NO09G00460.1, NO09G00460.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G00460.1
Unique NameNO09G00460.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1668
Alignment locationchr9:196449..198252 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:196449..198252 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO09G00460.1 vs.
Match: CBJ25720.1 (Coatomer protein complex,delta sub-unit [Ectocarpus siliculosus])

HSP 1 Score: 551.6 bits (1420), Expect = 2.800e-153
Identity = 320/569 (56.24%), Postives = 409/569 (71.88%), Query Frame = 0
Query:    2 VVLSGAICTKNGKALLSRQFVEMSRIRIEGLLAAFPKLLGSGEEKQHTFIETETVRYVYQPIENLFLLLITNKASNIVEDLETLRLLSKIVPEVAGGVSEERVIDKCFELVFAFDEVLTTGGYRESVSLQQIKTNMEMDSHEEKLALMIKQSKMDSAKDQAARQAKAIRERQRELARDRLGGARGGAGGAYQGIGGGDGG------------GDY-MGRDGVGGFGGVPGGGFGASTGVSSSSYMPGTVDSNSASILETAPTKIASKGMKLGAPSKASTMLDSLVQEDNLSHIATTTAIAPTSTRGGAGG-EAAVPAPVI--QHQPIQLVVEEKIIAHLTRDGAVDAFEVKGSLTLTATTEAAARSKVVLGEGAGGGIVPVGLNFQTHPKVNKQEYDSSKVLVLKDTNKGFPVGRPVGVLRWSYSSTDESMVPLTLNCWPEEEGQGKMNISIEYQMNGQNRELHDVNISIPLGTAEPPQVAAVDGTFRHDPREQRLVWHMDLVDSSNASGALEFVVAGRDAGAFFPIIVSFASQMLYADVAVSAVTGLENAAPVPYSLSKSLTPDSYIV 555
            VVLS +I T+NGKALL+RQFV+MSRIRIEGLLAAFPKL+G+G  KQHTFIETETVRYVYQPIENLFLLL+TNKASNIVEDLETLR+LSK+VP+VAGGV+E++V+ K FELVFAFDEV+TTGG++E+++LQQIKTNMEMDSHEE+L  MI+ SK ++AK++A R+AK +RE+ +E         RG   G   G+GGG GG             DY +   G  GFGG  GGG GAS G+S  +  P       AS    A T+++++GMKLG  SK+  MLDSL++ED+L  I       P++++  AGG EAAVPA V+     P+ L VEE++   LTR+G +++ EVKG+L+LTA ++ A + KVVL      G       FQTHPKVNK  YDS+K L  KD  KGFPV RPVGVLRWS ++TDES +PLT+NCWPE EG G+MN+S+EY++  +  ELHDV ISIPLG++  P++AA+DG+ RH  +E  L+W MDL+D SN +G+LEF +A RDA AFFPI V+FAS  L+ DV V+ VT  E  +P+ Y  + SLT DSY V
Sbjct:   16 VVLSASITTRNGKALLARQFVDMSRIRIEGLLAAFPKLMGTGN-KQHTFIETETVRYVYQPIENLFLLLVTNKASNIVEDLETLRMLSKVVPDVAGGVTEDKVMSKSFELVFAFDEVITTGGHKENITLQQIKTNMEMDSHEERLHTMIQDSKREAAKEEADRRAKELREKAKEAQ------LRGSGMGGMSGMGGGGGGMGMSGSSMYTEASDYGVASTGGTGFGG-GGGGSGASLGLSVPAAGP-------ASSTPVADTRVSTQGMKLGGASKSKNMLDSLIKEDHLVSI-------PSASKASAGGTEAAVPAAVVAASVHPVSLSVEERLSCQLTREGTLESMEVKGTLSLTANSDGANKCKVVLASTDPSGT----FTFQTHPKVNKGMYDSAKTLASKDQAKGFPVARPVGVLRWSLNTTDESQMPLTINCWPEPEGGGQMNVSMEYEL-VRPMELHDVRISIPLGSSAVPEIAAIDGSHRHLTQEGTLLWTMDLLDQSNRTGSLEFNIASRDAEAFFPITVTFASNQLFCDVQVAGVTNTETESPIQYGYTASLTADSYTV 557          
The following BLAST results are available for this feature:
BLAST of NO09G00460.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBJ25720.12.800e-15356.24Coatomer protein complex,delta sub-unit [Ectocarpu... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G00460NO09G00460Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G00460.1NO09G00460.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G00460.1.cds1NO09G00460.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G00460.1.cds2NO09G00460.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G00460.1 ID=NO09G00460.1|Name=NO09G00460.1|organism=Nannochloropsis oceanica|type=mRNA|length=1668bp
ATGGTGGTGCTTTCCGGTGCAATCTGCACCAAAAATGGCAAGGCACTGCT
TTCCCGACAATTTGTGGAGATGAGCCGCATCCGCATCGAGGGATTGTTGG
CCGCCTTCCCCAAGCTGCTGGGCTCGGGGGAAGAGAAGCAGCACACTTTT
ATCGAGACCGAGACTGTCCGCTACGTCTACCAGCCTATCGAAAACCTTTT
CCTGCTCCTAATAACCAACAAGGCCTCCAACATCGTCGAAGACTTAGAGA
CCCTCCGTCTGTTGTCCAAGATTGTCCCCGAGGTGGCGGGGGGCGTATCC
GAAGAACGGGTAATCGACAAGTGCTTCGAGCTCGTCTTCGCCTTTGACGA
GGTCCTAACGACGGGCGGATACCGCGAAAGCGTATCCCTGCAACAAATTA
AGACTAACATGGAGATGGACTCGCATGAGGAAAAACTTGCATTGATGATC
AAGCAGAGCAAGATGGACTCAGCCAAGGACCAGGCCGCTCGTCAGGCCAA
GGCCATCCGGGAACGTCAACGCGAGCTGGCCCGTGACCGGCTGGGGGGGG
CCCGAGGTGGCGCGGGGGGGGCTTACCAGGGCATTGGCGGCGGCGATGGT
GGTGGTGATTACATGGGTAGGGACGGCGTAGGAGGGTTTGGAGGGGTGCC
GGGGGGAGGGTTCGGGGCTTCGACCGGTGTGTCGTCGTCCTCGTATATGC
CCGGCACGGTGGACAGCAACTCGGCGTCCATATTGGAAACGGCCCCGACA
AAGATTGCGAGCAAGGGGATGAAGCTTGGGGCGCCGAGCAAGGCCTCGAC
GATGCTTGACTCGCTTGTACAGGAGGATAATTTGAGTCATATTGCTACTA
CCACTGCGATTGCCCCCACTAGCACAAGGGGAGGGGCAGGTGGGGAGGCT
GCGGTTCCAGCCCCTGTCATCCAGCACCAGCCCATTCAGTTGGTAGTGGA
AGAGAAGATCATCGCGCACCTGACGCGGGATGGGGCGGTGGATGCCTTTG
AAGTTAAGGGGTCCTTGACGCTAACAGCGACCACCGAGGCGGCAGCTCGG
TCGAAGGTGGTGCTCGGGGAGGGCGCGGGGGGAGGCATTGTGCCGGTGGG
TTTGAATTTTCAGACCCACCCGAAGGTAAATAAGCAGGAGTATGACTCTA
GCAAGGTTTTGGTGCTGAAAGATACGAATAAGGGCTTTCCTGTCGGGCGC
CCTGTTGGGGTCCTCCGGTGGAGCTACTCGTCCACAGATGAGAGCATGGT
GCCACTTACGCTCAACTGCTGGCCAGAAGAGGAAGGGCAGGGGAAGATGA
ACATTAGCATTGAATATCAGATGAATGGTCAGAACCGGGAATTGCACGAT
GTGAATATTTCGATCCCCTTGGGGACGGCCGAGCCTCCGCAAGTGGCGGC
GGTGGACGGTACTTTCAGGCATGACCCGCGGGAGCAGCGGCTGGTCTGGC
ACATGGATTTGGTCGATTCTTCCAACGCGAGTGGGGCGTTGGAATTTGTA
GTGGCGGGGAGGGATGCAGGGGCTTTCTTTCCGATCATCGTCTCGTTTGC
GAGTCAAATGCTGTATGCCGATGTGGCGGTGTCGGCAGTTACCGGATTGG
AGAATGCCGCCCCAGTTCCCTACAGTCTGTCCAAGAGCCTGACGCCTGAT
TCGTACATCGTGGGCTAG
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protein sequence of NO09G00460.1

>NO09G00460.1-protein ID=NO09G00460.1-protein|Name=NO09G00460.1|organism=Nannochloropsis oceanica|type=polypeptide|length=556bp
MVVLSGAICTKNGKALLSRQFVEMSRIRIEGLLAAFPKLLGSGEEKQHTF
IETETVRYVYQPIENLFLLLITNKASNIVEDLETLRLLSKIVPEVAGGVS
EERVIDKCFELVFAFDEVLTTGGYRESVSLQQIKTNMEMDSHEEKLALMI
KQSKMDSAKDQAARQAKAIRERQRELARDRLGGARGGAGGAYQGIGGGDG
GGDYMGRDGVGGFGGVPGGGFGASTGVSSSSYMPGTVDSNSASILETAPT
KIASKGMKLGAPSKASTMLDSLVQEDNLSHIATTTAIAPTSTRGGAGGEA
AVPAPVIQHQPIQLVVEEKIIAHLTRDGAVDAFEVKGSLTLTATTEAAAR
SKVVLGEGAGGGIVPVGLNFQTHPKVNKQEYDSSKVLVLKDTNKGFPVGR
PVGVLRWSYSSTDESMVPLTLNCWPEEEGQGKMNISIEYQMNGQNRELHD
VNISIPLGTAEPPQVAAVDGTFRHDPREQRLVWHMDLVDSSNASGALEFV
VAGRDAGAFFPIIVSFASQMLYADVAVSAVTGLENAAPVPYSLSKSLTPD
SYIVG*
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mRNA from alignment at chr9:196449..198252-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G00460.1 ID=NO09G00460.1|Name=NO09G00460.1|organism=Nannochloropsis oceanica|type=mRNA|length=1804bp|location=Sequence derived from alignment at chr9:196449..198252- (Nannochloropsis oceanica)
ATGGTATGTATCACAATTTAGAGGCGGACGAGGGCTACTGTTTATCGGGT CCGTTTCTGTACGCCTTTGAAGCGTTGCAATAGCATTCCCGTCATTGACC TCGATGCTTCGGATAACACTCCTTCCCCTCCCCTCACAGGTGGTGCTTTC CGGTGCAATCTGCACCAAAAATGGCAAGGCACTGCTTTCCCGACAATTTG TGGAGATGAGCCGCATCCGCATCGAGGGATTGTTGGCCGCCTTCCCCAAG CTGCTGGGCTCGGGGGAAGAGAAGCAGCACACTTTTATCGAGACCGAGAC TGTCCGCTACGTCTACCAGCCTATCGAAAACCTTTTCCTGCTCCTAATAA CCAACAAGGCCTCCAACATCGTCGAAGACTTAGAGACCCTCCGTCTGTTG TCCAAGATTGTCCCCGAGGTGGCGGGGGGCGTATCCGAAGAACGGGTAAT CGACAAGTGCTTCGAGCTCGTCTTCGCCTTTGACGAGGTCCTAACGACGG GCGGATACCGCGAAAGCGTATCCCTGCAACAAATTAAGACTAACATGGAG ATGGACTCGCATGAGGAAAAACTTGCATTGATGATCAAGCAGAGCAAGAT GGACTCAGCCAAGGACCAGGCCGCTCGTCAGGCCAAGGCCATCCGGGAAC GTCAACGCGAGCTGGCCCGTGACCGGCTGGGGGGGGCCCGAGGTGGCGCG GGGGGGGCTTACCAGGGCATTGGCGGCGGCGATGGTGGTGGTGATTACAT GGGTAGGGACGGCGTAGGAGGGTTTGGAGGGGTGCCGGGGGGAGGGTTCG GGGCTTCGACCGGTGTGTCGTCGTCCTCGTATATGCCCGGCACGGTGGAC AGCAACTCGGCGTCCATATTGGAAACGGCCCCGACAAAGATTGCGAGCAA GGGGATGAAGCTTGGGGCGCCGAGCAAGGCCTCGACGATGCTTGACTCGC TTGTACAGGAGGATAATTTGAGTCATATTGCTACTACCACTGCGATTGCC CCCACTAGCACAAGGGGAGGGGCAGGTGGGGAGGCTGCGGTTCCAGCCCC TGTCATCCAGCACCAGCCCATTCAGTTGGTAGTGGAAGAGAAGATCATCG CGCACCTGACGCGGGATGGGGCGGTGGATGCCTTTGAAGTTAAGGGGTCC TTGACGCTAACAGCGACCACCGAGGCGGCAGCTCGGTCGAAGGTGGTGCT CGGGGAGGGCGCGGGGGGAGGCATTGTGCCGGTGGGTTTGAATTTTCAGA CCCACCCGAAGGTAAATAAGCAGGAGTATGACTCTAGCAAGGTTTTGGTG CTGAAAGATACGAATAAGGGCTTTCCTGTCGGGCGCCCTGTTGGGGTCCT CCGGTGGAGCTACTCGTCCACAGATGAGAGCATGGTGCCACTTACGCTCA ACTGCTGGCCAGAAGAGGAAGGGCAGGGGAAGATGAACATTAGCATTGAA TATCAGATGAATGGTCAGAACCGGGAATTGCACGATGTGAATATTTCGAT CCCCTTGGGGACGGCCGAGCCTCCGCAAGTGGCGGCGGTGGACGGTACTT TCAGGCATGACCCGCGGGAGCAGCGGCTGGTCTGGCACATGGATTTGGTC GATTCTTCCAACGCGAGTGGGGCGTTGGAATTTGTAGTGGCGGGGAGGGA TGCAGGGGCTTTCTTTCCGATCATCGTCTCGTTTGCGAGTCAAATGCTGT ATGCCGATGTGGCGGTGTCGGCAGTTACCGGATTGGAGAATGCCGCCCCA GTTCCCTACAGTCTGTCCAAGAGCCTGACGCCTGATTCGTACATCGTGGG CTAG
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Coding sequence (CDS) from alignment at chr9:196449..198252-

>NO09G00460.1 ID=NO09G00460.1|Name=NO09G00460.1|organism=Nannochloropsis oceanica|type=CDS|length=1668bp|location=Sequence derived from alignment at chr9:196449..198252- (Nannochloropsis oceanica)
ATGGTGGTGCTTTCCGGTGCAATCTGCACCAAAAATGGCAAGGCACTGCT
TTCCCGACAATTTGTGGAGATGAGCCGCATCCGCATCGAGGGATTGTTGG
CCGCCTTCCCCAAGCTGCTGGGCTCGGGGGAAGAGAAGCAGCACACTTTT
ATCGAGACCGAGACTGTCCGCTACGTCTACCAGCCTATCGAAAACCTTTT
CCTGCTCCTAATAACCAACAAGGCCTCCAACATCGTCGAAGACTTAGAGA
CCCTCCGTCTGTTGTCCAAGATTGTCCCCGAGGTGGCGGGGGGCGTATCC
GAAGAACGGGTAATCGACAAGTGCTTCGAGCTCGTCTTCGCCTTTGACGA
GGTCCTAACGACGGGCGGATACCGCGAAAGCGTATCCCTGCAACAAATTA
AGACTAACATGGAGATGGACTCGCATGAGGAAAAACTTGCATTGATGATC
AAGCAGAGCAAGATGGACTCAGCCAAGGACCAGGCCGCTCGTCAGGCCAA
GGCCATCCGGGAACGTCAACGCGAGCTGGCCCGTGACCGGCTGGGGGGGG
CCCGAGGTGGCGCGGGGGGGGCTTACCAGGGCATTGGCGGCGGCGATGGT
GGTGGTGATTACATGGGTAGGGACGGCGTAGGAGGGTTTGGAGGGGTGCC
GGGGGGAGGGTTCGGGGCTTCGACCGGTGTGTCGTCGTCCTCGTATATGC
CCGGCACGGTGGACAGCAACTCGGCGTCCATATTGGAAACGGCCCCGACA
AAGATTGCGAGCAAGGGGATGAAGCTTGGGGCGCCGAGCAAGGCCTCGAC
GATGCTTGACTCGCTTGTACAGGAGGATAATTTGAGTCATATTGCTACTA
CCACTGCGATTGCCCCCACTAGCACAAGGGGAGGGGCAGGTGGGGAGGCT
GCGGTTCCAGCCCCTGTCATCCAGCACCAGCCCATTCAGTTGGTAGTGGA
AGAGAAGATCATCGCGCACCTGACGCGGGATGGGGCGGTGGATGCCTTTG
AAGTTAAGGGGTCCTTGACGCTAACAGCGACCACCGAGGCGGCAGCTCGG
TCGAAGGTGGTGCTCGGGGAGGGCGCGGGGGGAGGCATTGTGCCGGTGGG
TTTGAATTTTCAGACCCACCCGAAGGTAAATAAGCAGGAGTATGACTCTA
GCAAGGTTTTGGTGCTGAAAGATACGAATAAGGGCTTTCCTGTCGGGCGC
CCTGTTGGGGTCCTCCGGTGGAGCTACTCGTCCACAGATGAGAGCATGGT
GCCACTTACGCTCAACTGCTGGCCAGAAGAGGAAGGGCAGGGGAAGATGA
ACATTAGCATTGAATATCAGATGAATGGTCAGAACCGGGAATTGCACGAT
GTGAATATTTCGATCCCCTTGGGGACGGCCGAGCCTCCGCAAGTGGCGGC
GGTGGACGGTACTTTCAGGCATGACCCGCGGGAGCAGCGGCTGGTCTGGC
ACATGGATTTGGTCGATTCTTCCAACGCGAGTGGGGCGTTGGAATTTGTA
GTGGCGGGGAGGGATGCAGGGGCTTTCTTTCCGATCATCGTCTCGTTTGC
GAGTCAAATGCTGTATGCCGATGTGGCGGTGTCGGCAGTTACCGGATTGG
AGAATGCCGCCCCAGTTCCCTACAGTCTGTCCAAGAGCCTGACGCCTGAT
TCGTACATCGTGGGCTAG
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Synonyms
Publications