NO09G00720, NO09G00720 (gene) Nannochloropsis oceanica

Overview
NameNO09G00720
Unique NameNO09G00720
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4210
Alignment locationchr9:259143..263352 +

Link to JBrowse

Properties
Property NameValue
DescriptionArmadillo-like helical
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:259143..263352 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Vocabulary: INTERPRO
TermDefinition
IPR016024ARM-type_fold
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO09G00720 vs. NCBI_GenBank
Match: EWM27708.1 (Armadillo-like helical [Nannochloropsis gaditana])

HSP 1 Score: 181.0 bits (458), Expect = 1.200e-41
Identity = 196/684 (28.65%), Postives = 286/684 (41.81%), Query Frame = 0 
Query:    2 STSRFHREWSTQSFLMLTRKYPEQGVQAFHRLTKETQSRLLRDHPILQASMPRHTRRGSXXXXXXXXXXXXXXXXLLISPLTSASFTSPLPARKRL-----------------------SXXXXXXXXXXXXXXXXXXXXXXXXXXXLHQKLLKFKLENNPRFKDAALQAALSRPVAWELSSDDGSTSSSIRSDGTGPNSGSRDANSASRRAEQMLRHKMNVMSPTDYHLIAEAHANNRLLVGGLASPKSPMILFQQDLNHRLANLDHMREEDAVMPAIAQAAAPXXXXXXXXXXAGRLDEGGNVAEQYLDCNTRAAAQFNQNEDHYE-GDDENTSTIQGSNSTRKGIVATCNGHSFSSRSKRVSFADELIVTLSPATP-LFLPTPIQDRFQQDDRNSLDGSIRPSDEQGSDKD-ERDEEEDVVCFDHDSGIDEQDLSVSKKSLIGDIAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQEIECVNPRNCSSRAYLLLLISISVF--FVTGLVNFLSEQEALGIAPLLQRQRATDVHISP----EPRREKSKPPPVDIAIPRAKDPNVITPIMVNRADPTSSPEQKHLPFREQQKCVGADDLSVIAGMESCFELKSQSRLMRKDIQPTQEKNVWHHVRHAMERLINYRMLGVLLGYTLLFSFLL 654
            S+++  R+W+TQSFL L RK+P QG Q F  L +E Q RL RDHP L+                           L   P  S S+ SP  ++KRL                                                   LHQKLLKFKLEN+ RFKDAAL AALS P+AW+LSSDDGST+SSI+SDG GP+   R  ++A+RRA+Q+L+HK+N+MSPTD H++AEA AN   +      P SPM  FQ            +    A M        P             +    N   + + C             H E G DE  S  QG       +  T      S   K VSF+ E +V  + A+P L L +   ++  ++ R   +  +R SD+QG DK  E +E E    FD ++ ++EQD S SKK+L GDIAEE                                                ++++ V  +  ++  +L + +++  F   V GLV  + +     +    ++   T V   P          + P   +    +        P  +   DP +   Q+ +    QQ  V     SV++  E   +L       R  +QP Q+K V   +  A++RL N+R++GVLL Y+L++  L+
Sbjct:  200 SSNKAQRDWATQSFLALNRKWPTQGSQVFQALPREIQIRLARDHPHLE--------------------------MLRQKPRYSPSYKSPSNSKKRLQNRPPLSKQKDVLSGGSVAVEGKKAGPDGSRIWEDDPRGASGRSPSTSQQELHQKLLKFKLENDARFKDAALYAALSHPIAWDLSSDDGSTASSIQSDGNGPSHAFRYTDNATRRAQQVLQHKLNMMSPTDKHMLAEAKANPGPIKNVATYPDSPMQKFQXXXXXXXXXXXDLNLSVAAM--FEAEVQPFSALEELPTSQAHVTWQENKETRSVLCKA----------THIEAGRDEERSPQQGHKDRSNRLFRTIRS---SHLEKHVSFSAENVVINTSASPSLPLHSSHLEQAAEESRTFDEARMRTSDDQGLDKGIEGEEIEMEESFDFNN-VEEQDFSSSKKNLKGDIAEE-------------------------CAGIVIEDRDLFEYANRRKPSNEEKLKLVKGKVQAACVFLFICMTMICFLTLVLGLVKNVYKHTGSSVQARHKKPSITQVSFVPCSSGTNLPVNNSPTNRETGTEKEAPATQTRPAPLTILDPIACAHQEIIRVARQQ--VKQHRGSVLSNEELRDQLAP-----RNGLQPVQKKCVRSFMYEALQRLFNFRIVGVLLCYSLIYVLLV 809
The following BLAST results are available for this feature:
BLAST of NO09G00720 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27708.11.200e-4128.65Armadillo-like helical [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL119nonsL119Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010539NSK010539Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G00720.1NO09G00720.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO09G00720.2NO09G00720.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589279gene_4486Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100034g17gene2842Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G00720.1NO09G00720.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO09G00720.2NO09G00720.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G00720 ID=NO09G00720|Name=NO09G00720|organism=Nannochloropsis oceanica|type=gene|length=4210bp
CTCCTCAGGAAGCAAGAAACCCTGCGGTCATGTGCGGATGTATATGGATA
GATAAGAGTGAGTAAATGTCAAAGACATACGACAAAAAACTAGCGTGAGG
CAACGGAGAGACGAAAGAAGGCAAGTCAGGAGGCGGATGGTGGAAAAGCC
CACAACCAACGCTTCTGATGACCGCCTCCTCCCATCCTTGACCACAGTTA
CACACTGTGCCAAAATGAGGCACGTTTAATCTCTTTTCTACGTAACAAGA
TTGATCAAACGCAGTGAGTCGTGGGGTGGGGGGGGGCAAACGGCACAGTG
AGGAAGCCGTGAGTGGTTTGCAGGCCTTGGGTTTTCCACACATAATAATA
TATTGATGAAATATAACATTGACTTGGTCAAGGCAAAGCACCGTGTTTCA
TTTAAGGATTTTTTGACACGTGCCGAAACAGGCCAACTCTAGACCTTGCA
GGATCTACTCCAAGGGGAGAAGAGCTCAAATCCTCTGCACTGGAACAAAC
TTGGAGCCTGTGCTGTGCGGCTCTGACACACATGTATGCCCATTTTCGTC
AATCTCGTCTTCACACATCATCGCCGAAGGAACCTCCCCCCCTCGGTTGT
CCTAAGGAGTCCTTCCAAGCACCTACCTTCCCTTAGACTTGTGACGTGTT
CCCAGAGGCATACACCCTCCAATCTTCATTTTGACGAAAGTTTTTGGCCT
GTGTCGCCGACATTGATTTGTCCTTTGTCCATTTGTCCTTAGGTGCCTTA
CTTAGTCTCCCTCTATGCCATATATTCTAATTTCAAATATGCCAGCCAGC
AGTTTACAAGACAGCAATGTCTACAACGAGAAGTTGCACATTACATGCCC
CACATATGCCATGTCCAAGTTGGATTACAAATTCTTTCGTTTTTTTTACC
CGCACAGGCAAACATGGACGCGGCAGATGCCGATGACACCACTACCCCTA
CCACCAATATAAGCAACCGGGGCTTTGATTTGGTCGGCTTCACGTTGGCT
TTGGACAACTTGACACTTCTGgtgagtacctcgtcattcattcacttcct
cgttctcccctcttagacaagaaggaggaaaatgtgccgatgaacctggc
ttatatttgtatgtacatcttctcactcatacacatctcaatcaaacttc
ttttaacagGTGGAAGATGAATCCCGGCGTGGAGATCTGACCTCCATGCA
CAACCTGCTGAGGCGCGTTCAAAAGCTCTACAAGATTTTGAGAGAGAAAG
CAGAGGTGGCCGATCCGGATGTCATGGTGGCGCTCGGCAAGGTTCTGGCC
TTTTTCCTAAATCTCGATCGCGTCAAGGACGAGCCGCTTTGTCGCGAGGC
CTGCAATTTTGTCTCTCTTTTAGCTCGCGGATGGACGTACCGTGGTGCTG
AATTTGCTATGATCGTGACGCCTGATTTGCTGGCATGCCTGGAGAAGGGG
GACGGTGCCGTGAACAGCTCAGCCTATCAGGGTATGTGTGCTATTGTTTC
CCACTGCTACGAAGCGGAAGGGCGCTTGCTTGCACTGATTTTGGATGCCA
TGAACGGCAATACTCGGCGTCAGCTTTATCAGCTCATCAAAATTGCGATT
GAGAAGTGGCCCCCGTCCTCCGTCAAGGCGCACATGGCGGCCCTCCGGGA
GGTGAGGCGTGTATAGTGGCGTGTGATGTGATTACTCCCACACGATGCTC
CTTTTGGTTTCTCTGCTCTATGCTTCCGTCGAATCCTCTTTTCCTTCTCG
AGCTTGCCTCGCCTTGCTTGAAGTTCTTCTGTATCTGTCGGTCCTCACTC
ACTTACGCTCCTTTCAACTCATTTCGATTCCCCCCCTGCCCCCCAACATA
CACAGCGTCTTGCACTCGACATCATGTCCACAAGCAGGTTCCACCGCGAG
TGGTCAACGCAAAGCTTCTTGATGCTCACCCGCAAATATCCAGAGCAAGG
TGTACAGGCCTTTCACAGGCTCACAAAAGAGACGCAGAGTCGACTTTTGC
GCGATCATCCGATCCTCCAAGCATCCATGCCCCGGCACACGCGACGCGGC
AGCAGCAACAGCGGCAACAGCAGCAACAGCTCCTCCGTGACCTCCCAGTC
CCTGTTGATCTCCCCGTTGACTTCGGCGTCATTTACTTCACCGCTGCCTG
CAAGAAAGCGCCTGTCGGGCAGTACTGCTGCTGCAGCAGCAGCAGGGGAA
GGAGGTCCGCCGGTCACAAAACCTTCCTCGTCCGACAGCCAGCAAGAGCT
CCACCAAAAATTGCTGAAATTTAAATTGGAGAATAACCCCCGCTTCAAAG
ATGCGGCGCTGCAAGCAGCACTGgtatgtgacaccgttagggccttcgga
tcaagtgttactgctcattcttatactcacaagtcctaataatttctctt
cttcgtttccatccattaaacacagTCCCGTCCAGTGGCCTGGGAACTCT
CTTCAGACGATGGCTCCACGAGCAGCTCCATTCGAAGCGATGGAACGGGG
CCGAACAGCGGCTCCCGAGATGCGAACAGCGCCAGCCGGCGGGCCGAGCA
GATGCTTCGGCACAAGATGAACGTGATGTCGCCCACGGACTATCACTTGA
TTGCCGAGGCCCACGCCAACAATAGGTTGCTGGTGGGGGGGCTGGCCAGC
CCTAAGAGCCCAATGATTCTCTTCCAGCAGGATCTTAATCACAGATTGGC
GAACTTAGATCACATGAGGGAGGAGGATGCAGTCATGCCAGCGATTGCTC
AAGCGGCGGCTCCAGCAGATCCAGCAGCAGCAGCCGCTGCAGAAGCGGGG
AGATTGGATGAGGGCGGGAATGTCGCGGAGCAATATCTAGACTGTAACAC
TCGCGCTGCCGCCCAATTCAACCAGAATGAGGACCACTACGAAGGCGACG
ACGAAAACACCAGCACCATTCAAGGCAGCAACAGCACCCGCAAGGGCATC
GTTGCGACCTGCAATGGGCATTCCTTTTCTTCCCgtaagtacaaaaaagc
agaatccaaaaatacgaattcctccatcttattttacctccctctttcac
acacacggtcctagGCAGCAAGCGCGTCTCCTTTGCAGACGAACTTATCG
TTACCTTATCGCCAGCGACTCCGCTCTTCCTCCCTACCCCAATCCAGGAT
CGCTTCCAGCAAGATGACAGGAATTCGTTGGACGGATCAATTCGCCCTTC
GGATGAGCAGGGATCGGATAAGGATGAGAGGGACGAAGAAGAGGATGTTG
TGTGCTTTGACCATGATTCCGGCATAGACGAGCAAGATTTGAGTGTGTCT
AAGAAGAGTTTGATAGGTGACATAGCAGAAGAGAAAGAAAGGGAGATGGA
GGCGGAGGACGAGAAGAAGAAGAAGGAGGAGAAGGATGAGGTGGGAAATG
TGAATCCCAAGGAAGGGGAGAATGACGGGGAAATGGGAATGGGACTGAAT
CTGGGGTGGGATTTCCATTTCAGGACACAGGAGATCGAGTGCGTCAACCC
GCGCAATTGTTCCTCTAGAGCTTACTTACTACTCCTGATTTCGATTTCGG
TCTTTTTTGTTACGGGTCTTGTCAATTTCTTATCTGAGCAGGAAGCTCTC
GGCATTGCGCCACTGCTTCAGAGACAGAGAGCCACTGATGTTCACATCTC
GCCAGAGCCCCGTCGAGAGAAAAGTAAACCCCCTCCTGTCGACATTGCCA
TCCCCAGAGCAAAGGACCCAAATGTGATAACGCCGATCATGGTGAATAGA
GCGGATCCGACGAGTTCCCCCGAGCAGAAGCATTTGCCATTCCGGGAGCA
GCAGAAGTGTGTCGGGGCTGATGATCTCAGTGTAATTGCGGGCATGGAGA
GTTGTTTTGAACTTAAATCGCAGTCACGGCTGATGCGCAAGGACATTCAG
CCGACACAGGAGAAGAATGTGTGGCACCACGTTCGTCATGCCATGGAACG
TTTGATCAATTATCGGATGCTGGGTGTGTTATTAGGCTACACCCTGCTCT
TCAGCTTCCTACTGTAGAATCGATGATTTACAAGCAATATTTTTTTTCGG
ATTTATGGATGTATGCGGATGTATGTGAAGTTAGTCTTCGGGACTAAAGC
ACACGCACAGCACGTATGCATTCTCAGAGGGGAAAGATCATCCAAATGAA
AAGTAAAGAGTGTGTCCAAAGATACCCGCACGCTGAAGAATGAAGCTGAA
AATAGTTGCC
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protein sequence of NO09G00720.1

>NO09G00720.1-protein ID=NO09G00720.1-protein|Name=NO09G00720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=883bp
MPHICHVQVGLQILSFFLPAQANMDAADADDTTTPTTNISNRGFDLVGFT
LALDNLTLLVEDESRRGDLTSMHNLLRRVQKLYKILREKAEVADPDVMVA
LGKVLAFFLNLDRVKDEPLCREACNFVSLLARGWTYRGAEFAMIVTPDLL
ACLEKGDGAVNSSAYQGMCAIVSHCYEAEGRLLALILDAMNGNTRRQLYQ
LIKIAIEKWPPSSVKAHMAALRERLALDIMSTSRFHREWSTQSFLMLTRK
YPEQGVQAFHRLTKETQSRLLRDHPILQASMPRHTRRGSSNSGNSSNSSS
VTSQSLLISPLTSASFTSPLPARKRLSGSTAAAAAAGEGGPPVTKPSSSD
SQQELHQKLLKFKLENNPRFKDAALQAALSRPVAWELSSDDGSTSSSIRS
DGTGPNSGSRDANSASRRAEQMLRHKMNVMSPTDYHLIAEAHANNRLLVG
GLASPKSPMILFQQDLNHRLANLDHMREEDAVMPAIAQAAAPADPAAAAA
AEAGRLDEGGNVAEQYLDCNTRAAAQFNQNEDHYEGDDENTSTIQGSNST
RKGIVATCNGHSFSSRSKRVSFADELIVTLSPATPLFLPTPIQDRFQQDD
RNSLDGSIRPSDEQGSDKDERDEEEDVVCFDHDSGIDEQDLSVSKKSLIG
DIAEEKEREMEAEDEKKKKEEKDEVGNVNPKEGENDGEMGMGLNLGWDFH
FRTQEIECVNPRNCSSRAYLLLLISISVFFVTGLVNFLSEQEALGIAPLL
QRQRATDVHISPEPRREKSKPPPVDIAIPRAKDPNVITPIMVNRADPTSS
PEQKHLPFREQQKCVGADDLSVIAGMESCFELKSQSRLMRKDIQPTQEKN
VWHHVRHAMERLINYRMLGVLLGYTLLFSFLL*
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protein sequence of NO09G00720.2

>NO09G00720.2-protein ID=NO09G00720.2-protein|Name=NO09G00720.2|organism=Nannochloropsis oceanica|type=polypeptide|length=654bp
MSTSRFHREWSTQSFLMLTRKYPEQGVQAFHRLTKETQSRLLRDHPILQA
SMPRHTRRGSSNSGNSSNSSSVTSQSLLISPLTSASFTSPLPARKRLSGS
TAAAAAAGEGGPPVTKPSSSDSQQELHQKLLKFKLENNPRFKDAALQAAL
SRPVAWELSSDDGSTSSSIRSDGTGPNSGSRDANSASRRAEQMLRHKMNV
MSPTDYHLIAEAHANNRLLVGGLASPKSPMILFQQDLNHRLANLDHMREE
DAVMPAIAQAAAPADPAAAAAAEAGRLDEGGNVAEQYLDCNTRAAAQFNQ
NEDHYEGDDENTSTIQGSNSTRKGIVATCNGHSFSSRSKRVSFADELIVT
LSPATPLFLPTPIQDRFQQDDRNSLDGSIRPSDEQGSDKDERDEEEDVVC
FDHDSGIDEQDLSVSKKSLIGDIAEEKEREMEAEDEKKKKEEKDEVGNVN
PKEGENDGEMGMGLNLGWDFHFRTQEIECVNPRNCSSRAYLLLLISISVF
FVTGLVNFLSEQEALGIAPLLQRQRATDVHISPEPRREKSKPPPVDIAIP
RAKDPNVITPIMVNRADPTSSPEQKHLPFREQQKCVGADDLSVIAGMESC
FELKSQSRLMRKDIQPTQEKNVWHHVRHAMERLINYRMLGVLLGYTLLFS
FLL*
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Synonyms
Publications