NO09G00330, NO09G00330 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO09G00330
Unique Name	NO09G00330
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2578
Alignment location	chr9:161853..164430 -

Link to JBrowse

Properties


Property Name	Value
Description	UDP-glucuronic acid decarboxylase 1

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr9	genome	chr9:161853..164430 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003824	catalytic activity
GO:0050662	coenzyme binding
GO:0003824	catalytic activity

Vocabulary: **INTERPRO**
Term	Definition
IPR036291	NAD(P)-bd_dom_sf
IPR001509	Epimerase_deHydtase_N

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Homology

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BLAST of NO09G00330 vs. NCBI_GenBank
Match: XP_005855230.1 (UDP-glucuronate decarboxylase [Nannochloropsis gaditana CCMP526] >EKU21132.1 UDP-glucuronate decarboxylase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 630.6 bits (1625), Expect = 4.200e-177
Identity = 308/362 (85.08%), Postives = 323/362 (89.23%), Query Frame = 0

Query:  142 FPPSAVLSESQRMRVLVTGGAGFVGSHLVDRLMEEGHEVIVLDNMFTGRKKNVAHWIGHPNFMLIVHDVVEPIMLE-----------------YNPIKTIKTSTMGTLNMLGLAKRVRARMLLTSTSEVYGDPQIHPQPESYWGNVNPIGPRACYDEGKRVAETMMYAYHNQGKVDVRVARIFNTFGPRMHPNDGRVVSNFIIQALQGKDITIYGEGQQTRSFQYVEDLVTGLIKLMNSDYGLPCNLGNPEEYTVKAFALLVKELVTGSRSSISYMPATKDDPAKRKPDITVAREVLDWQPRVPVREGLSKTVAYFRAELEETGEIVPTGPDAARPKPCCTGGLSPSRQYEEHLHAETAEMA 487
            +PP+A LSE QR R+LVTGGAGFVGSHLVDRLM EGHEVIV+DNMFTGRKKNVAHWIGHP+FMLIVHDVVEPI+LE                 YNPIKTIKTSTMGTLNMLGLAKRVRARMLLTSTSEVYGDPQIHPQPESYWGNVNPIGPRACYDEGKRVAETMMYAYHNQ  VDVRVARIFNTFGPRMHPNDGRVVSNFIIQALQGKDITIYGEG QTRSFQYVEDLVTGL KLMNSDYGLP NLGNPEEYTVK FALLVKELV GS S+I +MPATKDDPAKRKPDI VA +VL WQPRVPVREGLSKTVAYFR+ELE+TGEIVPTGPDA RPKPCC+  LSPSR+YE+HL+AET   A
Sbjct:  151 YPPTATLSEGQRRRILVTGGAGFVGSHLVDRLMAEGHEVIVVDNMFTGRKKNVAHWIGHPHFMLIVHDVVEPILLEVDQIYHLACPASPPHYQYNPIKTIKTSTMGTLNMLGLAKRVRARMLLTSTSEVYGDPQIHPQPESYWGNVNPIGPRACYDEGKRVAETMMYAYHNQSSVDVRVARIFNTFGPRMHPNDGRVVSNFIIQALQGKDITIYGEGHQTRSFQYVEDLVTGLTKLMNSDYGLPVNLGNPEEYTVKDFALLVKELVVGSPSAIVHMPATKDDPAKRKPDIRVAMDVLGWQPRVPVREGLSKTVAYFRSELEDTGEIVPTGPDATRPKPCCSNVLSPSREYEDHLYAETMPAA 512

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BLAST of NO09G00330 vs. NCBI_GenBank
Match: CBJ48392.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 512.3 bits (1318), Expect = 1.700e-141
Identity = 253/376 (67.29%), Postives = 299/376 (79.52%), Query Frame = 0

Query:  109 LREVIQREVECQVSERVCSMNK------AQQAAGGRKNFFPPSAVLSESQRMRVLVTGGAGFVGSHLVDRLMEEGHEVIVLDNMFTGRKKNVAHWIGHPNFMLIVHDVVEPIMLE-----------------YNPIKTIKTSTMGTLNMLGLAKRVRARMLLTSTSEVYGDPQIHPQPESYWGNVNPIGPRACYDEGKRVAETMMYAYHNQGKVDVRVARIFNTFGPRMHPNDGRVVSNFIIQALQGKDITIYGEGQQTRSFQYVEDLVTGLIKLMNSDYGLPCNLGNPEEYTVKAFALLVKELVTGSRSSISYMPATKDDPAKRKPDITVAREVLDWQPRVPVREGLSKTVAYFRAELEETGEIVPTGPDAARPK 462
            ++E+++ EV+ +V ++V  +N       +++      N FPP+A LSE  RMRVLVTGGAGFVGSHLVD LM+ GH+VIVLDN FTGR+KNV HWIGHP+F LI HDVVEPI LE                 YNPIKTIKTST GTLNMLGLAKR  ARMLLTSTSEVYGDP+ HPQ E+YWGNVNPIGPRACYDEGKRVAETMMYAY NQG+++VRVARIFNTFGPRMHPNDGRVVSNFIIQA+QGKDITIYG+G QTRSFQYV+DLV GLI LMN++Y  P N+GNP+EYTVK FA L+K   T S S I +M  TKDDP KRKPDIT+A++ L W+P V V++GL +T+ YFR EL++TGEI+PTGPDA++P+
Sbjct:   99 VQEMVEVEVQRRVQQQVSLLNSEPHTLPSEERGPAVANNFPPTADLSEKDRMRVLVTGGAGFVGSHLVDALMKMGHDVIVLDNFFTGRQKNVQHWIGHPSFHLITHDVVEPIKLEVDQIYHLACPASPPHYQYNPIKTIKTSTQGTLNMLGLAKRTGARMLLTSTSEVYGDPEEHPQRETYWGNVNPIGPRACYDEGKRVAETMMYAYENQGEMEVRVARIFNTFGPRMHPNDGRVVSNFIIQAIQGKDITIYGDGSQTRSFQYVDDLVRGLIALMNNNYSGPVNIGNPDEYTVKDFAELIKS-STESTSKIIFMDGTKDDPNKRKPDITLAKKELGWEPTVAVKDGLVETIKYFRGELKKTGEIIPTGPDASKPR 473

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BLAST of NO09G00330 vs. NCBI_GenBank
Match: XP_002185484.1 (nad-dependent epimerase/dehydratase [Phaeodactylum tricornutum CCAP 1055/1] >EEC42971.1 nad-dependent epimerase/dehydratase [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 486.1 bits (1250), Expect = 1.300e-133
Identity = 232/338 (68.64%), Postives = 274/338 (81.07%), Query Frame = 0

Query:  141 FFPPSAVLSESQRMRVLVTGGAGFVGSHLVDRLMEEGHEVIVLDNMFTGRKKNVAHWIGHPNFMLIVHDVVEPIMLE-----------------YNPIKTIKTSTMGTLNMLGLAKRVRARMLLTSTSEVYGDPQIHPQPESYWGNVNPIGPRACYDEGKRVAETMMYAYHNQGKVDVRVARIFNTFGPRMHPNDGRVVSNFIIQALQGKDITIYGEGQQTRSFQYVEDLVTGLIKLMNSDYGLPCNLGNPEEYTVKAFALLVKELVTGSRSSISYMPATKDDPAKRKPDITVAREVLDWQPRVPVREGLSKTVAYFRAELEETGEIVPTGPDAARPK 462
            +  P+ VL + QR ++LVTGGAGFVGSHLVD+LM +G EVIV+DN FTG+KKNVAHW+ HPNF L+VHDV EPI LE                 YNP+KTIKTSTMGTLNMLGLAKRVRA++LLTSTSE+YGDP++HPQPESYWGNVN IGPR+CYDEGKRVAETMMY+Y NQ  VDVRVARIFNTFGPRMHPNDGRVVSNFIIQALQ K++TIYGEG+QTRSFQYV DLV GL  LMN +Y LP NLGNPEEY+VK FA  ++EL T S S I ++P ++DDP++R+PDIT A+  L W+P+V V++GL KT+ YF   LE  GEI+PTGP AA+P+
Sbjct:  177 YIMPTKVLPDHQRKKILVTGGAGFVGSHLVDKLMMDGMEVIVVDNFFTGQKKNVAHWLHHPNFSLVVHDVTEPIQLEVDEIYHLACPASPPHYQYNPVKTIKTSTMGTLNMLGLAKRVRAKILLTSTSEIYGDPKVHPQPESYWGNVNTIGPRSCYDEGKRVAETMMYSYKNQNGVDVRVARIFNTFGPRMHPNDGRVVSNFIIQALQNKNMTIYGEGKQTRSFQYVTDLVDGLYALMNGNYDLPVNLGNPEEYSVKDFATYIQEL-TKSTSDIIFLPKSEDDPSQRRPDITTAKRELGWEPQVKVQKGLEKTIEYFARVLESAGEIIPTGPGAAKPE 513

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BLAST of NO09G00330 vs. NCBI_GenBank
Match: XP_002291929.1 (dtdp-glucose 4,6-dehydratase [Thalassiosira pseudonana CCMP1335] >EED90780.1 dtdp-glucose 4,6-dehydratase [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 481.5 bits (1238), Expect = 3.200e-132
Identity = 221/331 (66.77%), Postives = 266/331 (80.36%), Query Frame = 0

Query:  148 LSESQRMRVLVTGGAGFVGSHLVDRLMEEGHEVIVLDNMFTGRKKNVAHWIGHPNFMLIVHDVVEPIMLE-----------------YNPIKTIKTSTMGTLNMLGLAKRVRARMLLTSTSEVYGDPQIHPQPESYWGNVNPIGPRACYDEGKRVAETMMYAYHNQGKVDVRVARIFNTFGPRMHPNDGRVVSNFIIQALQGKDITIYGEGQQTRSFQYVEDLVTGLIKLMNSDYGLPCNLGNPEEYTVKAFALLVKELVTGSRSSISYMPATKDDPAKRKPDITVAREVLDWQPRVPVREGLSKTVAYFRAELEETGEIVPTGPDAARPK 462
            L ++ R ++LVTGGAGFVGSHLVDRLM EGHEV+VLDN FTGRK NV HW+ HPNF L+ HDV++PI+LE                 YNP+KTIKTSTMGT+NMLGLAKRV+AR+LL STSE+YGDP +HPQPESYWGNV+ IGPRACYDEGKRVAETMMYAY NQ  V +R+ARIFNTFGPRMHPNDGRVVSNFIIQ+LQ KDITIYG+G QTRSFQYV+DL+ GL+KLMN  Y  P N+GNP+EY++K FA  ++++ T S+S I ++P   DDP++R+PDI+ A+  L W P+V V EGL KT+ YF+ E+E  GEIVPTGPDA +PK
Sbjct:   54 LPDALRKKILVTGGAGFVGSHLVDRLMSEGHEVVVLDNFFTGRKANVEHWLHHPNFSLVRHDVIQPILLEVDQIYHLACPASPPHYQYNPVKTIKTSTMGTINMLGLAKRVKARILLASTSEIYGDPTVHPQPESYWGNVHTIGPRACYDEGKRVAETMMYAYKNQNNVSIRIARIFNTFGPRMHPNDGRVVSNFIIQSLQNKDITIYGDGAQTRSFQYVDDLINGLVKLMNGSYDSPVNIGNPDEYSIKDFATKIRDM-TNSKSEIKFLPKVADDPSQREPDISTAKRELGWSPKVSVEEGLKKTIEYFKGEVESAGEIVPTGPDAVKPK 383

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BLAST of NO09G00330 vs. NCBI_GenBank
Match: OEU08397.1 (putative dTDP-glucose 4,6-dehydratase [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 468.4 bits (1204), Expect = 2.800e-128
Identity = 221/334 (66.17%), Postives = 266/334 (79.64%), Query Frame = 0

Query:  147 VLSESQRMRVLVTGGAGFVGSHLVDRLMEEGHEVIVLDNMFTGRKKNVAHWIGHPNFMLIVHDVVEPIMLE-----------------YNPIKTIKTSTMGTLNMLGLAKRVRARMLLTSTSEVYGDPQIHPQPESYWGNVNPIGPRACYDEGKRVAETMMYAYHNQGKVDVRVARIFNTFGPRMHPNDGRVVSNFIIQALQGKDITIYGEGQQTRSFQYVEDLVTGLIKLMNSDYGLPCNLGNPEEYTVKAFALLVKELVTGSRSSISYMPATKDDPAKRKPDITVAREVLDWQPRVPVREGLSKTVAYFRAELEETGE--IVPTGPDAARPK 462
            ++ +S R+++L+TGGAGFVGSHLVD+LM+ GHE+IVLDN FTG+KKN+ HW  HPNF +I HD+ EPI+LE                 YNP+KTIKTSTMGTLNMLGLAKRV+AR+LL STSE+YGDP IHPQPESYWGNVN +GPR+CYDEGKRVAETMMYAY  Q  V+VR+ARIFNTFGPRMHPNDGRVVSNFIIQALQ KDITIYG+G QTRSFQYV DLV GL+KLMNSDY  P N+GNP+EY++K FA  +KE+ T S+S I Y+P   DDP +R PDIT A+  L+W P+  V+ GL+K V YF+A L+  G+  I PTGP+A++PK
Sbjct:   82 IVCDSSRLKILITGGAGFVGSHLVDKLMQVGHEIIVLDNFFTGQKKNIEHWTHHPNFTVIRHDITEPILLEVDQIYHLACPASPPHYQYNPVKTIKTSTMGTLNMLGLAKRVKARILLASTSEIYGDPNIHPQPESYWGNVNTLGPRSCYDEGKRVAETMMYAYKEQNNVEVRIARIFNTFGPRMHPNDGRVVSNFIIQALQNKDITIYGDGNQTRSFQYVNDLVEGLVKLMNSDYDGPVNIGNPDEYSIKNFAEQIKEM-TSSQSKIIYLPKVADDPTQRNPDITTAKAKLNWSPQWHVKAGLAKAVEYFQAVLDMAGDDGIKPTGPEASKPK 414

[Close]

BLAST of NO09G00330 vs. NCBI_GenBank
Match: XP_009038566.1 (hypothetical protein AURANDRAFT_28689 [Aureococcus anophagefferens] >EGB06820.1 hypothetical protein AURANDRAFT_28689 [Aureococcus anophagefferens])

HSP 1 Score: 464.9 bits (1195), Expect = 3.100e-127
Identity = 228/343 (66.47%), Postives = 268/343 (78.13%), Query Frame = 0

Query:  142 FPPSAVLSESQRMRVLVTGGAGFVGSHLVDRLMEEGHEVIVLDNMFTGRKKNVAHWIGHPNFMLIVHDVVEPIMLE-----------------YNPIKTIKTSTMGTLNMLGLAKRVRARMLLTSTSEVYGDPQIHPQPESYWGNVNPIGPRACYDEGKRVAETMMYAYHNQGKVDVRVARIFNTFGPRMHPNDGRVVSNFIIQALQGKDITIYGEGQQTRSFQYVEDLVTGLIKLMNSDYGLPCNLGNPEEYTVKAFALLVKELVTGSRSSISYMPATKDDPAKRKPDITVAREVLDWQPRVPVREGLSKTVAYFRAELEET-GEIVPTGPDAARPKPCCTG 467
            +PP   L +++++R+LVTGGAGFVGS+LVD+LM  GHEV VLDN+FTGRKKN+ HW  HP+F  IV DVVE IMLE                 YNPIKTIKTST GTLNMLGLAKRV ARMLL STSE+YGDP++HPQ E+YWGNVNPIGPRACYDEGKRVAETMMY+Y+ Q  V+VRVARIFNTFG RMHPNDGRVVSNFIIQALQ KDIT+YG+G QTRSFQ+V+DLV GL  LMNS+Y LP NLGNP+EYTV  FA  +K+L TGSRS I  +PAT DDP +RKPDIT A+  + WQP+  V  GL++T+ YF+ EL +  G I PTGP A++P+P   G
Sbjct:   13 YPPVRKLPQNEKLRILVTGGAGFVGSNLVDKLMRGGHEVTVLDNLFTGRKKNIEHWFNHPHFQFIVGDVVESIMLEVDQIYHLACPASPPHYQYNPIKTIKTSTEGTLNMLGLAKRVNARMLLASTSEIYGDPEVHPQVETYWGNVNPIGPRACYDEGKRVAETMMYSYNRQLGVEVRVARIFNTFGRRMHPNDGRVVSNFIIQALQNKDITLYGDGSQTRSFQFVDDLVDGLHALMNSNYSLPVNLGNPDEYTVAGFAETIKKL-TGSRSKIVRLPATTDDPRQRKPDITTAKTHIGWQPKWTVGRGLAETIEYFKRELADMGGSITPTGPLASKPRPRADG 354

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BLAST of NO09G00330 vs. NCBI_GenBank
Match: GAX12776.1 (UDP-glucuronate decarboxylase [Fistulifera solaris])

HSP 1 Score: 463.4 bits (1191), Expect = 8.900e-127
Identity = 223/334 (66.77%), Postives = 263/334 (78.74%), Query Frame = 0

Query:  145 SAVLSESQRMRVLVTGGAGFVGSHLVDRLMEEGHEVIVLDNMFTGRKKNVAHWIGHPNFMLIVHDVVEPIMLE-----------------YNPIKTIKTSTMGTLNMLGLAKRVRARMLLTSTSEVYGDPQIHPQPESYWGNVNPIGPRACYDEGKRVAETMMYAYHNQGKVDVRVARIFNTFGPRMHPNDGRVVSNFIIQALQGKDITIYGEGQQTRSFQYVEDLVTGLIKLMNSDYGLPCNLGNPEEYTVKAFALLVKELVTGSRSSISYMPATKDDPAKRKPDITVAREVLDWQPRVPVREGLSKTVAYFRAELEETGEIVPTGPDAARPK 462
            +A L +  R ++LVTGG+GFVGSHLVD+LM EGHEVIV+DN FTG+KKN+AHW+ HPNF LIVHDV EPI LE                 YNP+KTIKTS MGTLNMLGLAKRV AR+LL+STSE+YGDP++ PQPESYWG+VN IGPRACYDEGKRVAETMMY+Y  Q  +D+RVARIFNTFGPRMHPNDGRVVSNFII+ALQ KD+TIYG+G+QTRSFQYV DLV GL  LMN+DY  P NLGNP E+T+  FA  V+ L T S S I  +P + DDP +R+PDI  A+  LDW+P+V V EGL KT+ YF A L+E GEI+PTGP AA+P+
Sbjct:  149 TAYLPDHHRKKILVTGGSGFVGSHLVDKLMMEGHEVIVVDNFFTGQKKNIAHWLHHPNFSLIVHDVTEPIQLEVDQIYHLACPASPPHYQYNPVKTIKTSVMGTLNMLGLAKRVHARILLSSTSEIYGDPEVSPQPESYWGHVNTIGPRACYDEGKRVAETMMYSYQKQNGLDIRVARIFNTFGPRMHPNDGRVVSNFIIEALQNKDMTIYGDGKQTRSFQYVSDLVDGLHALMNNDYTQPVNLGNPSEWTIAEFAEHVQAL-TKSSSQIIKLPKSTDDPQQRRPDIQTAKRELDWEPKVSVDEGLKKTIEYFAAVLKEAGEIIPTGPGAAKPE 481

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BLAST of NO09G00330 vs. NCBI_GenBank
Match: GAX11325.1 (UDP-glucuronate decarboxylase [Fistulifera solaris])

HSP 1 Score: 463.0 bits (1190), Expect = 1.200e-126
Identity = 223/334 (66.77%), Postives = 262/334 (78.44%), Query Frame = 0

Query:  145 SAVLSESQRMRVLVTGGAGFVGSHLVDRLMEEGHEVIVLDNMFTGRKKNVAHWIGHPNFMLIVHDVVEPIMLE-----------------YNPIKTIKTSTMGTLNMLGLAKRVRARMLLTSTSEVYGDPQIHPQPESYWGNVNPIGPRACYDEGKRVAETMMYAYHNQGKVDVRVARIFNTFGPRMHPNDGRVVSNFIIQALQGKDITIYGEGQQTRSFQYVEDLVTGLIKLMNSDYGLPCNLGNPEEYTVKAFALLVKELVTGSRSSISYMPATKDDPAKRKPDITVAREVLDWQPRVPVREGLSKTVAYFRAELEETGEIVPTGPDAARPK 462
            +A L +  R ++LVTGG+GFVGSHLVD+LM EGHEVIV+DN FTG+KKN+AHW+ HPNF LIVHDV EPI LE                 YNP+KTIKTS MGTLNMLGLAKRV AR+LL+STSE+YGDP++ PQPESYWG+VN IGPRACYDEGKRVAETMMY+Y  Q  +D+RVARIFNTFGPRMHPNDGRVVSNFII+ALQ KD+TIYG+G+QTRSFQYV DLV GL  LMN+DY  P NLGNP E+T+  FA  V+ L T S S I  +P + DDP +R+PDI  A+  LDW+P+V V EGL KT+ YF A L E GEI+PTGP AA+P+
Sbjct:  148 TAYLPDHHRKKILVTGGSGFVGSHLVDKLMMEGHEVIVVDNFFTGQKKNIAHWLHHPNFSLIVHDVTEPIQLEVDQIYHLACPASPPHYQYNPVKTIKTSVMGTLNMLGLAKRVHARILLSSTSEIYGDPEVSPQPESYWGHVNTIGPRACYDEGKRVAETMMYSYQKQNGLDIRVARIFNTFGPRMHPNDGRVVSNFIIEALQNKDMTIYGDGKQTRSFQYVSDLVDGLHALMNNDYTQPVNLGNPSEWTIAEFAEHVQAL-TKSSSQIIKLPKSTDDPQQRRPDIQTAKRELDWEPKVSVDEGLKKTIEYFAAVLREAGEIIPTGPGAAKPE 480

[Close]

BLAST of NO09G00330 vs. NCBI_GenBank
Match: GBG32002.1 (UDP-glucose 4-epimerase [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 462.6 bits (1189), Expect = 1.500e-126
Identity = 227/363 (62.53%), Postives = 273/363 (75.21%), Query Frame = 0

Query:  111 EVIQREVECQVSERVCSMNKAQQAAGGRKNFFPPSAVLSESQRMRVLVTGGAGFVGSHLVDRLMEEGHEVIVLDNMFTGRKKNVAHWIGHPNFMLIVHDVVEPIMLE-----------------YNPIKTIKTSTMGTLNMLGLAKRVRARMLLTSTSEVYGDPQIHPQPESYWGNVNPIGPRACYDEGKRVAETMMYAYHNQGKVDVRVARIFNTFGPRMHPNDGRVVSNFIIQALQGKDITIYGEGQQTRSFQYVEDLVTGLIKLMNSDYGLPCNLGNPEEYTVKAFALLVKELVTGSRSSISYMPATKDDPAKRKPDITVAREVLDWQPRVPVREGLSKTVAYFRAELEETGEIVPTGPD 457
            E ++  V   V   V  +     A  G    FPP+  L  +Q+ R+LVTGGAGFVGSHLVDRLM +GH V  LDN FTGRK+NV  WIGHPNF LI HDVV P M+E                 YNP+KTIKTS  GTLNMLGLAKR +AR+LLTSTSEVYGDP++HPQ E+Y G V+  GPRACYDEGKRVAETMMYAY  Q  VD+RVARIFNTFG  MHP+DGRVVSNFIIQALQGKDITIYG+G+QTRSFQYVEDLV+GL+KLMNSDY  P NLGNP+EYT++ FA ++ ++V G++S I ++P+T+DDP++RKPDI++A+ VL W+P+V VR GL +T+ YFR ELE TG+  P  PD
Sbjct:   36 EALENHVRSMVDREVTRVITTINAQPGVVKQFPPTEKLLTTQQKRILVTGGAGFVGSHLVDRLMRQGHIVYALDNFFTGRKENVEAWIGHPNFELIHHDVVNPYMIEVDQIYNLACPASPPHYQYNPVKTIKTSVEGTLNMLGLAKRTKARVLLTSTSEVYGDPEVHPQSETYHGRVSITGPRACYDEGKRVAETMMYAYKKQDGVDIRVARIFNTFGENMHPDDGRVVSNFIIQALQGKDITIYGDGKQTRSFQYVEDLVSGLVKLMNSDYDGPVNLGNPDEYTIREFAEMIVQMV-GTKSKIVHLPSTQDDPSRRKPDISLAKRVLGWEPKVHVRTGLERTIEYFRHELERTGKFSPIKPD 397

[Close]

BLAST of NO09G00330 vs. NCBI_GenBank
Match: XP_002289621.1 (dtdp-glucose 4,6-dehydratase, partial [Thalassiosira pseudonana CCMP1335] >EED93158.1 dtdp-glucose 4,6-dehydratase, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 461.1 bits (1185), Expect = 4.400e-126
Identity = 217/310 (70.00%), Postives = 254/310 (81.94%), Query Frame = 0

Query:  148 LSESQRMRVLVTGGAGFVGSHLVDRLMEEGHEVIVLDNMFTGRKKNVAHWIGHPNFMLIVHDVVEPIMLE-----------------YNPIKTIKTSTMGTLNMLGLAKRVRARMLLTSTSEVYGDPQIHPQPESYWGNVNPIGPRACYDEGKRVAETMMYAYHNQGKVDVRVARIFNTFGPRMHPNDGRVVSNFIIQALQGKDITIYGEGQQTRSFQYVEDLVTGLIKLMNSDYGLPCNLGNPEEYTVKAFALLVKELVTGSRSSISYMPATKDDPAKRKPDITVAREVLDWQPRVPVREGLSKTVAYF 441
            L + +R ++LVTGGAGFVGSHLVD+LM EGHEVIV+DN FTG++KN+ HW+ HP F L+VHDV EPIMLE                 YNP+KTIKTSTMGT+NMLGLAKRV+A++LLTSTSE+YGDP++HPQPESYWGNVN IGPR+CYDEGKRVAETMMY+Y NQ  VDVRVARIFNTFGPRMHPNDGRVVSNFIIQ+LQ K +TIYG+G QTRSFQYV DLV GL  LMN  Y LP NLGNP+EYTVK FA  +KE +TGS S IS++ AT+DDP +RKPDIT A+  L+W+P+V V+EGL KT+ YF
Sbjct:    6 LPDGKRKKILVTGGAGFVGSHLVDKLMMEGHEVIVIDNFFTGQRKNIEHWMHHPRFSLVVHDVTEPIMLEVDEIYHLACPASPPHYQYNPVKTIKTSTMGTINMLGLAKRVKAKILLTSTSEIYGDPKVHPQPESYWGNVNTIGPRSCYDEGKRVAETMMYSYRNQNNVDVRVARIFNTFGPRMHPNDGRVVSNFIIQSLQDKPLTIYGDGSQTRSFQYVSDLVDGLHALMNGGYDLPVNLGNPDEYTVKHFAEYIKE-ITGSASDISFLKATQDDPTQRKPDITTAKRELNWEPKVTVKEGLQKTIQYF 314

The following BLAST results are available for this feature:

BLAST of NO09G00330 vs. NCBI_GenBank

BLAST of NO09G00330 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
XP_005855230.1	4.200e-177	85.08	UDP-glucuronate decarboxylase [Nannochloropsis gad...	[more]
CBJ48392.1	1.700e-141	67.29	conserved unknown protein [Ectocarpus siliculosus]	[more]
XP_002185484.1	1.300e-133	68.64	nad-dependent epimerase/dehydratase [Phaeodactylum...	[more]
XP_002291929.1	3.200e-132	66.77	dtdp-glucose 4,6-dehydratase [Thalassiosira pseudo...	[more]
OEU08397.1	2.800e-128	66.17	putative dTDP-glucose 4,6-dehydratase [Fragilariop...	[more]
XP_009038566.1	3.100e-127	66.47	hypothetical protein AURANDRAFT_28689 [Aureococcus...	[more]
GAX12776.1	8.900e-127	66.77	UDP-glucuronate decarboxylase [Fistulifera solaris...	[more]
GAX11325.1	1.200e-126	66.77	UDP-glucuronate decarboxylase [Fistulifera solaris...	[more]
GBG32002.1	1.500e-126	62.53	UDP-glucose 4-epimerase [Aurantiochytrium sp. FCC1...	[more]
XP_002289621.1	4.400e-126	70.00	dtdp-glucose 4,6-dehydratase, partial [Thalassiosi...	[more]

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Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL119	nonsL119	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR021	ncniR021	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR127	ngnoR127	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK010491	NSK010491	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO09G00330.1	NO09G00330.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|26296	gene_4524	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100982g2	gene2800	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO09G00330.1	NO09G00330.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO09G00330 ID=NO09G00330|Name=NO09G00330|organism=Nannochloropsis oceanica|type=gene|length=2578bp
ATGTCCGGTCTGACTGAAGGTGTCAGAGGCAGCGTGgtaggcatggctct
agcctcctggcaggccttcatcccccgcagacccgaaatgccccagccca
gcgatgcgctcgaccaaaaacgagtcccccccgccctgatatcaacacac
aatccttccacacgcgcagGAGGACTTTAACCAGCAGCCAGGACTGGCAC
CGGCAGAAGCAGCAGCAGCAGGCATGCGGAACGGGGGACGCGCCTCGGAT
GGCACTTCTTCGTCGAAAGCAGCTCTGTGCGCTGCAGCCGCCGTAGGAGG
GGCAGCCTTGGCTGTGGGGGTCGCGTACGTGTGGCCACAGCTTATTGAGG
AGTATACAGGCGTTAAGGTTGTGGTAAAGAAGACGATTGGCAGCAGCAGT
AGCAGCAAGAGCTGCAGCGGGCAGAATGGGGGCCAGGGCGATGCAATCAC
CCCTGCCCTCCGCGAAGTCATCCAGCGGGAGGTTGAATGCCAAGTATCCG
AGCGGGTGTGTTCCATGAACAAAGCCCAGCAAGCGGCGGGTGGTAGGAAG
AATTTCTTTCCGCCTTCGGCTGTGTTGTCAGAGAGCCAGCGGATGCGTGT
GTTGGTGACGGGAGGGGCGGGTTTCGTGGGGTCACATCTGGTGGACCGAC
TGATGGAGGAAGGGCACGAGGTGATTGTTTTGGACAACATGTTCACGGGG
CGGAAGAAAAATGTGGCCCATTGGATCGGGCACCCGAACTTTATGTTGAT
CGTCCACGACGTCGTGGAGCCCATCATGCTGGAGgtggatcagatctacc
acctggcttgccctgcctccccccccattatcagTACAACCCGATCAAGA
CCATCAAGACGAGCACGATGGGGACGTTAAACATGCTGGGCCTGGCCAAG
CGGGTGCGGGCGCGGATGCTATTGACGTCGACGAGTGAAGTGTATGGAGA
CCCGCAGgtacgcacgcacgcacgcacgccctccctccctccctctctcc
ctccctacctcccttcccctccccttctatatcgctcttagccttcagca
cttcctctttcttccagATTCATCCCCAACCTGAGAGCTATTGGGGCAAC
GTGAACCCCATTGGTCCTCGGGCATGCTACGACGAAGGAAAACGCGTTGC
CGAGACCATGATGTACGCTTATCACAATCAAGGGAAGGTGGATGTCCGGG
TCGCGAGGATCTTCAATACGTTTGGTCCGAGGATGCATCCGAACGATGGG
AGGGTGGTCAGgtgggtagggagggagggagggaaggaaggagggaagga
gggagggaggggtttttgtgctggatcgatgggagggtgaaaaggtgggg
aaggagggagggagaaagggagggaggaaggaaatgcgaggagacgagca
gctttcactcatttcattcttttcattctctttgtgtccgaatgcctgct
tggtcctttatttgcccagTAATTTCATCATTCAGGCGTTGCAAGGGAAA
GATATTACGATCTACGGGGAGGGGCAGCAGACGCGTTCGTTTCAGgtaca
tgggtatatatatatatatatatatatatatatatgtgtgtgtgtgtgtg
tgtgtgtgtgtgtttgtgtatgtgtgtgtatgtctgtatatgtcttgtgt
ctgtgtgtctgtgtgtatctatattatatctatcttcccttgtagccatc
agtagagagcgggaccatgcgtgtgatgcggtgggtttcctcaccctcct
tccctcccttccttcctccctccctcccttccttccttccttccttcctt
ccttcctccctcagTATGTCGAGGACCTCGTCACGGGGCTCATCAAGCTC
ATGAACTCGGACTACGGCCTGCCGTGCAATCTAGGCAACCCGGAAGAGTA
CACCGTCAAGGCCTTCGCCCTCCTTGTCAAGGAGCTTGTCACGGGCTCCC
GCAGTAGCATCAGCTACATGCCGGCCACCAAGGATGACCCTGCGAAGCGC
AAGCCTGACATCACGGTGGCCAGGGAGGTGCTGGATTGGCAGCCCCGTGT
TCCAGTGCGGGAAGGACTGAGCAAGACGGTGGCTTACTTTAGAGCCGAAT
TGGAGGAGACGgtaatgcggaggacagggcgggagggagggcgggaaaga
gagagggagggagggagggtgggtccttgaagcgaatgatggcgctggta
gagggagggaaggagggagagagggaagaagggggggagagggcacggag
agtgttttgtgcgtgcttattgtagatcctgaagtgtccgcttgctgtct
tcatccctttcatctctcatctctcgcacgttttcctcttgtgaacgtca
ttcacccactccaccggctcagatctttcacagcattgataacccacttt
accccctccttttttctgcatcttaatcaaatcatttcagGGTGAAATTG
TCCCGACGGGCCCTGACGCCGCGCGCCCCAAGCCCTGCTGCACCGGTGGT
CTCTCGCCGAGTCGGCAGTACGAGGAGCACTTGCACGCTGAGACGGCGGA
AATGGCAGCTGAGGAGGGCCTTTACTAA

protein sequence of NO09G00330.1

>NO09G00330.1-protein ID=NO09G00330.1-protein|Name=NO09G00330.1|organism=Nannochloropsis oceanica|type=polypeptide|length=493bp
MSGLTEGVRGSVEDFNQQPGLAPAEAAAAGMRNGGRASDGTSSSKAALCA
AAAVGGAALAVGVAYVWPQLIEEYTGVKVVVKKTIGSSSSSKSCSGQNGG
QGDAITPALREVIQREVECQVSERVCSMNKAQQAAGGRKNFFPPSAVLSE
SQRMRVLVTGGAGFVGSHLVDRLMEEGHEVIVLDNMFTGRKKNVAHWIGH
PNFMLIVHDVVEPIMLEYNPIKTIKTSTMGTLNMLGLAKRVRARMLLTST
SEVYGDPQIHPQPESYWGNVNPIGPRACYDEGKRVAETMMYAYHNQGKVD
VRVARIFNTFGPRMHPNDGRVVSNFIIQALQGKDITIYGEGQQTRSFQYV
EDLVTGLIKLMNSDYGLPCNLGNPEEYTVKAFALLVKELVTGSRSSISYM
PATKDDPAKRKPDITVAREVLDWQPRVPVREGLSKTVAYFRAELEETGEI
VPTGPDAARPKPCCTGGLSPSRQYEEHLHAETAEMAAEEGLY*

Synonyms

Publications