK-HGHHPKAWGLLTWRGRPEERPREVRCTHKRQWSVLE 127
BLAST of NO09G01250 vs. NCBI_GenBank
Match: EFJ07382.1 (hypothetical protein SELMODRAFT_448496 [Selaginella moellendorffii]) HSP 1 Score: 62.8 bits (151), Expect = 7.300e-7 Identity = 28/80 (35.00%), Postives = 47/80 (58.75%), Query Frame = 0 Query: 5 PGQSLFQVVNGLRHYGVGARLTRSIWHGEPGTYWDVKRVALKEGDPNHGKAWGVFHWKGVPKGGEQKIRGPLKKQWTIVE 85 P ++LF ++ GL +G+G + + W + Y+ + R+ L + NHGKAWG+FH GV K G ++ G K+ W ++E Sbjct: 65 PRKNLFDILAGLPDWGMGMKFQKKTWRRD--RYFVLTRINLYK-SLNHGKAWGMFHENGVLKTGVMRMSGSNKRNWRVIE 141 The following BLAST results are available for this feature:
BLAST of NO09G01250 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO09G01250 ID=NO09G01250|Name=NO09G01250|organism=Nannochloropsis oceanica|type=gene|length=309bpback to top protein sequence of NO09G01250.1 >NO09G01250.1-protein ID=NO09G01250.1-protein|Name=NO09G01250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=103bpback to top Synonyms
Publications
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