NO09G01030, NO09G01030 (gene) Nannochloropsis oceanica

Overview
NameNO09G01030
Unique NameNO09G01030
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3952
Alignment locationchr9:344876..348827 +

Link to JBrowse

Properties
Property NameValue
DescriptionZn(2)-C6 fungal-type DNA-binding domain protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:344876..348827 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO:0006357regulation of transcription by RNA polymerase II
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0000981DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0008270zinc ion binding
GO:0008270zinc ion binding
GO:0003677DNA binding
GO:0000981DNA-binding transcription factor activity, RNA polymerase II-specific
Vocabulary: INTERPRO
TermDefinition
IPR036864Zn2-C6_fun-type_DNA-bd_sf
IPR001138Zn2-C6_fun-type_DNA-bd
Homology
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BLAST of NO09G01030 vs. NCBI_GenBank
Match: EWM27679.1 (Zn(2)-C6 fungal-type DNA-binding domain protein [Nannochloropsis gaditana])

HSP 1 Score: 704.1 bits (1816), Expect = 6.400e-199
Identity = 490/759 (64.56%), Postives = 534/759 (70.36%), Query Frame = 0 
Query:    1 MTTLLGQPPSSLGAMGSAFYDEDAQSVVALGQHAAGSGTEDEMDTDHFDELDRIIFDMPYVSEQDPLSSCSVGGQSQGQTNGQGHGHQERGASQHGGAGLLMPNPHNGH--IHGDGGHHINHNNHGSVRGGGMDWHAKEEDASYHTAVDSSCHTDRSYHRVDAXXXXXXXXXXXXXXXXXXXXXXIDSSGHYDDFAAHKGDPRYMEHSCEACKRSKKRCNRRNPCQICTSRGIKCVPQIRGPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNGLLQXXXXXXXXXXXXXXXXSPPRDPWHCRFFFEAARHCKEAFLKAWHDNELDTSKCIMLRNLWTKTSSILASGVDMTFGICDQLQEVVGPAPTGSGPIACSPATRSKSQAAQQAQLLSHPGSKEGMGPWNLPDDLRKMDDGVSMLCGFMFIQDELFVFTDERFAATFMTREEVEGKVESFAVLPILLLAEIFHPDDLPDVYAAIGAHWFRRRPSSGVGVGGSNGSISSXXXXXXXXXXXXXXXXXXXXXEVPEAAWICKCIDKRNTEITALVRFRSFAAPTEGYAGAAMLSILPLTRSKYIADPDVQTNMRSGVSSRHHLRDTFGALPTALPEHXXXXXXXXXXXXXXXXXGERVGASGHGQDLLNEEEDDEIFLDAHGDDAMFRPLRRGMTVLSAETSGPQPVPLSKHASDPLPHHNEHHFHSQPQHTSSHLSSLSSMASHQTGVSWGG 758
            MTT L   P+    +GS  + E +  VV   +   G G++DEMDTDHF+ELD  IFD+ Y +EQDP       G                  +Q GGA LLMP+PHN H  I  DG     HN+       GMDW AK+ED SYHTAVD+SCH D SYH VDAXXXXXXXXXXXXXXXXXXXXXX DSSGHYDD+ AHKGD RYMEHSCEACKRSKKRCNRRNPCQICTSRGIKCVPQIRGPG                         XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNGLLQ                SPPRDPWHCRFFFEAARHCKEAFL+ WHDNELDT+KCIMLRNLWTK SS LASG DMTFGICDQLQEVVGPAPTGSGP+A SPATRSKS AAQQAQLL+HPGSKE MGP  LP DLR+M+DGVSMLCGFMF+QDELFV+TDERFAATFMTREEVE KV S AVLPILLLAEIFHPDDLPD+YAAIGA+WF R                 XXXXXXXXXXXXXXXX       PEA+WICKCIDK NTE+TA VRFRSF AP EGY GAAMLSILPL  SKY+ADPD + ++RSGVSSR  +RDTFGALPTALPE                   +R+   G G     E +D E       DDA+FRPLRRGMTVLS ETSGPQ VP++K  SDP   H +H  +SQP   + H+S LSS      G+SWGG
Sbjct:   78 MTTFLNPGPAREKLVGSGVFFEGSIGVVG-HESGGGVGSQDEMDTDHFNELDH-IFDLSYSAEQDPF------GSXXXXXXXXXXXXXXPPQTQLGGASLLMPHPHNSHGAISHDGSR--MHND-------GMDWRAKDEDCSYHTAVDASCHIDSSYHHVDAXXXXXXXXXXXXXXXXXXXXXXXDSSGHYDDYLAHKGDARYMEHSCEACKRSKKRCNRRNPCQICTSRGIKCVPQIRGPG----RPPGSKSSRGCTSLSLSSSRHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNGLLQ----QGQELAVGARRHSPPRDPWHCRFFFEAARHCKEAFLRTWHDNELDTAKCIMLRNLWTKVSSQLASGTDMTFGICDQLQEVVGPAPTGSGPMAGSPATRSKSHAAQQAQLLTHPGSKEAMGPHCLPLDLRRMEDGVSMLCGFMFLQDELFVYTDERFAATFMTREEVESKVGSLAVLPILLLAEIFHPDDLPDIYAAIGAYWFSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG-----TPEASWICKCIDKANTEVTAFVRFRSFVAPAEGYPGAAMLSILPLKPSKYLADPDTKGSVRSGVSSRLQMRDTFGALPTALPEQDDEDLGDDLVGRRPSV--DRMEGLGPG---AGEGQDPE------SDDALFRPLRRGMTVLSDETSGPQAVPVAKQVSDPGVQHQDHACYSQP---TIHISQLSSALRSTVGLSWGG 792
The following BLAST results are available for this feature:
BLAST of NO09G01030 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27679.16.400e-19964.56Zn(2)-C6 fungal-type DNA-binding domain protein [N... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL119nonsL119Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010581NSK010581Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G01030.1NO09G01030.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|24259gene_4452Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100104g18gene2875Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G01030.1NO09G01030.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G01030 ID=NO09G01030|Name=NO09G01030|organism=Nannochloropsis oceanica|type=gene|length=3952bp
ATGACGACCCTCCTTGGACAGCCCCCCTCCTCGTTGGGGGCGATGGGGAG
TGCATTTTACGATGAGGACGCTCAGAGCGTCGTGGCCCTCGGCCAACACG
CTGCAGGCAGTGGCACGGAGGACGAGATGGATACAGACCATTTCGATGAG
TTGGACCGCATCATCTTCGACATGCCGTACGTGTCAGAGCAGGATCCCTT
GAGCAGCTGTAGCGTCGGAGGGCAGTCGCAAGGGCAAACCAACGGGCAGG
GCCATGGGCACCAAGAGCGGGGGGCGTCACAGCACGGGGGCGCGGGTCTC
TTGATGCCTAACCCCCACAATGGCCACATCCACGGTGATGGGGGTCACCA
CATAAATCACAACAACCATGGAAGCGTCCGAGGGGGAGGGATGGACTGGC
ACGCGAAGGAGGAGGACGCCTCATATCATACTGCGGTGGACTCCAGCTGT
CACACTGACCGGAGCTACCATCGTGTGGATGCCTCGGGGCATTCCATGAT
CGACGCCTCCAGCCATAGCATGATGGATGCATCGGGGCACGAGTCCCTGA
TTGATTCGAGTGGGCATTACGACGACTTCGCCGCGCACAAGGGCGACCCC
AGATATATGGAGCACAGCTGCGAGGCCTGCAAGCGATCCAAGgtaaggag
cggtgggatggagtttgaaatgataggtatttgctttgggatagtccgtg
aatcttcgacacacacggcttaatgataattgttggttggtttggttgtc
ccttcttttcgtgtgttttgtctcgtccagcatctgaactgagctccatc
tgcttgtggcgactgtcgcccttctccattttacaacggcccccagcctc
actttctactctcatttcaagatgtcgaattaattgtctccaggccttac
tgcacatttgtatttgcccttccattttttgtattgagtgtacctcaagt
cacatgcaaccacttgtcgatctatccccgaacattaattaacccgccgt
gagactccctctcccttttcgtccgtgcaaaggccccaccacggctacac
attacacgtcctcccatgttttttcacggaaatcgatggtgctgatcatt
caattcaacccacactctcctccctacttctcccccagAAACGCTGTAAC
CGTCGCAACCCCTGCCAAATATGCACCTCCCGAGGCATCAAGTGCGTGCC
CCAAATCCGCGGACCCGGTCGTCCTCCAGGCAGTAAGAGCAGCAGAGGCT
CCTCCTCCTCTTCCTCCCTCACTCTGGGCAGTTCCCGCCATGGTGGCTCC
CGGGGAGATGTGCGCTCTTCCCTCAACAGCACCCAGCATAGCACCAACAG
CAGTGCCACCACCTCCGCCGCATCTTCCACTGCCTCCTCCCTCTCTCGCT
CTTTGTCTGGTAACGGGTTGTTACAGCAAGAGCAGGACTTGGTGGTAGTG
GCTGCTGCTGCTTCTACGAGACAATCCCCTCCAAGGGACCCTTGGCACTG
TCGATTCTTCTTCGAGGCGGCGCGGCATTGCAAGGAGGCGTTTCTGAAGG
CCTGGCATGACAATGAGTTGGATACGTCCAAGTGTATTATGCTCAGgtac
gtgcgtgcaagtttttttgggcgacttggttacccgatgtgtatgggtcg
gtggggtagttctgttggtcattcccctcccttctctcactcactcaccc
ccttcaccttcccccccccctcctttttatcctcccagGAACCTCTGGAC
CAAGACGTCCTCCATCCTCGCCTCAGGGGTCGACATGACCTTCGGTATCT
GTGACCAGCTCCAAGAAGTGGTTGGGCCCGCCCCAACGGGCTCGGGCCCG
ATTGCCTGTAGTCCTGCGACGAGAAGCAAGAGCCAGGCGGCGCAACAAGC
CCAGCTCTTGTCGCACCCGGGGTCGAAGGAGGGAATGGGTCCTTGGAATC
TGCCCGATGATTTGAGGAAGATGGATGATGGAGTGTCGATGTTGTGTGGG
TTCATGTTTATCCAGGACGAGTTGTTCGTGTTTACAGACGAGAGGTTCGC
CGCTACATTCATGACACGCGAGGAGGTGGAGGGGAAGGTGGAGAGCTTCG
CAGTGTTGCCGATACTGTTGTTGGCGGAGATATTCCACCCTGACGACCTA
CCTGATGTTTATGCAGCAATTGGCGCGCATTGGTTTAGGCGGCGGCCGAG
CTCTGGTGTAGGGGTGGGGGGAAGTAATGGGAGTATCAGCAGCATGAACA
GCAGTAGCGGTAGTACGAGCAGTAGGGACTCGGCAAGCCCGGGGCCAGTG
TCTCGGGAGGTACCTGAGGCGGCTTGGATTTGCAAATGCATTGATAAGCG
GAATACGGAGATAACGGCCTTGGTGCGGTTTCGGTCATTTGCGGCACCGA
CGGAGGGTTACGCGGGTGCGGCTATGTTATCGATCTTGCCGTTGACAAGA
AGCAAGTATATTGCGGATCCGGATGTACAGACGAACATGAGGTCGGGGGT
GTCGTCGAGGCACCACTTGAGGGATACATTTGGGGCATTGCCTACTGCTT
TGCCGGAGCACGATGACGAAGACGATGACGACGAGCATCACCATCTGGTG
TTAGAAAGGAGAGGGGAAAGAGTGGGGGCGTCGGGGCATGGCCAGGATTT
GTTAAATGAGGAGGAGGACGATGAAATTTTTTTGGATGCACACGGTGACG
ACGCTATGTTCCGGCCCTTGCGGCGGGGGATGACGGTGTTGTCGGCTGAG
ACGAGCGGTCCTCAACCGGTGCCTCTTTCCAAGCATGCCTCTGACCCTCT
ACCTCATCACAACGAGCACCACTTCCACAGCCAGCCCCAGCACACCTCTT
CTCATTTGTCTAGTTTGAGTAGCATGGCGTCGCATCAGACAGGCGTGTCG
TGGGGGGGTGGAAGGATTTCTGAATGCCTGGGGAACCAAAACCGCAGCGC
CTCGCAATTCTACAACACAGTGCAGCATCAAGAGCGGCCTAAGCGGGAGC
AAGAGGAGCCGCACCAGCAGCACCGTGAAGAACAACAGCAACATCGCCTT
CCAGGCAACAATAGCTTGGACGGGAGCAGCAGCCACGGAGGCGCCATGGA
CCAAGACCTCCCTACTGTTCAGCTGACCCAGGCGCAGCTCTTCCTCTTGC
AGGGGGGCACTGGCAGTGGCATCGGTTTATTTAAAGATATACAGCAGGAG
CAGCAGCACATGTGCAACCAGATTTCGCCAGACGGCGTGACAGCAGCGGA
GGAGAGCGCAGAGAGAGTCGCTACTGAGCTGTACGGTTCGAGTCCCAGTC
CGGAGCCGCACCTCCTTGGCCATTCCCGTCACAGCCCAACGCAACGTGCA
CAGCAGCAGCAGCAGCAGCAGAAAAGGCAACAAGAACGCCAGCAAGAAGA
TCAGCAACAAGAACAAGGACATCAACAGCAGCAACAGCAGCAACAGCAGC
AGGGGATGGTGCTGCCCCTGCCACACCTGCCTGGGATGGTGCCGTCGCTT
GTCCGCACCGTGAGCAGCAGCGCCATGTTGGGTGCCCGCCCCACAACCAT
ATCCCAAGGAAAGGACGAAGGGGGACGTGGAGGGGCGTTGAGTCACAGCA
ATAGCAGCACCGACCTGGATATGTCTTGTCATGGCCCGGCGGATCCGAAT
GGgtatggtggattgcattggacgccggcgccattggcttcttttttggg
ggtttcctcttggggatcaaggcgtggctcaaggaaggaggagagatcta
aagattagagactgctcaatcttctgggagTCAGTCGCCGGAGAAGCAGA
AGAGGAGGATTGAGCTGGCGGTATTACGGGGGACGCGGGTGAGAAGTTGC
AGCTCGACGGATGGTGGTGGTGCTGCTGCTGCGGCGGCGGCGGCGGCTGA
GGCAGCTGAGGCGGCGTTGCCTGTTTTTGACGCTCATTCCTTTGATGCTT
AA
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protein sequence of NO09G01030.1

>NO09G01030.1-protein ID=NO09G01030.1-protein|Name=NO09G01030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1062bp
MTTLLGQPPSSLGAMGSAFYDEDAQSVVALGQHAAGSGTEDEMDTDHFDE
LDRIIFDMPYVSEQDPLSSCSVGGQSQGQTNGQGHGHQERGASQHGGAGL
LMPNPHNGHIHGDGGHHINHNNHGSVRGGGMDWHAKEEDASYHTAVDSSC
HTDRSYHRVDASGHSMIDASSHSMMDASGHESLIDSSGHYDDFAAHKGDP
RYMEHSCEACKRSKKRCNRRNPCQICTSRGIKCVPQIRGPGRPPGSKSSR
GSSSSSSLTLGSSRHGGSRGDVRSSLNSTQHSTNSSATTSAASSTASSLS
RSLSGNGLLQQEQDLVVVAAAASTRQSPPRDPWHCRFFFEAARHCKEAFL
KAWHDNELDTSKCIMLRNLWTKTSSILASGVDMTFGICDQLQEVVGPAPT
GSGPIACSPATRSKSQAAQQAQLLSHPGSKEGMGPWNLPDDLRKMDDGVS
MLCGFMFIQDELFVFTDERFAATFMTREEVEGKVESFAVLPILLLAEIFH
PDDLPDVYAAIGAHWFRRRPSSGVGVGGSNGSISSMNSSSGSTSSRDSAS
PGPVSREVPEAAWICKCIDKRNTEITALVRFRSFAAPTEGYAGAAMLSIL
PLTRSKYIADPDVQTNMRSGVSSRHHLRDTFGALPTALPEHDDEDDDDEH
HHLVLERRGERVGASGHGQDLLNEEEDDEIFLDAHGDDAMFRPLRRGMTV
LSAETSGPQPVPLSKHASDPLPHHNEHHFHSQPQHTSSHLSSLSSMASHQ
TGVSWGGGRISECLGNQNRSASQFYNTVQHQERPKREQEEPHQQHREEQQ
QHRLPGNNSLDGSSSHGGAMDQDLPTVQLTQAQLFLLQGGTGSGIGLFKD
IQQEQQHMCNQISPDGVTAAEESAERVATELYGSSPSPEPHLLGHSRHSP
TQRAQQQQQQQKRQQERQQEDQQQEQGHQQQQQQQQQQGMVLPLPHLPGM
VPSLVRTVSSSAMLGARPTTISQGKDEGGRGGALSHSNSSTDLDMSCHGP
ADPNGQSPEKQKRRIELAVLRGTRVRSCSSTDGGGAAAAAAAAAEAAEAA
LPVFDAHSFDA*
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Synonyms
Publications