NO09G01140, NO09G01140 (gene) Nannochloropsis oceanica

Overview
NameNO09G01140
Unique NameNO09G01140
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1443
Alignment locationchr9:368464..369906 -

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:368464..369906 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO09G01140 vs. NCBI_GenBank
Match: CBN78451.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 114.8 bits (286), Expect = 2.000e-22
Identity = 65/132 (49.24%), Postives = 79/132 (59.85%), Query Frame = 0
Query:    1 MKTFCILLALVALFNFSNAFM-PKAPVHTARPVVARGRTMKMMEES-----TYWEGKAPPSVVLGPFLSKIPSGVLGPASLVALIVGSYCTHESNIFNTLTVDTIYPAYVLGSFLTPISWGLHVAAWIQKMN 127
            MK F  L  LV L   ++AF+ P A   +A       R    +  +     TYWEGKAPPS VLGP L+K PS  LG  SL A   G+YC HE+NI +T++ D I P YV G+ L PISWGLHVA+WIQK N
Sbjct:    1 MKLFAFL--LVVLIGAASAFVSPSAFKGSALAAPRATRATSKVSATPVMLDTYWEGKAPPSEVLGPALAKAPSAGLGVVSLAAFAAGTYCIHETNILHTVSPDNIQPLYVAGALLVPISWGLHVASWIQKQN 130          
BLAST of NO09G01140 vs. NCBI_GenBank
Match: XP_005707993.1 (hypothetical protein Gasu_14300 [Galdieria sulphuraria] >EME31473.1 hypothetical protein Gasu_14300 [Galdieria sulphuraria])

HSP 1 Score: 99.8 bits (247), Expect = 6.800e-18
Identity = 48/86 (55.81%), Postives = 59/86 (68.60%), Query Frame = 0
Query:   41 MMEESTYWEGKAPPSVVLGPFLSKIPSGVLGPASLVALIVGSYCTHESNIFNTLTVDTIYPAYVLGSFLTPISWGLHVAAWIQKMN 127
            ++ + T+W GK PPS VLG    K+PS     +S+V L+VGSYC +ESN+ + LTV TI P YVLGS L P SWGLHVA WIQ  N
Sbjct:   47 VVAKDTFWTGKVPPSTVLG-IGEKVPSAAYIISSVVCLLVGSYCVYESNLLSPLTVTTINPLYVLGSLLVPYSWGLHVAGWIQLKN 131          
BLAST of NO09G01140 vs. NCBI_GenBank
Match: OSX74017.1 (hypothetical protein BU14_0313s0002 [Porphyra umbilicalis])

HSP 1 Score: 95.1 bits (235), Expect = 1.700e-16
Identity = 51/105 (48.57%), Postives = 69/105 (65.71%), Query Frame = 0
Query:   24 APVHTARPVV--ARGRTMKMMEESTYWEGKAPPSVVLGPFLSKIPSGVLGPASLVALIVGSYCTHESNIFNTLTVDTIYPAYVLGSFLTPISWGLHVAAWIQKMN 127
            A +  +R  V  A  R+++M    TYWEGKAPPS VLG     +PSG+   AS+++L +GSY  ++SN+ + LT  T+   Y+L S L PISWGLHVA+WIQK N
Sbjct:   32 AAIRPSRATVTPAGARSLRM---DTYWEGKAPPSTVLG-LGKNVPSGLYLLASVLSLALGSYGVYKSNLASPLTPSTVEAQYILASLLAPISWGLHVASWIQKQN 132          
BLAST of NO09G01140 vs. NCBI_GenBank
Match: GAX20572.1 (hypothetical protein FisN_3Hh578 [Fistulifera solaris])

HSP 1 Score: 87.4 bits (215), Expect = 3.500e-14
Identity = 56/132 (42.42%), Postives = 74/132 (56.06%), Query Frame = 0
Query:    3 TFCILLALVALFNFSNAFMPKAPVHTARPVVARGRTMKM-MEESTYWEGKAPPSVVLGPFLSKIPSGVLGPASLVALIVGSYCTHESNI-------FNTLTVDTIYPAYVLGSFLTPISWGLHVAAWIQKMN 127
            +F I+  +VA+   S AF+P + V T          + M M E  YWEG+ PPS VLGP +SK+PSGVLG  SL  L   +Y   +S++       F   T    Y  YVLGSF  P++WG HVA+WIQ+ N
Sbjct:    5 SFVIVSLVVAM---SQAFVPASQVRTPATAFVNSSPLVMNMAEDMYWEGEYPPSKVLGPIMSKMPSGVLGVLSLFFLGACAYSVGQSSVLVQEPGAFENGTWVKWY--YVLGSFGGPLAWGTHVASWIQRKN 131          
BLAST of NO09G01140 vs. NCBI_GenBank
Match: GAX10366.1 (hypothetical protein FisN_3Lh578 [Fistulifera solaris])

HSP 1 Score: 84.7 bits (208), Expect = 2.200e-13
Identity = 55/133 (41.35%), Postives = 73/133 (54.89%), Query Frame = 0
Query:    3 TFCILLALVALFNFSNAFMPKAPVHTARPVVARGRT--MKMMEESTYWEGKAPPSVVLGPFLSKIPSGVLGPASLVALIVGSYCTHESNI-------FNTLTVDTIYPAYVLGSFLTPISWGLHVAAWIQKMN 127
            +F I   +VA+   S AF+P + V T         +  +  M E  YWEG+ PPS VLGP +SK+PSGVLG  SL  L   +Y   +S++       F   T    Y  YVLGSF  P++WG HVA+WIQ+ N
Sbjct:    5 SFVIASLVVAM---SQAFVPASQVRTPAAAFVNNNSPLVMNMAEDMYWEGEYPPSKVLGPIMSKMPSGVLGVLSLFFLGACAYSVGQSSVLVQEPGAFENGTWVKWY--YVLGSFGGPLAWGTHVASWIQRKN 132          
BLAST of NO09G01140 vs. NCBI_GenBank
Match: XP_002177048.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC51511.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 82.4 bits (202), Expect = 1.100e-12
Identity = 52/128 (40.62%), Postives = 73/128 (57.03%), Query Frame = 0
Query:    3 TFCILLALVALFNFSNAFMPKAPVHTARPVVARGRT--MKMMEESTYWEGKAPPSVVLGPFLSKIPSGVLGPASLVALIVGSYCTHESNIFNTL-----TVDTIYPAYVLGSFLTPISWGLHVAAWIQ 124
            +F ++  +VA+   + AF+P + + T    VA+  +     M E TYWEG+ PPS VLGP +SK+PSG+LG  SLV L   +Y    SN+   +         +   YV GSF  P++WG HVAAWIQ
Sbjct:    5 SFFVVALVVAM---AQAFVPASQIRTPATFVAKETSAFALNMAEDTYWEGEYPPSKVLGPIMSKMPSGLLGMLSLVFLGGCAYSIAMSNVLVQVPGAVENGSWVKWYYVAGSFGGPLAWGTHVAAWIQ 129          
BLAST of NO09G01140 vs. NCBI_GenBank
Match: XP_005827597.1 (hypothetical protein GUITHDRAFT_96294 [Guillardia theta CCMP2712] >EKX40617.1 hypothetical protein GUITHDRAFT_96294 [Guillardia theta CCMP2712])

HSP 1 Score: 80.5 bits (197), Expect = 4.200e-12
Identity = 54/130 (41.54%), Postives = 67/130 (51.54%), Query Frame = 0
Query:    5 CILLALVALFNFSNAFMPKAPVHTARPVVARGRTMKMME--------ESTYWEGKAPPSVVLGPFLSKIPSGVLGPASLVALIVGSYCTHESNIFNTLTVDTIYPAYVLGSFLTPISWGLHVAAWIQKMN 127
            C+LLALVA  +  +A  P  P+  +       RT+            + TYWE KAP S VLG     +PSG    AS+VA +VG +CT +      LT D   P Y+ GS   P SW LHVAAWIQK N
Sbjct:    7 CLLLALVASASAFSA--PTLPLRASGRAAVSQRTVMSYSPVPSPEGTKETYWETKAPSSEVLG-IGKNLPSGSFASASVVAALVGGFCTSQC---VPLTADP-NPLYIAGSLFLPYSWALHVAAWIQKNN 129          
BLAST of NO09G01140 vs. NCBI_GenBank
Match: EJK75236.1 (hypothetical protein THAOC_03046 [Thalassiosira oceanica])

HSP 1 Score: 80.1 bits (196), Expect = 5.500e-12
Identity = 48/134 (35.82%), Postives = 70/134 (52.24%), Query Frame = 0
Query:    3 TFCILLALVALFNFSNAFMPKAPVH-----TARPVVARGRTMKMMEESTYWEGKAPPSVVLGPFLSKIPSGVLGPASLVALIVGSYCTHESNIFNTL-----TVDTIYPAYVLGSFLTPISWGLHVAAWIQKMN 127
            T  +L A+VAL   S AF+P +        +A P +      ++  E   WEG+ PPS VLGP +SK PSG L   S++ L   +Y   +S I   +     + + + P Y+LG    P +WG HVA+WIQ+ N
Sbjct:    5 TLFLLAAIVAL---SQAFVPASQTSRVNQVSAAPRIETQSPTQLFAEDMTWEGEYPPSKVLGPIMSKAPSGTLAILSMMCLAACAYSCVQSGILLRVPGAVESGEWVKPEYILGGMAGPFAWGFHVASWIQRKN 135          
BLAST of NO09G01140 vs. NCBI_GenBank
Match: OEU06373.1 (hypothetical protein FRACYDRAFT_214349 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 79.7 bits (195), Expect = 7.200e-12
Identity = 60/144 (41.67%), Postives = 76/144 (52.78%), Query Frame = 0
Query:    3 TFCILLALVALFNFSNAFMPKAPVHTARPVVARGRT-------------MKMMEESTYWEGKAPPSVVLGPFLSKIPSGVLGPAS------LVALIVGSYCTH-ESNIFNTLTVDTIYPAYVLGSFLTPISWGLHVAAWIQKMN 127
            +F IL  +VA     +AF   AP+ T   VV R +T             ++  +  TYWEG+ PPS VLGP +SK+PSG+LG  S      LVA I GS     E   F   +    Y  YVLGSF  P++WG HVAAWIQ+ N
Sbjct:    5 SFVILSIVVAA---CSAF---APIATVNSVVTREQTFATTTPFFTALNAVEDYDSETYWEGEYPPSKVLGPIMSKMPSGMLGALSLVFLGALVASISGSAALQTEPGAFENGSWVKWY--YVLGSFGGPLAWGTHVAAWIQRKN 140          
BLAST of NO09G01140 vs. NCBI_GenBank
Match: XP_002286359.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED96000.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 72.4 bits (176), Expect = 1.200e-9
Identity = 50/135 (37.04%), Postives = 67/135 (49.63%), Query Frame = 0
Query:    7 LLALVALFNFSNAFMPKAPVHT-------ARPVVARGRTMKMMEESTYWEGKAPPSVVLGPFLSKIPSGVLGPASLVALIVGSYCTHESN--------IFNTLTVDTIYPAYVLGSFLTPISWGLHVAAWIQKMN 127
            L+ L A+   S+AF+P A   T       A  + A   T   M E   WEG+ PPS VLGP +SK+PSG+L   S+ +L V  Y   ++         I N   V   Y    LG    P++WG HVA+WIQ+ N
Sbjct:    6 LILLAAIVAISSAFVPAAQTATRVNQMTFAPKIEATESTALFMAEDMTWEGEYPPSKVLGPIMSKMPSGLLAIISMASLGVCVYSCVQTGFLLREPGAIENGSWVRWYYVVEGLGG---PLAWGTHVASWIQRKN 137          
The following BLAST results are available for this feature:
BLAST of NO09G01140 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 11
Match NameE-valueIdentityDescription
CBN78451.12.000e-2249.24conserved unknown protein [Ectocarpus siliculosus][more]
XP_005707993.16.800e-1855.81hypothetical protein Gasu_14300 [Galdieria sulphur... [more]
OSX74017.11.700e-1648.57hypothetical protein BU14_0313s0002 [Porphyra umbi... [more]
GAX20572.13.500e-1442.42hypothetical protein FisN_3Hh578 [Fistulifera sola... [more]
GAX10366.12.200e-1341.35hypothetical protein FisN_3Lh578 [Fistulifera sola... [more]
XP_002177048.11.100e-1240.63predicted protein [Phaeodactylum tricornutum CCAP ... [more]
XP_005827597.14.200e-1241.54hypothetical protein GUITHDRAFT_96294 [Guillardia ... [more]
EJK75236.15.500e-1235.82hypothetical protein THAOC_03046 [Thalassiosira oc... [more]
OEU06373.17.200e-1241.67hypothetical protein FRACYDRAFT_214349 [Fragilario... [more]
XP_002286359.11.200e-937.04predicted protein [Thalassiosira pseudonana CCMP13... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL119nonsL119Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010598NSK010598Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G01140.1NO09G01140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|639168gene_4441Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G01140.1NO09G01140.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G01140 ID=NO09G01140|Name=NO09G01140|organism=Nannochloropsis oceanica|type=gene|length=1443bp
GGGCGAAGCCCGATCCCACTTCCTTATCCTTTCCCTGACCCAGCGACAGC
GCCCGCTGGAGCTGTGGGGAAGACCAAGATGGGCTGGAGTTGATCCCAAG
CTTGACTGGGGAGTTCCCCATCATCTTTCTCATATCTAGCCCACACAACT
TGCTTTGCTGGCTCGTGTCTCCTCTTCATACCTTGTTCCCGCCAGCGCGA
CAACCATCCTAATCTTTCATCCTTTTCCTTCTGTACGTTTACACGTCCTA
CCGAACAGGTAGCATCCCCACAACACACTCACGTCTTTTCAAGAATGAAG
ACCTTTTGCATCCTTCTGGCCCTCGTCGCCCTGTTCAACTTTTCCAATGC
TTTCATGCCCAAGGCGCCCGTGCACACTGCCCGCCCCGTCGTCGCCCGCG
gtaagcaagcatttgaaggacatgcagattgagtgtctagtttagacatg
gagacggctcccatgccaagacaatgccttcctgaacactcactcaactc
tccccccgacagGCCGCACCATGAAGATGATGGAGGAGAGCACCTACTGG
GAAGGCAAGGCCCCCCCGTCCGTCGTGCTGGGCCCCTTTCTTTCCAAGAT
CCCCTCCGGTGTGCTTGGCCCTGCCTCCCTCGTCGCCCTCATTGTGgtac
gtttttttaaatatcagatttgcgaaaaaaaggaggggggagggagagag
cgcgcaagaaatagaggtagatgcatgaacggaaaagagaagaaaaccgg
aaggacgctaagctgcctctacatttgaatgctttcacgatttacagGGC
TCCTACTGCACGCACGAGTCCAACATCTTCAACACCCTCACCGTCGACAC
gtgagtccttcttttcctttgaatttcttgttgtctttttcctgtgattt
tcccgacttgtacatgcatgcgatggcccggccctccggaagtagcgcca
tgggagatgaacgaggagggtcgtataagtcctagtcatttaaaatctta
aaatgcccttcctcccttccttcctgcctgctttcttcttcttcgaggtc
tttctatgtcagataaacaaggcccgcctctatgcaccgccgttcacccc
cccccccccttcccccaccacagCATCTACCCCGCATACGTGCTTGGATC
TTTCCTGACGCCCATCTCCTGGGGCTTGCACGTTGCTGCCTGGATCCAGA
AGATGAATAAGGCTTAAATGAAACGCCATGGCGGCTTGAAGAGAGCAGGA
CAGGTGGATAGATTGAACGCGGATTGCCGCATTAGTTTTTGTTTTCTTTC
CTGCTGTCTCGCTTCTGGACGATACTGCCACTTCCACTGCGGCTCGATTT
AAGAAAAAGAGAAAAGGAAACAGAAAAAGAGACTCGCATACCCTTGATAA
AGCAAGAAAGGCAAAGAAAAAAGGAAGTTTGAAGATCATCCGA
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protein sequence of NO09G01140.1

>NO09G01140.1-protein ID=NO09G01140.1-protein|Name=NO09G01140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=129bp
MKTFCILLALVALFNFSNAFMPKAPVHTARPVVARGRTMKMMEESTYWEG
KAPPSVVLGPFLSKIPSGVLGPASLVALIVGSYCTHESNIFNTLTVDTIY
PAYVLGSFLTPISWGLHVAAWIQKMNKA*
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Synonyms
Publications