NO09G01250, NO09G01250 (gene) Nannochloropsis oceanica

Overview
NameNO09G01250
Unique NameNO09G01250
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length309
Alignment locationchr9:406506..406814 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:406506..406814 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
Vocabulary: INTERPRO
TermDefinition
IPR032053MRP-S34
Homology
BLAST of NO09G01250 vs. NCBI_GenBank
Match: KUF96616.1 (28S ribosomal protein S34 [Phytophthora nicotianae])

HSP 1 Score: 65.1 bits (157), Expect = 1.500e-7
Identity = 33/80 (41.25%), Postives = 49/80 (61.25%), Query Frame = 0
Query:    7 QSLFQVVNGLRHYGVGARLTRSIW--HGEPGTYWDVKRVALKEGDPNHGKAWGVFHWKGVPKGGEQKIRGPLKKQWTIVE 85
            ++ FQV+   R YGVG R+TRSIW  + EP +YW+V R+     D  HGK +G F ++G      +++ G LKK W++ E
Sbjct:    9 KNAFQVLTPTREYGVGKRVTRSIWAKYAEP-SYWEVVRIR-PSPDLKHGKVFGRFTFRGKTDPQVKRMNGVLKKDWSLYE 86          
BLAST of NO09G01250 vs. NCBI_GenBank
Match: XP_005852093.1 (hypothetical protein CHLNCDRAFT_133133 [Chlorella variabilis] >EFN59991.1 hypothetical protein CHLNCDRAFT_133133 [Chlorella variabilis])

HSP 1 Score: 64.7 bits (156), Expect = 1.900e-7
Identity = 28/80 (35.00%), Postives = 49/80 (61.25%), Query Frame = 0
Query:    7 QSLFQVVNGLRHYGVGARLTRSIWHGEPGTYWDVKRVALKEGDPNHGKAWGVFHWKGVPK--GGEQKIRGPLKKQWTIVE 85
            ++ F++++ +  +G+G++L+R+ W  +   YW + RV L   D  HGKAWGV  W+G P+      ++ GPLK+ W  V+
Sbjct:   10 KNAFEILSRMPQHGLGSKLSRTSWTDD--CYWTIARVKLSP-DGKHGKAWGVLTWRGEPQRPNAPTQMAGPLKRVWRAVQ 86          
BLAST of NO09G01250 vs. NCBI_GenBank
Match: CCA20099.1 (hypothetical protein TRIADDRAFT_60507 [Albugo laibachii Nc14])

HSP 1 Score: 64.7 bits (156), Expect = 1.900e-7
Identity = 33/75 (44.00%), Postives = 48/75 (64.00%), Query Frame = 0
Query:    8 SLFQVVNGLRHYGVGARLTRSIWH--GEPGTYWDVKRVALKEGDPNHGKAWGVFHWKGVPKGGEQKIRGPLKKQW 81
            +LFQ++   R+YGVG R++RSIW+   EP  YW++ R+     D  HGKA+G F ++G     E++I  PLKK W
Sbjct:    3 NLFQIICPKRNYGVGQRVSRSIWNRFTEP-CYWEITRIR-PAPDLKHGKAFGRFTFRGKTDPKEKRINNPLKKDW 75          
BLAST of NO09G01250 vs. NCBI_GenBank
Match: ORY04647.1 (hypothetical protein K493DRAFT_311341 [Basidiobolus meristosporus CBS 931.73])

HSP 1 Score: 64.7 bits (156), Expect = 1.900e-7
Identity = 36/77 (46.75%), Postives = 50/77 (64.94%), Query Frame = 0
Query:    7 QSLFQVVNGLRHYGVGARLTRSIW--HGEPGTYWDVKRVALKEGDPNHGKAWGVFHWKGVPKGGE-QKIRGPLKKQW 81
            +SLFQ +N L+  GVG ++T + W   G   +Y+ V +V L+  D  HGKAWGV +WKG P+ G+ Q+IRG LK  W
Sbjct:   25 KSLFQHLNLLKDNGVGTKVTITKWLDKGYKDSYYLVTKVNLRT-DLQHGKAWGVKYWKGRPETGKVQEIRGGLKFNW 100          
BLAST of NO09G01250 vs. NCBI_GenBank
Match: XP_008880788.1 (hypothetical protein H310_14668 [Aphanomyces invadans] >ETV90574.1 hypothetical protein H310_14668 [Aphanomyces invadans])

HSP 1 Score: 64.3 bits (155), Expect = 2.500e-7
Identity = 31/81 (38.27%), Postives = 50/81 (61.73%), Query Frame = 0
Query:    8 SLFQVVNGLRHYGVGARLTRSIW---HGEPGTYWDVKRVALKEGDPN--HGKAWGVFHWKGVPKGGEQKIRGPLKKQWTIV 84
            +LF+ + G R++GVG ++TR+IW      PG+      +   E  P+  HGKA+G+  ++GV +G  +++ GPLKK W IV
Sbjct:   11 NLFKAICGKRNFGVGQKVTRAIWDRFEETPGSTTSFIEITRVEPSPDLAHGKAYGIKTFRGVSEGKVRRVDGPLKKDWRIV 91          
BLAST of NO09G01250 vs. NCBI_GenBank
Match: OAE33261.1 (hypothetical protein AXG93_1200s1230 [Marchantia polymorpha subsp. ruderalis] >PTQ49840.1 hypothetical protein MARPO_0002s0283 [Marchantia polymorpha])

HSP 1 Score: 64.3 bits (155), Expect = 2.500e-7
Identity = 33/83 (39.76%), Postives = 50/83 (60.24%), Query Frame = 0
Query:    9 LFQVVNGLRHYGVGARLTRSIWHGEPGTYWDVKRVALKEGDPNHGKAWGVFHWKGVPKGG-EQKIRGPLKKQWTIVEGTGGNG 91
            L +V+  L ++GVGA++ +  W  EP T++ + R+ L + D  HG AWG+FH  G PK G E+KI G  K+ W  ++G    G
Sbjct:   36 LVEVLQFLPNWGVGAKVCKGHW--EPDTFYQLTRIQLGK-DARHGAAWGIFHASGAPKSGVEEKIGGVNKRCWRYLKGEQKGG 115          
BLAST of NO09G01250 vs. NCBI_GenBank
Match: KIO19880.1 (hypothetical protein M407DRAFT_246026 [Tulasnella calospora MUT 4182])

HSP 1 Score: 63.9 bits (154), Expect = 3.300e-7
Identity = 34/76 (44.74%), Postives = 46/76 (60.53%), Query Frame = 0
Query:    8 SLFQVVNGLRHYGVGARLTRSIWH--GEPGTYWDVKRVALKEGDPNHGKAWGVFHWKGVPKGGE-QKIRGPLKKQW 81
            +L+QV++ L   GVGAR+T++ W   G   +YW++ RV LK  + NHGKAWG   WKG P      +IR  LK  W
Sbjct:   30 NLYQVLSSLPKDGVGARITQARWEKKGIQDSYWEITRVRLK-AEGNHGKAWGKLVWKGKPVNEHTTRIRQGLKYLW 104          
BLAST of NO09G01250 vs. NCBI_GenBank
Match: XP_008915200.1 (hypothetical protein PPTG_18715 [Phytophthora parasitica INRA-310] >XP_008915201.1 hypothetical protein, variant [Phytophthora parasitica INRA-310] >ETI30944.1 hypothetical protein F443_22007 [Phytophthora parasitica P1569] >ETK71331.1 hypothetical protein L915_21412 [Phytophthora parasitica] >ETL24776.1 hypothetical protein L916_21278 [Phytophthora parasitica] >ETL77997.1 hypothetical protein L917_21127 [Phytophthora parasitica] >ETM31255.1 hypothetical protein L914_21148 [Phytophthora parasitica] >ETM99462.1 hypothetical protein PPTG_18715 [Phytophthora parasitica INRA-310] >ETM99463.1 hypothetical protein, variant [Phytophthora parasitica INRA-310] >ETO59653.1 hypothetical protein F444_22026 [Phytophthora parasitica P1976] >ETO59654.1 hypothetical protein, variant [Phytophthora parasitica P1976] >ETP00747.1 hypothetical protein F441_21898 [Phytophthora parasitica CJ01A1] >ETP28906.1 hypothetical protein F442_21871 [Phytophthora parasitica P10297])

HSP 1 Score: 63.5 bits (153), Expect = 4.300e-7
Identity = 32/80 (40.00%), Postives = 48/80 (60.00%), Query Frame = 0
Query:    7 QSLFQVVNGLRHYGVGARLTRSIW--HGEPGTYWDVKRVALKEGDPNHGKAWGVFHWKGVPKGGEQKIRGPLKKQWTIVE 85
            ++ FQV+   R YGVG R+TR IW  + EP +YW+V R+     D  HGK +G F ++G      +++ G LKK W++ E
Sbjct:    9 KNAFQVLTPTREYGVGKRVTRGIWAKYAEP-SYWEVVRIR-PSPDLKHGKVFGRFTFRGKTDPQVKRMNGVLKKDWSLYE 86          
BLAST of NO09G01250 vs. NCBI_GenBank
Match: CEO99440.1 (hypothetical protein PBRA_001346 [Plasmodiophora brassicae])

HSP 1 Score: 63.5 bits (153), Expect = 4.300e-7
Identity = 30/80 (37.50%), Postives = 47/80 (58.75%), Query Frame = 0
Query:    6 GQSLFQVVNGLRHYGVGARLTRSIWHGEP-GTYWDVKRVALKEGDPNHGKAWGVFHWKGVPKGGEQKIRGPLKKQWTIVE 85
            G + F+V + L   G G  LTRS+W   P  +YW V RV   +   +H KAWG+  W+G P+   +++R   K+QW+++E
Sbjct:   49 GFTFFEVADKLEKGGKGMHLTRSLWARYPEPSYWTVTRVKFSK-HGHHPKAWGLLTWRGRPEERPREVRCTHKRQWSVLE 127          
BLAST of NO09G01250 vs. NCBI_GenBank
Match: EFJ07382.1 (hypothetical protein SELMODRAFT_448496 [Selaginella moellendorffii])

HSP 1 Score: 62.8 bits (151), Expect = 7.300e-7
Identity = 28/80 (35.00%), Postives = 47/80 (58.75%), Query Frame = 0
Query:    5 PGQSLFQVVNGLRHYGVGARLTRSIWHGEPGTYWDVKRVALKEGDPNHGKAWGVFHWKGVPKGGEQKIRGPLKKQWTIVE 85
            P ++LF ++ GL  +G+G +  +  W  +   Y+ + R+ L +   NHGKAWG+FH  GV K G  ++ G  K+ W ++E
Sbjct:   65 PRKNLFDILAGLPDWGMGMKFQKKTWRRD--RYFVLTRINLYK-SLNHGKAWGMFHENGVLKTGVMRMSGSNKRNWRVIE 141          
The following BLAST results are available for this feature:
BLAST of NO09G01250 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
KUF96616.11.500e-741.2528S ribosomal protein S34 [Phytophthora nicotianae... [more]
XP_005852093.11.900e-735.00hypothetical protein CHLNCDRAFT_133133 [Chlorella ... [more]
CCA20099.11.900e-744.00hypothetical protein TRIADDRAFT_60507 [Albugo laib... [more]
ORY04647.11.900e-746.75hypothetical protein K493DRAFT_311341 [Basidiobolu... [more]
XP_008880788.12.500e-738.27hypothetical protein H310_14668 [Aphanomyces invad... [more]
OAE33261.12.500e-739.76hypothetical protein AXG93_1200s1230 [Marchantia p... [more]
KIO19880.13.300e-744.74hypothetical protein M407DRAFT_246026 [Tulasnella ... [more]
XP_008915200.14.300e-740.00hypothetical protein PPTG_18715 [Phytophthora para... [more]
CEO99440.14.300e-737.50hypothetical protein PBRA_001346 [Plasmodiophora b... [more]
EFJ07382.17.300e-735.00hypothetical protein SELMODRAFT_448496 [Selaginell... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL119nonsL119Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010613NSK010613Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G01250.1NO09G01250.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589078gene_4430Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G01250.1NO09G01250.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G01250 ID=NO09G01250|Name=NO09G01250|organism=Nannochloropsis oceanica|type=gene|length=309bp
ATGCCGCCGCCCCCCGGCCAGAGCCTCTTCCAAGTCGTCAACGGCCTGCG
GCATTATGGTGTCGGGGCCCGATTAACCCGCTCGATATGGCACGGCGAGC
CGGGGACGTATTGGGATGTCAAGCGAGTCGCCTTGAAGGAGGGGGACCCA
AACCACGGCAAGGCATGGGGTGTCTTTCATTGGAAAGGTGTACCGAAAGG
CGGAGAGCAGAAGATTCGCGGGCCCTTGAAGAAACAGTGGACGATTGTGG
AGGGAACTGGAGGGAATGGTGGTGGGGCTGAGGGTGGGAGCTCTGCCACG
CTACTATGA
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protein sequence of NO09G01250.1

>NO09G01250.1-protein ID=NO09G01250.1-protein|Name=NO09G01250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=103bp
MPPPPGQSLFQVVNGLRHYGVGARLTRSIWHGEPGTYWDVKRVALKEGDP
NHGKAWGVFHWKGVPKGGEQKIRGPLKKQWTIVEGTGGNGGGAEGGSSAT
LL*
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Synonyms
Publications