NO09G00460, NO09G00460 (gene) Nannochloropsis oceanica

Overview
NameNO09G00460
Unique NameNO09G00460
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1804
Alignment locationchr9:196449..198252 -

Link to JBrowse

Properties
Property NameValue
DescriptionCoatomer protein complex,delta sub-unit
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:196449..198252 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006890retrograde vesicle-mediated transport, Golgi to ER
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0030126COPI vesicle coat
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR036168AP2_Mu_C_sf
IPR011012Longin-like_dom
IPR027059Coatomer_dsu
IPR022775AP_mu_sigma_su
IPR028565MHD
Homology
BLAST of NO09G00460 vs. NCBI_GenBank
Match: XP_012196775.1 (hypothetical protein SPRG_02798 [Saprolegnia parasitica CBS 223.65] >KDO32319.1 hypothetical protein SPRG_02798 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 387.5 bits (994), Expect = 7.000e-104
Identity = 250/562 (44.48%), Postives = 340/562 (60.50%), Query Frame = 0
Query:    1 MVVLSGAICTKNGKALLSRQFVEMSRIRIEGLLAAFPKLLGSGEEKQHTFIETETVRYVYQPIENLFLLLITNKASNIVEDLETLRLLSKIVPEVAGGVSEERVIDKCFELVFAFDEVLTTGGYRESVSLQQIKTNMEMDSHEEKLALMIKQSKMDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGVGGFXXXXXXXXXXSTGVSSSSYMPGTVDSNSASILETAPTKIASKGMKLGAPSKASTMLDSLVQEDNLSHIATTTAIAPTSTRGGAGGEAAVPAP--------VIQHQPIQLVVEEKIIAHLTRDGAVDAFEVKGSLTLTATTEAAARSKVVLGEGAGGGIVPVGLNFQTHPKVNKQEYDSSKVLVLKDTNKGFPVGRPVGVLRWSYSSTDESMVPLTLNCWPEEEGQGKMNISIEYQMNGQNRELHDVNISIPLGTAEPPQVAAVDGTFRHDPREQRLVWHMDLVDSSNASGALEFVVAGRDAGAFFPIIVSFASQMLYADVAVSAVTGLENAAPVPYSLSKSLTPDSYIV 555
            MVVLS A+  KNGK +++RQFVE+SRIR+EGLL AFPKLL S E +QHTFI+TE+VRYVYQPIEN FLLLITNK SNIVEDL T++L++K+VP++ G ++E  + +K F+LVF FDE+L  GG+ E+++L QI+TNMEM+SHEEKL LMI+++K +                                     XXXXXXXXXXXXX       XXXXXXXXX  T                A  L  A +K  + GMKLG     ++ LD++  ED+L  I      A           A++PAP                  +EEKI   L RDGAV+  EVKGSL +      +A  ++ L      GI     NFQTHPKV+K+ +++  +L LKD +K FP  R V VLRW+  + DE+ +PL + CWPEEEG GKM +S+EY M+ +N  L +VNI IPLG  + P V+ +DG +RH+  +  L+WH+D +  +N+SG+LEF + G D  AFFPI VSF S+ +Y D++V +V  + ++APV Y   + ++ D+Y+V
Sbjct:    1 MVVLSAALLAKNGKVMVARQFVEVSRIRLEGLLTAFPKLLAS-ESRQHTFIDTESVRYVYQPIENFFLLLITNKTSNIVEDLHTMQLMAKLVPDICGPLTEAHIREKQFDLVFGFDELLNAGGHSENINLAQIRTNMEMESHEEKLHLMIQKTKQENAIADMKRQQQRIKEEQREKARMEKAAGMSSPFNRNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPT-------------YTEAPKLSVATSK--TSGMKLGGSKPGNSFLDAMAAEDDLKEIPPMAMAA-----------ASMPAPXXXXXXXXXXXXXXXXXAIEEKISVSLNRDGAVEQLEVKGSLYVAGNDPESAVCRLHLRHSNANGI-----NFQTHPKVDKKLFEAQSILALKDDSKPFPPSR-VAVLRWAIKTQDETFLPLNITCWPEEEGNGKMTVSLEYSMD-RNMTLENVNIVIPLGATDLPAVSHIDGDYRHNAADGALLWHLDSISGANSSGSLEFSIRGADLDAFFPISVSFFSRSIYCDLSVDSVLRIADSAPVKYGFDQLVSTDAYVV 528          
BLAST of NO09G00460 vs. NCBI_GenBank
Match: XP_002184276.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC44454.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 386.3 bits (991), Expect = 1.600e-103
Identity = 229/568 (40.32%), Postives = 329/568 (57.92%), Query Frame = 0
Query:    1 MVVLSGAICTKNGKALLSRQFVEMSRIRIEGLLAAFPKLLGSGEEKQHTFIETETVRYVYQPIEN-LFLLLITNKASNIVEDLETLRLLSKIVPEVAGGVSEERVIDKCFELVFAFDEVLTTGGYRESVSLQQIKTNMEMDSHEEKLALMIKQSKMDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGVGGFXXXXXXXXXXSTGVSSSSYMPGTVDSNSASILETAPTKIASKGMKLGA-----------PSKASTMLDSLVQEDNLSHIATTTAIAPTSTRGG-AGGEAAVP--APVIQHQPIQLVVEEKIIAHLTRDGAVDAFEVKGSLTLTATTEAAARSKVVLGEGAGGGIVPVGLNFQTHPKVNKQEYDSSKVLVLKDTNKGFPVGRPVGVLRWSYSSTDESMVPLTLNCWPEEEGQGKMNISIEYQMNGQNRELHDVNISIPLGTAEPPQVAAVDGTFRHDPREQRLVWHMDLVD-SSNASGALEFVVAGRDAGAFFPIIVSFASQMLYADVAVSAVTGLENAAPVPYSLSKSLTPDSY 553
            MVVLS ++CT+ GKAL+SRQFVEM+R+R+EGLLAAFPKL+G    + HT++ET++VRYVYQP+EN ++LL+IT K SNIV+DL TLRLL+K+VP++ GG+ E  + +  F+L+FAFDEVLT+GGY+E  SL  I+TN+ MDSHEEK+ L +KQSK D                                                      GG            TG S   Y P       A  +   P  +A  GMKLG                  ++ ++  EDNL           T   GG A G ++ P         P+ LV+EEK+   + R+GAV++ EVKG+LTLTA T+A A + V + +      +P   ++ THPKV+K+ Y++S  L LK   KGFP+ R VG+LRWSY+  D  + PL++NCWPE+EG G +N++IE ++  ++  L DVNI +PLGT + P V ++DG F+HD R   + WH D VD ++NA+ ++EF + G D  AFFP+ V F S+ L   + +++VT  ++ A +P+S++KS  P++Y
Sbjct:    1 MVVLSASVCTRQGKALVSRQFVEMNRLRVEGLLAAFPKLVGH-TSQNHTYVETDSVRYVYQPLENQMYLLMITTKTSNIVQDLGTLRLLAKVVPDICGGLQEHAIHENAFDLIFAFDEVLTSGGYKEDASLSSIRTNLLMDSHEEKIHLALKQSKEDQAKAEMQRQAKTIKERQMAQLRNNMMQ---------------------------GG------------TGQSQPGYSP---YHTPAPAIPEPPKVLAKSGMKLGGGXXXXXXXXXXXXMKKDVMAAMAAEDNL--------FGGTGAAGGNAFGLSSAPPKQTATPSTPLTLVMEEKVTVQMNREGAVESAEVKGTLTLTANTDAGALALVNVNKAQ----LPAQFSYATHPKVDKKAYETSGTLTLKG-GKGFPLSRGVGILRWSYAGDD--VAPLSINCWPEDEG-GSINVNIEMELTRKDLVLQDVNILLPLGTTDAPVVESIDGVFKHDSRAGMMCWHFDQVDANTNATASMEFSIPGSDPDAFFPVQVGFRSETLLCPMEITSVTNSQSGAAIPHSMTKSFAPEAY 509          
BLAST of NO09G00460 vs. NCBI_GenBank
Match: XP_008604329.1 (hypothetical protein SDRG_00623 [Saprolegnia diclina VS20] >EQC41760.1 hypothetical protein SDRG_00623 [Saprolegnia diclina VS20])

HSP 1 Score: 385.2 bits (988), Expect = 3.500e-103
Identity = 270/562 (48.04%), Postives = 357/562 (63.52%), Query Frame = 0
Query:    1 MVVLSGAICTKNGKALLSRQFVEMSRIRIEGLLAAFPKLLGSGEEKQHTFIETETVRYVYQPIENLFLLLITNKASNIVEDLETLRLLSKIVPEVAGGVSEERVIDKCFELVFAFDEVLTTGGYRESVSLQQIKTNMEMDSHEEKLALMIKQSKMDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGVGGFXXXXXXXXXXSTGVSSSSYMPGTVDSNSASILETAPTKIASKGMKLGAPSKASTMLDSLVQEDNLSHIATTTAIAPTSTRGGAGGEAAVPAP--------VIQHQPIQLVVEEKIIAHLTRDGAVDAFEVKGSLTLTATTEAAARSKVVLGEGAGGGIVPVGLNFQTHPKVNKQEYDSSKVLVLKDTNKGFPVGRPVGVLRWSYSSTDESMVPLTLNCWPEEEGQGKMNISIEYQMNGQNRELHDVNISIPLGTAEPPQVAAVDGTFRHDPREQRLVWHMDLVDSSNASGALEFVVAGRDAGAFFPIIVSFASQMLYADVAVSAVTGLENAAPVPYSLSKSLTPDSYIV 555
            MVVLS A+  KNGK +++RQFVE+SRIR+EGLL AFPKLL S E +QHTFI+TE+VRYVYQPIEN FLLLITNK SNIVEDL T++L++K+VP++ G ++E  + +K F+LVF FDE+L  GG+ E+++L QI+TNMEM+SHEEKL LMI+++K +                   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       XXXXXXXXXX                  A  L  A +K  + GMKLG     ++ LD++  ED+L  I      A           A++PAP                  +EEKI   L RDGAV+  EVKGSL +      AA  ++ L      GI     NFQTHPKV+K+ +++  +L LKD +K FP  R V VLRW+  + DE+ +PL + CWPEEEG GKM +S+EY M+ +N  L +VNI IPLG  + P V+ +DG +RH+  +  L+WH+D +  +N+SG+LEF + G D  AFFPI VSF S+ +Y D++V +V  + + APV Y   + L+ D+Y+V
Sbjct:    1 MVVLSAALLAKNGKVMVARQFVEVSRIRLEGLLTAFPKLLAS-ESRQHTFIDTESVRYVYQPIENFFLLLITNKTSNIVEDLHTMQLMAKLVPDICGPLTEAHIREKQFDLVFGFDELLNAGGHSENINLAQIRTNMEMESHEEKLHLMIQKTKQE--------------NAIADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYTEAPKLSVATSK--TSGMKLGGSKPGNSFLDAMAAEDDLKEIPPMAMAA-----------ASMPAPXXXXXXXXXXXXXXXXXAIEEKISVSLNRDGAVEQLEVKGSLYVAGNDPEAAVCRLHLRHSNANGI-----NFQTHPKVDKKLFEAQSILALKDDSKPFPPSR-VAVLRWAIKTQDETFLPLNITCWPEEEGNGKMTVSLEYSMD-RNMTLENVNIVIPLGATDLPAVSHIDGDYRHNAADGALLWHLDSISGANSSGSLEFSIRGTDLDAFFPISVSFFSRSIYCDLSVDSVLRIADNAPVKYGFDQLLSTDAYVV 527          
BLAST of NO09G00460 vs. NCBI_GenBank
Match: OQS01160.1 (coatomer subunit delta [Achlya hypogyna])

HSP 1 Score: 383.3 bits (983), Expect = 1.300e-102
Identity = 233/556 (41.91%), Postives = 328/556 (58.99%), Query Frame = 0
Query:    2 VVLSGAICTKNGKALLSRQFVEMSRIRIEGLLAAFPKLLGSGEEKQHTFIETETVRYVYQPIENLFLLLITNKASNIVEDLETLRLLSKIVPEVAGGVSEERVIDKCFELVFAFDEVLTTGGYRESVSLQQIKTNMEMDSHEEKLALMIKQSKMDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGVGGFXXXXXXXXXXSTGVSSSSYMPGTVDSNSASILETAPTKIASKGMKLGAPSKASTMLDSLVQEDNLSHI---ATTTAIAPTSTRGGAGGEAAVPAPVIQHQPIQLVVEEKIIAHLTRDGAVDAFEVKGSLTLTATTEAAARSKVVLGEGAGGGIVPVGLNFQTHPKVNKQEYDSSKVLVLKDTNKGFPVGRPVGVLRWSYSSTDESMVPLTLNCWPEEEGQGKMNISIEYQMNGQNRELHDVNISIPLGTAEPPQVAAVDGTFRHDPREQRLVWHMDLVDSSNASGALEFVVAGRDAGAFFPIIVSFASQMLYADVAVSAVTGLENAAPVPYSLSKSLTPDSYIV 555
            VVLS A+  KNGK +++RQFVE+SRIR+EGLL AFPKLL S E +QHTFI+TE+VRYVYQPIE+ FLLLITNK SNIVEDL T++L++K+VP++ G ++E  + DK F+L+F FDE+LT GG+ E++++ QI+TNMEM+SHEEKL +MI+++K +                                                  R+   G XXXXXXXXXX        +         A  L  A +K  + GMKLG     ++ LD++  ED+L  I   A   A  P  T   A      PA  +  +P+ + +EEKI   L RDGAV+  EVKGSL +      +A                      THPKV+K+ +++  VL LKD +K FP  R V VLRW+  + DE+ +P+ + CWPEEEG GKM +S+EY M+ ++  L +VNI IPLG A+ P ++ +DG +RH+P +  L+WH+D V  SN+SG+LEF + G D  AFFPI VSF S+ +Y D+AV +V  + + + V Y   + ++ D+Y++
Sbjct:  284 VVLSAALLAKNGKVMVARQFVEVSRIRLEGLLTAFPKLLAS-ESRQHTFIDTESVRYVYQPIESYFLLLITNKTSNIVEDLHTMQLMAKLVPDICGTLTEAHIRDKQFDLIFGFDELLTAGGHAENINIAQIRTNMEMESHEEKLHMMIQKTKQE----------------NAIADMKRQQARIKEEQREKARMEKAAGLSSPFNRNSSYGXXXXXXXXXXXXXXXXXXXFKAPEPTYTEAPKLSAAASK--TSGMKLGGSKPGNSFLDAMAAEDDLKEIPPMAMAAANVPAPTAKPA------PAAAVSMEPVGIAIEEKISVVLNRDGAVEQLEVKGSLFVAGNDPESA----------------------THPKVDKKLFEAQSVLALKDDSKPFPPSR-VAVLRWAIKTQDETFLPINITCWPEEEGSGKMTVSLEYAMD-RDMTLENVNIVIPLGAADMPHISHIDGDYRHNPADGTLLWHLDSVSPSNSSGSLEFGIRGNDLDAFFPIHVSFFSRSIYCDLAVDSVLRIADGSAVKYGFDQLVSTDTYVI 790          
BLAST of NO09G00460 vs. NCBI_GenBank
Match: GAX28356.1 (hypothetical protein FisN_4Hh018 [Fistulifera solaris])

HSP 1 Score: 382.1 bits (980), Expect = 2.900e-102
Identity = 231/573 (40.31%), Postives = 319/573 (55.67%), Query Frame = 0
Query:    1 MVVLSGAICTKNGKALLSRQFVEMSRIRIEGLLAAFPKLLGSGEEKQHTFIETETVRYVYQPIE-NLFLLLITNKASNIVEDLETLRLLSKIVPEVAGGVSEERVIDKCFELVFAFDEVLTTGGYRESVSLQQIKTNMEMDSHEEKLALMIKQSKMDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGVGGFXXXXXXXXXXSTG------VSSSSYMPGTVDSN--------SASILETAPTKIASKGMKLGAPSKASTMLDSLVQEDNLSHIATTTAIAPTSTRGGAGG---EAAVPAP---VIQHQPIQLVVEEKIIAHLTRDGAVDAFEVKGSLTLTATTEAAARSKVVLGEGAGGGIVPVGLNFQTHPKVNKQEYDSSKVLVLKDTNKGFPVGRPVGVLRWSYSSTDESMVPLTLNCWPEEEGQGKMNISIEYQMNGQNRELHDVNISIPLGTAEPPQVAAVDGTFRHDPREQRLVWHMDLVDSSNASGALEFVVAGRDAGAFFPIIVSFASQMLYADVAVSAVTGLENAAPVPYSLSKSLTPDSY 553
            MVVLS ++C++ GKAL+SRQFVEMSR+R+EGL AAFPKL+  G  KQHTF+ET++VRYVYQP+E NL+LLL+T K SNIVEDL TLRLL+K+VP++AGG  E  + D  F+L+FAFDEVLT GGY+E  +L  I+TN+ MDSHEE++A  +++++                                                      G GG XXXXXXXXXX          S     P     N            +  AP  IA  G+KLG                                         + + PAP        P+ + +EEK+   + R+GAVD+ EVKG+LT+TA T+A   + V +        +P   NF THPK++K+ Y++    +     KGFPV RPVG+LRWSY   D  + PLT+NCWPE+EG G + ++IE ++   +  LHDVNI +PLGT +PP++  +DG ++HD R   + WH D +DSSN +G+LEF + G D  AFFP+ V F S+ L   + V ++T + N  P+P+ L+KSL+PD+Y
Sbjct:    1 MVVLSASVCSQQGKALVSRQFVEMSRLRVEGLFAAFPKLV--GHAKQHTFVETDSVRYVYQPLENNLYLLLVTTKTSNIVEDLGTLRLLAKVVPDIAGGFQEHAIQDHAFDLIFAFDEVLTAGGYKEEATLNSIRTNLVMDSHEERIADSMREAQ------------------------EAEARKRMMDQAKKIQEQKMHQTKQNFLHGGTGGXXXXXXXXXXXXXXXXXXXPFSQQPQQPVMHQHNDPYAHLYQQQPAVAEAPKVIAKSGLKLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFDISAPAPKQVAAPSTPLSVSIEEKVTVTMNREGAVDSGEVKGTLTVTANTDAGTMALVTVNRAQ----LPAEFNFATHPKIDKKVYETQNGALSLKGGKGFPVNRPVGILRWSYQGDD--VAPLTINCWPEDEGTGSIVVNIEMELTRPDLVLHDVNILLPLGTTDPPRIENIDGQYKHDARAGMMCWHFDQIDSSNGTGSLEFSIPGHDVEAFFPVQVGFRSETLMCPLQVMSITNMSNGTPIPHQLTKSLSPDTY 541          
BLAST of NO09G00460 vs. NCBI_GenBank
Match: XP_024581701.1 (coatomer subunit [Plasmopara halstedii] >CEG45332.1 coatomer subunit [Plasmopara halstedii])

HSP 1 Score: 380.6 bits (976), Expect = 8.500e-102
Identity = 244/573 (42.58%), Postives = 329/573 (57.42%), Query Frame = 0
Query:    1 MVVLSGAICTKNGKALLSRQFVEMSRIRIEGLLAAFPKLLGSGEEKQHTFIETETVRYVYQPIENLFLLLITNKASNIVEDLETLRLLSKIVPEVAGGVSEERVIDKCFELVFAFDEVLTTGGYRESVSLQQIKTNMEMDSHEEKLALMIKQSKMDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGVGG----------FXXXXXXXXXXSTGVSSSSYMPGTVDSNSASILETAPTKIASK--GMKLGA---------PSKASTMLDSLVQEDNLSHIATTTAIAPTSTRGGAGGEAAVPAPVIQHQPIQLVVEEKIIAHLTRDGAVDAFEVKGSLTLTATTEAAARSKVVLGEGAGGGIVPVGLNFQTHPKVNKQEYDSSKVLVLKDTNKGFPVGRPVGVLRWSYSSTDESMVPLTLNCWPEEEGQGKMNISIEYQMNGQNRELHDVNISIPLGTAEPPQVAAVDGTFRHDPREQRLVWHMDLVDSSNASGALEFVVAGRDAGAFFPIIVSFASQMLYADVAVSAVTGLENAAPVPYSLSKSLTPDSY 553
            MVVLS ++ T+NGK L++RQFVE++RIR+EGLLAAFPKLL SG  ++HTFI+TE+VRYVYQP+EN F+L+ITNK SNIVEDL  ++LL+K+VP++   +SE  + DK FELVF FDE++T GG+ E++++ QI+ NMEM+SHEEKL  MI +SK                                                    R G+GG           XXXXXXXXXX                       + P  + SK  GMKLG               + +D++  ED L  I   +A+  T  +     E AV    + H PI  VVEEKI   +TRDGA++  EVKGS+ ++    +A   ++ L  G   GI     +FQTHPKV+K+ YD   VL L+D +K FP  R V  LRWS  + DESM+PL + CWPEEEG GKMN+S+EY ++ ++  L +VNI IPLG  + P VA VDG ++H+  E  L+WH D + S+N SG LEF + G    AFFPI VSF S+ +Y+DV V AV  +E+ + + +   K L+ DSY
Sbjct:    1 MVVLSASLLTRNGKVLVARQFVEITRIRLEGLLAAFPKLLSSG-TREHTFIDTESVRYVYQPLENFFVLIITNKTSNIVEDLHIIQLLAKLVPDICAPLSETSIRDKQFELVFGFDELVTAGGHSENINVSQIRMNMEMESHEEKLHNMILESK--------------------------RAAAKDDMKRHTARIKEEQRERARLERAGMGGSGSGLHSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSRPAPVVSKGAGMKLGTXXXXXXXXXXXXGKSFMDAMAAEDGLKEIPPMSAVVETVQK----PEIAV---AVSHDPIGAVVEEKITVVITRDGALEQLEVKGSMYVSVNDPSAGCCRLKLRTGEIEGI-----SFQTHPKVDKRLYDKDSVLALRDPSKPFPTSR-VAFLRWSLKTQDESMLPLNITCWPEEEGDGKMNVSVEYSLD-RDMVLDNVNIIIPLGGHDAPSVANVDGQYQHNSAEGSLLWHHDQISSANNSGTLEFTIRGNHLDAFFPISVSFFSRSVYSDVQVEAVEKVEDGSSIAFGFEKLLSTDSY 532          
BLAST of NO09G00460 vs. NCBI_GenBank
Match: XP_002287438.1 (coatomer protein subunit delta [Thalassiosira pseudonana CCMP1335] >EED94881.1 coatomer protein subunit delta [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 376.7 bits (966), Expect = 1.200e-100
Identity = 216/561 (38.50%), Postives = 316/561 (56.33%), Query Frame = 0
Query:    1 MVVLSGAICTKNG-KALLSRQFVEMSRIRIEGLLAAFPKLLGSGEEKQHTFIETETVRYVYQPIEN-LFLLLITNKASNIVEDLETLRLLSKIVPEVAGGVSEERVIDKCFELVFAFDEVLTTGGYRESVSLQQIKTNMEMDSHEEKLALMIKQSKMDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGVGGFXXXXXXXXXXSTGVSSSSYMPGTVDSNSASILETAPTKIASKGMKLGAPSKASTMLDSLVQEDNLSHIATTTAIA-------PTSTRGGAGGEAAVPAPVIQHQPIQLVVEEKIIAHLTRDGAVDAFEVKGSLTLTATTEAAARSKVVLGEGAGGGIVPVGLNFQTHPKVNKQEYDSSKVLVLKDTNKGFPVGRPVGVLRWSYSSTDESMVPLTLNCWPEEEGQGKMNISIEYQMNGQNRELHDVNISIPLGTAEPPQVAAVDGTFRHDPREQRLVWHMDLVDSSNASGALEFVVAGRDAGAFFPIIVSFASQMLYADVAVSAVTGLENAAPVPYSLSKSLTPDSY 553
            MVVLS +I +  G K L+SRQFVEM+R+R+EGLLAAFPKL+  G  KQHTF+ET+ VRYVYQP+EN ++LLLIT KASNIVEDL TLRLL+K+VP+V G V+E  + +  FE++FAFDEVLTTGGY+E +S   I+TN+EM SHEE++ALM+K+SK D                                                  RD +                 S + Y         +S+ E    K+ +KGMKLG    +                              P     G                  +VVEEK+   +TR+G +++ EVKG++T TA TEA + + V + +         G +F THPKV K++Y+ + +L LK   KGFP+ RPVG+LRW+YS  D +  P T+NCWPE+ G G + +++E+++   +  + DVNI +PLGT +PP + ++DG F+HDP    + WH D++D++N+SG+LEF +AG D   FFP+ ++F+SQ L   + ++++T  ++ AP+P +++  + P+SY
Sbjct:    1 MVVLSASILSNRGSKPLVSRQFVEMNRLRVEGLLAAFPKLM--GHSKQHTFVETDAVRYVYQPMENGMYLLLITTKASNIVEDLGTLRLLAKVVPDVTGSVTEHSINEHAFEIIFAFDEVLTTGGYKEDISPSTIRTNLEMHSHEEEMALMLKKSKED-----------------------------AAKEQMQAQAKAIKDRQMAALRDNL------------MRQYQSDNPY----AHLGKSSVPEPDAPKVVAKGMKLGGVGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPFGLGLGXXXXXXXXXXXXXXXXATIVVEEKMTVQMTREGGIESSEVKGTITYTANTEAGSMANVAVNKAIYSAKCGNGWSFATHPKVEKKDYEQNGILSLKG-GKGFPLNRPVGILRWNYSGEDSA--PFTVNCWPEDAGSGTITVNMEFELQRMDAVITDVNILLPLGTTDPPAIESIDGQFKHDPNTGMMCWHQDVIDANNSSGSLEFSIAGSDEDVFFPVQIAFSSQSLMCPIEITSLTNAQSGAPIPNNMTVRVVPESY 511          
BLAST of NO09G00460 vs. NCBI_GenBank
Match: CCA14981.1 (coatomer subunit delta putative [Albugo laibachii Nc14])

HSP 1 Score: 372.1 bits (954), Expect = 3.000e-99
Identity = 221/555 (39.82%), Postives = 320/555 (57.66%), Query Frame = 0
Query:    1 MVVLSGAICTKNGKALLSRQFVEMSRIRIEGLLAAFPKLLGSGEEKQHTFIETETVRYVYQPIENLFLLLITNKASNIVEDLETLRLLSKIVPEVAGGVSEERVIDKCFELVFAFDEVLTTGGYRESVSLQQIKTNMEMDSHEEKLALMIKQSKMDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGVGGFXXXXXXXXXXSTGVSSSSYMPGTVDSNSASILETAPTKIASKGMKLGAPSKASTMLDSLVQEDNLSHIATTTAIAPTSTRGGAGGEAAVPAP--VIQHQPIQLVVEEKIIAHLTRDGAVDAFEVKGSLTLTATTEAAARSKVVLGEGAGGGIVPVGLNFQTHPKVNKQEYDSSKVLVLKDTNKGFPVGRPVGVLRWSYSSTDESMVPLTLNCWPEEEGQGKMNISIEYQMNGQNRELHDVNISIPLGTAEPPQVAAVDGTFRHDPREQRLVWHMDLVDSSNASGALEFVVAGRDAGAFFPIIVSFASQMLYADVAVSAV-TGLENAAPVPYSLSKSLTPDSY 553
            MVVLS A+ T+NGK L++RQFVE++RIRIEGLL AFPKLL +G +++HTFI+TE+VRYVYQP+EN F+LLITNK SNI+EDL T+++L+K++P++ G +SE  V +K FELVF FDE+++ GG+ E+++LQQI+ NMEM+SHEEKL  MI +SK                                                    R G+                  SS+Y   +  S   S    A   + S+ ++    ++  T   SL +             AP           AVP P  V+   P+ +VVEEKI   LTR+G ++  E+KGSL +T     + R ++ L       + P  +  QTHPKV+K+ +D   +L LKD++K FP  R VGVLRW + + DES  PL + CWPEEE  GK+N+S+EY M+    +L +V+I IPLG++E PQ+A +DG +RH P +  L+WH+D ++SSN+SG LEF + G +   FFP+ +SF S+ +Y DV V AV    ++++ + +   K L+ +SY
Sbjct:    1 MVVLSAALLTRNGKVLVARQFVEITRIRIEGLLTAFPKLLSTG-QREHTFIDTESVRYVYQPLENYFVLLITNKTSNIMEDLHTIQILAKLIPDICGSLSESAVREKQFELVFGFDELISAGGHSENITLQQIRINMEMESHEEKLQNMILESK--------------------------RAAAKDDMKRHTIRIKEEQRERARLERAGL------------------SSAYNQNSFGSGFGSDSPRATGGMGSREVEYSEITRYETWRISLEK---------AVPTAPVEA-------VAVPQPQVVVSKDPVGVVVEEKIAVQLTREGQLEQLEIKGSLFVTVNDPVSGRCRLRL-----RALPPNEIALQTHPKVDKKLFDQDGILGLKDSSKPFPSTR-VGVLRWGFKTQDESYSPLNITCWPEEESGGKINVSMEYSMDRSEMKLENVDILIPLGSSEMPQIAHIDGQYRHKPSDGALLWHLDCIESSNSSGTLEFSIHGSNMDGFFPVSISFFSRNVYCDVQVEAVFLAEDHSSNIAFGFDKLLSTESY 488          
BLAST of NO09G00460 vs. NCBI_GenBank
Match: GAX72921.1 (hypothetical protein CEUSTIGMA_g376.t1 [Chlamydomonas eustigma])

HSP 1 Score: 372.1 bits (954), Expect = 3.000e-99
Identity = 229/558 (41.04%), Postives = 325/558 (58.24%), Query Frame = 0
Query:    1 MVVLSGAICTKNGKALLSRQFVEMSRIRIEGLLAAFPKLLGSGEEKQHTFIETETVRYVYQPIENLFLLLITNKASNIVEDLETLRLLSKIVPEVAGGVSEERVIDKCFELVFAFDEVLTTGGYRESVSLQQIKTNMEMDSHEEKLALMIKQSKMDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGVGGFXXXXXXXXXXSTGVSS---SSYMPGTVDSNSASILETAPTKIASKGMKLGAPSKASTMLDSLVQEDNLSHIATTTAIAPTSTRGGAGGEAAVPAPVIQHQPIQLVVEEKIIAHLTRDGAVDAFEVKGSLTLTATTEAAARSKVVLGEGAGGGIVPVGLNFQTHPKVNKQEYDSSKVLVLKDTNKGFPVGRPVGVLRWSYSSTDESMVPLTLNCWPEEEGQGKMNISIEYQMNGQNRELHDVNISIPL-GTAEPPQVAAVDGTFRHDPREQRLVWHMDLVDSSNASGALEFVVAGRDAGAFFPIIVSFASQMLYADVAVSAVTGLENAAPVPYSLSKSLTPDSYIV 555
            MVVL+ ++ +K GK L+SRQ+++MSRIRIEGLLAAFPKL+G+G  KQHT++ETE VRYVYQP+E L+LLLITNK SNI+EDL+TLRLLSKIVPE A    E+ +++  FELV AFDEV++  GY+E++S+ Q+K N EM+SHEEKL  MI QSK++                                                  + G G            S G S+   + Y+    +  SA I + A +K  SKGM+LG   K + +L+SL +E     +    A         AGG AA  A ++   P+ L+++EK+   L R G  +  E+ G+++LT  +E+ A  KV +  G+          F+THP ++K +Y +S +L LKD  K FPVG  +G+L+W   S D S+VP+T+NCWP   G G+  ++IEY+ +  + +L +V + IPL G++  P V  VDG +R D ++  +VW +DL+D SN +G++EFVV+  DA +FFPI VSF+S  +Y DVAV +VT       V YS  K L    YIV
Sbjct:    1 MVVLAASVISKTGKPLVSRQYMDMSRIRIEGLLAAFPKLIGTG--KQHTYVETENVRYVYQPMEGLYLLLITNKQSNILEDLDTLRLLSKIVPEFAMSYDEDDIVNLAFELVAAFDEVISL-GYKENISVMQVKQNCEMESHEEKLHKMIIQSKIN----------------------------DTKDLMKKKAQEIDKNKIEQKGKSGYGMAASMSSFSSGKSMGASAPEDTKYV--RPEPVSAPISKMATSKGPSKGMQLGKGKKGNDILESLAKEGEAVELIVRPA--------AAGGLAA--AAILSSDPVTLIIDEKLSVALDRQGGCENLEIIGTMSLTVNSESDAFIKVAISSGSN-----KNYQFKTHPNIDKAQYSNSNLLGLKDPTKPFPVGSELGILKWRMQSKDSSLVPITINCWPSVSG-GQTYVNIEYE-STSSFDLQNVAVVIPLPGSSSAPSVNQVDGDWRFDSKQGAMVWTIDLIDDSNRTGSMEFVVSASDAESFFPISVSFSSSKIYCDVAVDSVTYTMKEGSVKYSFKKFLMAGEYIV 508          
BLAST of NO09G00460 vs. NCBI_GenBank
Match: KUF76536.1 (Coatomer subunit delta [Phytophthora nicotianae])

HSP 1 Score: 371.3 bits (952), Expect = 5.200e-99
Identity = 235/552 (42.57%), Postives = 313/552 (56.70%), Query Frame = 0
Query:    1 MVVLSGAICTKNGKALLSRQFVEMSRIRIEGLLAAFPKLLGSGEEKQHTFIETETVRYVYQPIENLFLLLITNKASNIVEDLETLRLLSKIVPEVAGGVSEERVIDKCFELVFAFDEVLTTGGYRESVSLQQIKTNMEMDSHEEKLALMIKQSKMDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDGVGGFXXXXXXXXXXSTGVSSSSYMPGTVDSNSASILETAPTKIASKGMKLGAPSKASTMLDSLVQEDNLSHIATTTAIAPTSTRGGAGGEAAVPAPVIQHQPIQLVVEEKIIAHLTRDGAVDAFEVKGSLTLTATTEAAARSKVVLGEGAGGGIVPVGLNFQTHPKVNKQEYDSSKVLVLKDTNKGFPVGRPVGVLRWSYSSTDESMVPLTLNCWPEEEGQGKMNISIEYQMNGQNRELHDVNISIPLGTAEPPQVAAVDGTFRHDPREQRLVWHMDLVDSSNASGALEFVVAGRDAGAFFPIIVSFASQMLYADVAVSAVTGLENAAPVPYSLSKSLTPDSY 553
            MVVLS A+ T+NGK L++RQFVE++RIR+EGLLAAFPKLL SG  ++HTFI+TE+VRYVYQP+E+ F+L+ITNK SNIVEDL T+++LSK+VP++   +SE  + DK FELVF FDE++T GG+ E++++ QI+ NMEM+SHEEKL  MI +SK                                                    R      XXXXXXXXXX                                                   ED L  I   +A   T  +     E AV    + H PI  VVEEKI   LTRDGA++  EVKGS+ ++    +A   ++ L  G   GI     +FQTHPKV+K+ YDS  VL L+D  K FP  R V  LRWS  + DESM+PL + CWPEEEG GKMN+S+EY ++ ++  L +VN+ IPLG ++ P VA VDG ++H+  E  L+WH D + S+N SG LEF + G +  AFFPI VSF S+ +Y+DV V AV  +E+ +P+ +   K L+ DSY
Sbjct:    1 MVVLSAALLTRNGKVLVARQFVEITRIRLEGLLAAFPKLLSSG-SREHTFIDTESVRYVYQPLESFFVLIITNKTSNIVEDLHTIQVLSKLVPDICAPLSEASIRDKQFELVFGFDELITAGGHSENINVSQIRVNMEMESHEEKLHNMILESKRAAAKDDMKRHTARIKEEQRERARLERAGMGDSGFGSQNSFGSSFSNAFKSPR----SXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEDGLKEIPPMSAAVETVQK----PEVAV---AVSHDPIGAVVEEKITVVLTRDGALEQLEVKGSMYVSVNDPSAGCCRLKLRTGGVEGI-----SFQTHPKVDKKLYDSDSVLALRDPTKPFPTSR-VAFLRWSLKTQDESMLPLNITCWPEEEGNGKMNVSVEYSLD-RDMVLDNVNVVIPLGGSDAPSVANVDGQYQHNSAEGSLLWHQDQISSANNSGTLEFSIRGNNMDAFFPISVSFFSRSVYSDVQVEAVQKIEDGSPIAFGFEKLLSTDSY 533          
The following BLAST results are available for this feature:
BLAST of NO09G00460 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_012196775.17.000e-10444.48hypothetical protein SPRG_02798 [Saprolegnia paras... [more]
XP_002184276.11.600e-10340.32predicted protein [Phaeodactylum tricornutum CCAP ... [more]
XP_008604329.13.500e-10348.04hypothetical protein SDRG_00623 [Saprolegnia dicli... [more]
OQS01160.11.300e-10241.91coatomer subunit delta [Achlya hypogyna][more]
GAX28356.12.900e-10240.31hypothetical protein FisN_4Hh018 [Fistulifera sola... [more]
XP_024581701.18.500e-10242.58coatomer subunit [Plasmopara halstedii] >CEG45332.... [more]
XP_002287438.11.200e-10038.50coatomer protein subunit delta [Thalassiosira pseu... [more]
CCA14981.13.000e-9939.82coatomer subunit delta putative [Albugo laibachii ... [more]
GAX72921.13.000e-9941.04hypothetical protein CEUSTIGMA_g376.t1 [Chlamydomo... [more]
KUF76536.15.200e-9942.57Coatomer subunit delta [Phytophthora nicotianae][more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL119nonsL119Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR021ncniR021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR127ngnoR127Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010510NSK010510Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO09G00460.1NO09G00460.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|528173gene_4513Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO09G00460.1NO09G00460.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO09G00460 ID=NO09G00460|Name=NO09G00460|organism=Nannochloropsis oceanica|type=gene|length=1804bp
ATGgtatgtatcacaatttagaggcggacgagggctactgtttatcgggt
ccgtttctgtacgcctttgaagcgttgcaatagcattcccgtcattgacc
tcgatgcttcggataacactccttcccctcccctcacagGTGGTGCTTTC
CGGTGCAATCTGCACCAAAAATGGCAAGGCACTGCTTTCCCGACAATTTG
TGGAGATGAGCCGCATCCGCATCGAGGGATTGTTGGCCGCCTTCCCCAAG
CTGCTGGGCTCGGGGGAAGAGAAGCAGCACACTTTTATCGAGACCGAGAC
TGTCCGCTACGTCTACCAGCCTATCGAAAACCTTTTCCTGCTCCTAATAA
CCAACAAGGCCTCCAACATCGTCGAAGACTTAGAGACCCTCCGTCTGTTG
TCCAAGATTGTCCCCGAGGTGGCGGGGGGCGTATCCGAAGAACGGGTAAT
CGACAAGTGCTTCGAGCTCGTCTTCGCCTTTGACGAGGTCCTAACGACGG
GCGGATACCGCGAAAGCGTATCCCTGCAACAAATTAAGACTAACATGGAG
ATGGACTCGCATGAGGAAAAACTTGCATTGATGATCAAGCAGAGCAAGAT
GGACTCAGCCAAGGACCAGGCCGCTCGTCAGGCCAAGGCCATCCGGGAAC
GTCAACGCGAGCTGGCCCGTGACCGGCTGGGGGGGGCCCGAGGTGGCGCG
GGGGGGGCTTACCAGGGCATTGGCGGCGGCGATGGTGGTGGTGATTACAT
GGGTAGGGACGGCGTAGGAGGGTTTGGAGGGGTGCCGGGGGGAGGGTTCG
GGGCTTCGACCGGTGTGTCGTCGTCCTCGTATATGCCCGGCACGGTGGAC
AGCAACTCGGCGTCCATATTGGAAACGGCCCCGACAAAGATTGCGAGCAA
GGGGATGAAGCTTGGGGCGCCGAGCAAGGCCTCGACGATGCTTGACTCGC
TTGTACAGGAGGATAATTTGAGTCATATTGCTACTACCACTGCGATTGCC
CCCACTAGCACAAGGGGAGGGGCAGGTGGGGAGGCTGCGGTTCCAGCCCC
TGTCATCCAGCACCAGCCCATTCAGTTGGTAGTGGAAGAGAAGATCATCG
CGCACCTGACGCGGGATGGGGCGGTGGATGCCTTTGAAGTTAAGGGGTCC
TTGACGCTAACAGCGACCACCGAGGCGGCAGCTCGGTCGAAGGTGGTGCT
CGGGGAGGGCGCGGGGGGAGGCATTGTGCCGGTGGGTTTGAATTTTCAGA
CCCACCCGAAGGTAAATAAGCAGGAGTATGACTCTAGCAAGGTTTTGGTG
CTGAAAGATACGAATAAGGGCTTTCCTGTCGGGCGCCCTGTTGGGGTCCT
CCGGTGGAGCTACTCGTCCACAGATGAGAGCATGGTGCCACTTACGCTCA
ACTGCTGGCCAGAAGAGGAAGGGCAGGGGAAGATGAACATTAGCATTGAA
TATCAGATGAATGGTCAGAACCGGGAATTGCACGATGTGAATATTTCGAT
CCCCTTGGGGACGGCCGAGCCTCCGCAAGTGGCGGCGGTGGACGGTACTT
TCAGGCATGACCCGCGGGAGCAGCGGCTGGTCTGGCACATGGATTTGGTC
GATTCTTCCAACGCGAGTGGGGCGTTGGAATTTGTAGTGGCGGGGAGGGA
TGCAGGGGCTTTCTTTCCGATCATCGTCTCGTTTGCGAGTCAAATGCTGT
ATGCCGATGTGGCGGTGTCGGCAGTTACCGGATTGGAGAATGCCGCCCCA
GTTCCCTACAGTCTGTCCAAGAGCCTGACGCCTGATTCGTACATCGTGGG
CTAG
back to top

protein sequence of NO09G00460.1

>NO09G00460.1-protein ID=NO09G00460.1-protein|Name=NO09G00460.1|organism=Nannochloropsis oceanica|type=polypeptide|length=556bp
MVVLSGAICTKNGKALLSRQFVEMSRIRIEGLLAAFPKLLGSGEEKQHTF
IETETVRYVYQPIENLFLLLITNKASNIVEDLETLRLLSKIVPEVAGGVS
EERVIDKCFELVFAFDEVLTTGGYRESVSLQQIKTNMEMDSHEEKLALMI
KQSKMDSAKDQAARQAKAIRERQRELARDRLGGARGGAGGAYQGIGGGDG
GGDYMGRDGVGGFGGVPGGGFGASTGVSSSSYMPGTVDSNSASILETAPT
KIASKGMKLGAPSKASTMLDSLVQEDNLSHIATTTAIAPTSTRGGAGGEA
AVPAPVIQHQPIQLVVEEKIIAHLTRDGAVDAFEVKGSLTLTATTEAAAR
SKVVLGEGAGGGIVPVGLNFQTHPKVNKQEYDSSKVLVLKDTNKGFPVGR
PVGVLRWSYSSTDESMVPLTLNCWPEEEGQGKMNISIEYQMNGQNRELHD
VNISIPLGTAEPPQVAAVDGTFRHDPREQRLVWHMDLVDSSNASGALEFV
VAGRDAGAFFPIIVSFASQMLYADVAVSAVTGLENAAPVPYSLSKSLTPD
SYIVG*
back to top
Synonyms
Publications