NO09G01140.1, NO09G01140.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G01140.1
Unique NameNO09G01140.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length907
Alignment locationchr9:368464..369906 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:368464..369906 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G01140.1 vs.
Match: CBN78451.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 114.8 bits (286), Expect = 2.000e-22
Identity = 65/132 (49.24%), Postives = 79/132 (59.85%), Query Frame = 0 
Query:    1 MKTFCILLALVALFNFSNAFM-PKAPVHTARPVVARGRTMKMMEES-----TYWEGKAPPSVVLGPFLSKIPSGVLGPASLVALIVGSYCTHESNIFNTLTVDTIYPAYVLGSFLTPISWGLHVAAWIQKMN 127
            MK F  LL  V L   ++AF+ P A   +A       R    +  +     TYWEGKAPPS VLGP L+K PS  LG  SL A   G+YC HE+NI +T++ D I P YV G+ L PISWGLHVA+WIQK N
Sbjct:    1 MKLFAFLL--VVLIGAASAFVSPSAFKGSALAAPRATRATSKVSATPVMLDTYWEGKAPPSEVLGPALAKAPSAGLGVVSLAAFAAGTYCIHETNILHTVSPDNIQPLYVAGALLVPISWGLHVASWIQKQN 130
The following BLAST results are available for this feature:
BLAST of NO09G01140.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBN78451.12.000e-2249.24conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G01140NO09G01140Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G01140.1NO09G01140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G01140.1.cds1NO09G01140.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G01140.1.cds2NO09G01140.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G01140.1.cds3NO09G01140.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G01140.1.cds4NO09G01140.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G01140.1 ID=NO09G01140.1|Name=NO09G01140.1|organism=Nannochloropsis oceanica|type=mRNA|length=907bp
GGGCGAAGCCCGATCCCACTTCCTTATCCTTTCCCTGACCCAGCGACAGC
GCCCGCTGGAGCTGTGGGGAAGACCAAGATGGGCTGGAGTTGATCCCAAG
CTTGACTGGGGAGTTCCCCATCATCTTTCTCATATCTAGCCCACACAACT
TGCTTTGCTGGCTCGTGTCTCCTCTTCATACCTTGTTCCCGCCAGCGCGA
CAACCATCCTAATCTTTCATCCTTTTCCTTCTGTACGTTTACACGTCCTA
CCGAACAGGTAGCATCCCCACAACACACTCACGTCTTTTCAAGAATGAAG
ACCTTTTGCATCCTTCTGGCCCTCGTCGCCCTGTTCAACTTTTCCAATGC
TTTCATGCCCAAGGCGCCCGTGCACACTGCCCGCCCCGTCGTCGCCCGCG
GCCGCACCATGAAGATGATGGAGGAGAGCACCTACTGGGAAGGCAAGGCC
CCCCCGTCCGTCGTGCTGGGCCCCTTTCTTTCCAAGATCCCCTCCGGTGT
GCTTGGCCCTGCCTCCCTCGTCGCCCTCATTGTGGGCTCCTACTGCACGC
ACGAGTCCAACATCTTCAACACCCTCACCGTCGACACCATCTACCCCGCA
TACGTGCTTGGATCTTTCCTGACGCCCATCTCCTGGGGCTTGCACGTTGC
TGCCTGGATCCAGAAGATGAATAAGGCTTAAATGAAACGCCATGGCGGCT
TGAAGAGAGCAGGACAGGTGGATAGATTGAACGCGGATTGCCGCATTAGT
TTTTGTTTTCTTTCCTGCTGTCTCGCTTCTGGACGATACTGCCACTTCCA
CTGCGGCTCGATTTAAGAAAAAGAGAAAAGGAAACAGAAAAAGAGACTCG
CATACCCTTGATAAAGCAAGAAAGGCAAAGAAAAAAGGAAGTTTGAAGAT
CATCCGA
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protein sequence of NO09G01140.1

>NO09G01140.1-protein ID=NO09G01140.1-protein|Name=NO09G01140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=129bp
MKTFCILLALVALFNFSNAFMPKAPVHTARPVVARGRTMKMMEESTYWEG
KAPPSVVLGPFLSKIPSGVLGPASLVALIVGSYCTHESNIFNTLTVDTIY
PAYVLGSFLTPISWGLHVAAWIQKMNKA*
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mRNA from alignment at chr9:368464..369906-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G01140.1 ID=NO09G01140.1|Name=NO09G01140.1|organism=Nannochloropsis oceanica|type=mRNA|length=1443bp|location=Sequence derived from alignment at chr9:368464..369906- (Nannochloropsis oceanica)
GGGCGAAGCCCGATCCCACTTCCTTATCCTTTCCCTGACCCAGCGACAGC
GCCCGCTGGAGCTGTGGGGAAGACCAAGATGGGCTGGAGTTGATCCCAAG
CTTGACTGGGGAGTTCCCCATCATCTTTCTCATATCTAGCCCACACAACT
TGCTTTGCTGGCTCGTGTCTCCTCTTCATACCTTGTTCCCGCCAGCGCGA
CAACCATCCTAATCTTTCATCCTTTTCCTTCTGTACGTTTACACGTCCTA
CCGAACAGGTAGCATCCCCACAACACACTCACGTCTTTTCAAGAATGAAG
ACCTTTTGCATCCTTCTGGCCCTCGTCGCCCTGTTCAACTTTTCCAATGC
TTTCATGCCCAAGGCGCCCGTGCACACTGCCCGCCCCGTCGTCGCCCGCG
GTAAGCAAGCATTTGAAGGACATGCAGATTGAGTGTCTAGTTTAGACATG
GAGACGGCTCCCATGCCAAGACAATGCCTTCCTGAACACTCACTCAACTC
TCCCCCCGACAGGCCGCACCATGAAGATGATGGAGGAGAGCACCTACTGG
GAAGGCAAGGCCCCCCCGTCCGTCGTGCTGGGCCCCTTTCTTTCCAAGAT
CCCCTCCGGTGTGCTTGGCCCTGCCTCCCTCGTCGCCCTCATTGTGGTAC
GTTTTTTTAAATATCAGATTTGCGAAAAAAAGGAGGGGGGAGGGAGAGAG
CGCGCAAGAAATAGAGGTAGATGCATGAACGGAAAAGAGAAGAAAACCGG
AAGGACGCTAAGCTGCCTCTACATTTGAATGCTTTCACGATTTACAGGGC
TCCTACTGCACGCACGAGTCCAACATCTTCAACACCCTCACCGTCGACAC
GTGAGTCCTTCTTTTCCTTTGAATTTCTTGTTGTCTTTTTCCTGTGATTT
TCCCGACTTGTACATGCATGCGATGGCCCGGCCCTCCGGAAGTAGCGCCA
TGGGAGATGAACGAGGAGGGTCGTATAAGTCCTAGTCATTTAAAATCTTA
AAATGCCCTTCCTCCCTTCCTTCCTGCCTGCTTTCTTCTTCTTCGAGGTC
TTTCTATGTCAGATAAACAAGGCCCGCCTCTATGCACCGCCGTTCACCCC
CCCCCCCCCTTCCCCCACCACAGCATCTACCCCGCATACGTGCTTGGATC
TTTCCTGACGCCCATCTCCTGGGGCTTGCACGTTGCTGCCTGGATCCAGA
AGATGAATAAGGCTTAAATGAAACGCCATGGCGGCTTGAAGAGAGCAGGA
CAGGTGGATAGATTGAACGCGGATTGCCGCATTAGTTTTTGTTTTCTTTC
CTGCTGTCTCGCTTCTGGACGATACTGCCACTTCCACTGCGGCTCGATTT
AAGAAAAAGAGAAAAGGAAACAGAAAAAGAGACTCGCATACCCTTGATAA
AGCAAGAAAGGCAAAGAAAAAAGGAAGTTTGAAGATCATCCGA
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Coding sequence (CDS) from alignment at chr9:368464..369906-

>NO09G01140.1 ID=NO09G01140.1|Name=NO09G01140.1|organism=Nannochloropsis oceanica|type=CDS|length=387bp|location=Sequence derived from alignment at chr9:368464..369906- (Nannochloropsis oceanica)
ATGAAGACCTTTTGCATCCTTCTGGCCCTCGTCGCCCTGTTCAACTTTTC
CAATGCTTTCATGCCCAAGGCGCCCGTGCACACTGCCCGCCCCGTCGTCG
CCCGCGGCCGCACCATGAAGATGATGGAGGAGAGCACCTACTGGGAAGGC
AAGGCCCCCCCGTCCGTCGTGCTGGGCCCCTTTCTTTCCAAGATCCCCTC
CGGTGTGCTTGGCCCTGCCTCCCTCGTCGCCCTCATTGTGGGCTCCTACT
GCACGCACGAGTCCAACATCTTCAACACCCTCACCGTCGACACCATCTAC
CCCGCATACGTGCTTGGATCTTTCCTGACGCCCATCTCCTGGGGCTTGCA
CGTTGCTGCCTGGATCCAGAAGATGAATAAGGCTTAA
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Synonyms
Publications