NO09G00330.1, NO09G00330.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G00330.1
Unique NameNO09G00330.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1479
Alignment locationchr9:161853..164430 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:161853..164430 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO09G00330.1 vs.
Match: XP_005855230.1 (UDP-glucuronate decarboxylase [Nannochloropsis gaditana CCMP526]; EKU21132.1 UDP-glucuronate decarboxylase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 627.9 bits (1618), Expect = 2.700e-176
Identity = 331/486 (68.11%), Postives = 359/486 (73.87%), Query Frame = 0
Query:   54 VGGAALAVGVAYVWPQLIEEYTGVKVVVKKTIGSSSSSKSCSGQNGGQGDA-----------------ITPALREVIQREVECQVSERVCSMNKA--QQAAGGRKN-----------------FFPPSAVLSESQRMRVLVTGGAGFVGSHLVDRLMEEGHEVIVLDNMFTGRKKNVAHWIGHPNFMLIVHDVVEPIMLE-----------------YNPIKTIKTSTMGTLNMLGLAKRVRARMLLTSTSEVYGDPQIHPQPESYWGNVNPIGPRACYDEGKRVAETMMYAYHNQGKVDVRVARIFNTFGPRMHPNDGRVVSNFIIQALQGKDITIYGEGQQTRSFQYVEDLVTGLIKLMNSDYGLPCNLGNPEEYTVKAFALLVKELVTGSRSSISYMPATKDDPAKRKPDITVAREVLDWQPRVPVREGLSKTVAYFRAELEETGEIVPTGPDAARPKPCCTGGLSPSRQYEEHLHAETAEMA 487
            VG  AL + V YV+ +            +  +  +SSS    G  GG G                   ++  LR  I+ EV  ++   +    K   Q+A   R                    +PP+A LSE QR R+LVTGGAGFVGSHLVDRLM EGHEVIV+DNMFTGRKKNVAHWIGHP+FMLIVHDVVEPI+LE                 YNPIKTIKTSTMGTLNMLGLAKRVRARMLLTSTSEVYGDPQIHPQPESYWGNVNPIGPRACYDEGKRVAETMMYAYHNQ  VDVRVARIFNTFGPRMHPNDGRVVSNFIIQALQGKDITIYGEG QTRSFQYVEDLVTGL KLMNSDYGLP NLGNPEEYTVK FALLVKELV GS S+I +MPATKDDPAKRKPDI VA +VL WQPRVPVREGLSKTVAYFR+ELE+TGEIVPTGPDA RPKPCC+  LSPSR+YE+HL+AET   A
Sbjct:   39 VGALALVISVNYVFGR------------EPLVLRASSSHVRGGDEGGNGGMQMLQHDGRQVESHKPVLVSEELRRTIKEEVRAEILAAMAEEEKKRRQEAPHARPGTRGDGERTVSRQEQLGQLYPPTATLSEGQRRRILVTGGAGFVGSHLVDRLMAEGHEVIVVDNMFTGRKKNVAHWIGHPHFMLIVHDVVEPILLEVDQIYHLACPASPPHYQYNPIKTIKTSTMGTLNMLGLAKRVRARMLLTSTSEVYGDPQIHPQPESYWGNVNPIGPRACYDEGKRVAETMMYAYHNQSSVDVRVARIFNTFGPRMHPNDGRVVSNFIIQALQGKDITIYGEGHQTRSFQYVEDLVTGLTKLMNSDYGLPVNLGNPEEYTVKDFALLVKELVVGSPSAIVHMPATKDDPAKRKPDIRVAMDVLGWQPRVPVREGLSKTVAYFRSELEDTGEIVPTGPDATRPKPCCSNVLSPSREYEDHLYAETMPAA 512          
The following BLAST results are available for this feature:
BLAST of NO09G00330.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855230.12.700e-17668.11UDP-glucuronate decarboxylase [Nannochloropsis gad... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G00330NO09G00330Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G00330.1NO09G00330.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G00330.1.cds1NO09G00330.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G00330.1.cds2NO09G00330.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G00330.1.cds3NO09G00330.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G00330.1.cds4NO09G00330.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G00330.1.cds5NO09G00330.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G00330.1.cds6NO09G00330.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G00330.1.cds7NO09G00330.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G00330.1 ID=NO09G00330.1|Name=NO09G00330.1|organism=Nannochloropsis oceanica|type=mRNA|length=1479bp
ATGTCCGGTCTGACTGAAGGTGTCAGAGGCAGCGTGGAGGACTTTAACCA
GCAGCCAGGACTGGCACCGGCAGAAGCAGCAGCAGCAGGCATGCGGAACG
GGGGACGCGCCTCGGATGGCACTTCTTCGTCGAAAGCAGCTCTGTGCGCT
GCAGCCGCCGTAGGAGGGGCAGCCTTGGCTGTGGGGGTCGCGTACGTGTG
GCCACAGCTTATTGAGGAGTATACAGGCGTTAAGGTTGTGGTAAAGAAGA
CGATTGGCAGCAGCAGTAGCAGCAAGAGCTGCAGCGGGCAGAATGGGGGC
CAGGGCGATGCAATCACCCCTGCCCTCCGCGAAGTCATCCAGCGGGAGGT
TGAATGCCAAGTATCCGAGCGGGTGTGTTCCATGAACAAAGCCCAGCAAG
CGGCGGGTGGTAGGAAGAATTTCTTTCCGCCTTCGGCTGTGTTGTCAGAG
AGCCAGCGGATGCGTGTGTTGGTGACGGGAGGGGCGGGTTTCGTGGGGTC
ACATCTGGTGGACCGACTGATGGAGGAAGGGCACGAGGTGATTGTTTTGG
ACAACATGTTCACGGGGCGGAAGAAAAATGTGGCCCATTGGATCGGGCAC
CCGAACTTTATGTTGATCGTCCACGACGTCGTGGAGCCCATCATGCTGGA
GTACAACCCGATCAAGACCATCAAGACGAGCACGATGGGGACGTTAAACA
TGCTGGGCCTGGCCAAGCGGGTGCGGGCGCGGATGCTATTGACGTCGACG
AGTGAAGTGTATGGAGACCCGCAGATTCATCCCCAACCTGAGAGCTATTG
GGGCAACGTGAACCCCATTGGTCCTCGGGCATGCTACGACGAAGGAAAAC
GCGTTGCCGAGACCATGATGTACGCTTATCACAATCAAGGGAAGGTGGAT
GTCCGGGTCGCGAGGATCTTCAATACGTTTGGTCCGAGGATGCATCCGAA
CGATGGGAGGGTGGTCAGTAATTTCATCATTCAGGCGTTGCAAGGGAAAG
ATATTACGATCTACGGGGAGGGGCAGCAGACGCGTTCGTTTCAGTATGTC
GAGGACCTCGTCACGGGGCTCATCAAGCTCATGAACTCGGACTACGGCCT
GCCGTGCAATCTAGGCAACCCGGAAGAGTACACCGTCAAGGCCTTCGCCC
TCCTTGTCAAGGAGCTTGTCACGGGCTCCCGCAGTAGCATCAGCTACATG
CCGGCCACCAAGGATGACCCTGCGAAGCGCAAGCCTGACATCACGGTGGC
CAGGGAGGTGCTGGATTGGCAGCCCCGTGTTCCAGTGCGGGAAGGACTGA
GCAAGACGGTGGCTTACTTTAGAGCCGAATTGGAGGAGACGGGTGAAATT
GTCCCGACGGGCCCTGACGCCGCGCGCCCCAAGCCCTGCTGCACCGGTGG
TCTCTCGCCGAGTCGGCAGTACGAGGAGCACTTGCACGCTGAGACGGCGG
AAATGGCAGCTGAGGAGGGCCTTTACTAA
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protein sequence of NO09G00330.1

>NO09G00330.1-protein ID=NO09G00330.1-protein|Name=NO09G00330.1|organism=Nannochloropsis oceanica|type=polypeptide|length=493bp
MSGLTEGVRGSVEDFNQQPGLAPAEAAAAGMRNGGRASDGTSSSKAALCA
AAAVGGAALAVGVAYVWPQLIEEYTGVKVVVKKTIGSSSSSKSCSGQNGG
QGDAITPALREVIQREVECQVSERVCSMNKAQQAAGGRKNFFPPSAVLSE
SQRMRVLVTGGAGFVGSHLVDRLMEEGHEVIVLDNMFTGRKKNVAHWIGH
PNFMLIVHDVVEPIMLEYNPIKTIKTSTMGTLNMLGLAKRVRARMLLTST
SEVYGDPQIHPQPESYWGNVNPIGPRACYDEGKRVAETMMYAYHNQGKVD
VRVARIFNTFGPRMHPNDGRVVSNFIIQALQGKDITIYGEGQQTRSFQYV
EDLVTGLIKLMNSDYGLPCNLGNPEEYTVKAFALLVKELVTGSRSSISYM
PATKDDPAKRKPDITVAREVLDWQPRVPVREGLSKTVAYFRAELEETGEI
VPTGPDAARPKPCCTGGLSPSRQYEEHLHAETAEMAAEEGLY*
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mRNA from alignment at chr9:161853..164430-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G00330.1 ID=NO09G00330.1|Name=NO09G00330.1|organism=Nannochloropsis oceanica|type=mRNA|length=2578bp|location=Sequence derived from alignment at chr9:161853..164430- (Nannochloropsis oceanica)
ATGTCCGGTCTGACTGAAGGTGTCAGAGGCAGCGTGGTAGGCATGGCTCT AGCCTCCTGGCAGGCCTTCATCCCCCGCAGACCCGAAATGCCCCAGCCCA GCGATGCGCTCGACCAAAAACGAGTCCCCCCCGCCCTGATATCAACACAC AATCCTTCCACACGCGCAGGAGGACTTTAACCAGCAGCCAGGACTGGCAC CGGCAGAAGCAGCAGCAGCAGGCATGCGGAACGGGGGACGCGCCTCGGAT GGCACTTCTTCGTCGAAAGCAGCTCTGTGCGCTGCAGCCGCCGTAGGAGG GGCAGCCTTGGCTGTGGGGGTCGCGTACGTGTGGCCACAGCTTATTGAGG AGTATACAGGCGTTAAGGTTGTGGTAAAGAAGACGATTGGCAGCAGCAGT AGCAGCAAGAGCTGCAGCGGGCAGAATGGGGGCCAGGGCGATGCAATCAC CCCTGCCCTCCGCGAAGTCATCCAGCGGGAGGTTGAATGCCAAGTATCCG AGCGGGTGTGTTCCATGAACAAAGCCCAGCAAGCGGCGGGTGGTAGGAAG AATTTCTTTCCGCCTTCGGCTGTGTTGTCAGAGAGCCAGCGGATGCGTGT GTTGGTGACGGGAGGGGCGGGTTTCGTGGGGTCACATCTGGTGGACCGAC TGATGGAGGAAGGGCACGAGGTGATTGTTTTGGACAACATGTTCACGGGG CGGAAGAAAAATGTGGCCCATTGGATCGGGCACCCGAACTTTATGTTGAT CGTCCACGACGTCGTGGAGCCCATCATGCTGGAGGTGGATCAGATCTACC ACCTGGCTTGCCCTGCCTCCCCCCCCATTATCAGTACAACCCGATCAAGA CCATCAAGACGAGCACGATGGGGACGTTAAACATGCTGGGCCTGGCCAAG CGGGTGCGGGCGCGGATGCTATTGACGTCGACGAGTGAAGTGTATGGAGA CCCGCAGGTACGCACGCACGCACGCACGCCCTCCCTCCCTCCCTCTCTCC CTCCCTACCTCCCTTCCCCTCCCCTTCTATATCGCTCTTAGCCTTCAGCA CTTCCTCTTTCTTCCAGATTCATCCCCAACCTGAGAGCTATTGGGGCAAC GTGAACCCCATTGGTCCTCGGGCATGCTACGACGAAGGAAAACGCGTTGC CGAGACCATGATGTACGCTTATCACAATCAAGGGAAGGTGGATGTCCGGG TCGCGAGGATCTTCAATACGTTTGGTCCGAGGATGCATCCGAACGATGGG AGGGTGGTCAGGTGGGTAGGGAGGGAGGGAGGGAAGGAAGGAGGGAAGGA GGGAGGGAGGGGTTTTTGTGCTGGATCGATGGGAGGGTGAAAAGGTGGGG AAGGAGGGAGGGAGAAAGGGAGGGAGGAAGGAAATGCGAGGAGACGAGCA GCTTTCACTCATTTCATTCTTTTCATTCTCTTTGTGTCCGAATGCCTGCT TGGTCCTTTATTTGCCCAGTAATTTCATCATTCAGGCGTTGCAAGGGAAA GATATTACGATCTACGGGGAGGGGCAGCAGACGCGTTCGTTTCAGGTACA TGGGTATATATATATATATATATATATATATATATGTGTGTGTGTGTGTG TGTGTGTGTGTGTTTGTGTATGTGTGTGTATGTCTGTATATGTCTTGTGT CTGTGTGTCTGTGTGTATCTATATTATATCTATCTTCCCTTGTAGCCATC AGTAGAGAGCGGGACCATGCGTGTGATGCGGTGGGTTTCCTCACCCTCCT TCCCTCCCTTCCTTCCTCCCTCCCTCCCTTCCTTCCTTCCTTCCTTCCTT CCTTCCTCCCTCAGTATGTCGAGGACCTCGTCACGGGGCTCATCAAGCTC ATGAACTCGGACTACGGCCTGCCGTGCAATCTAGGCAACCCGGAAGAGTA CACCGTCAAGGCCTTCGCCCTCCTTGTCAAGGAGCTTGTCACGGGCTCCC GCAGTAGCATCAGCTACATGCCGGCCACCAAGGATGACCCTGCGAAGCGC AAGCCTGACATCACGGTGGCCAGGGAGGTGCTGGATTGGCAGCCCCGTGT TCCAGTGCGGGAAGGACTGAGCAAGACGGTGGCTTACTTTAGAGCCGAAT TGGAGGAGACGGTAATGCGGAGGACAGGGCGGGAGGGAGGGCGGGAAAGA GAGAGGGAGGGAGGGAGGGTGGGTCCTTGAAGCGAATGATGGCGCTGGTA GAGGGAGGGAAGGAGGGAGAGAGGGAAGAAGGGGGGGAGAGGGCACGGAG AGTGTTTTGTGCGTGCTTATTGTAGATCCTGAAGTGTCCGCTTGCTGTCT TCATCCCTTTCATCTCTCATCTCTCGCACGTTTTCCTCTTGTGAACGTCA TTCACCCACTCCACCGGCTCAGATCTTTCACAGCATTGATAACCCACTTT ACCCCCTCCTTTTTTCTGCATCTTAATCAAATCATTTCAGGGTGAAATTG TCCCGACGGGCCCTGACGCCGCGCGCCCCAAGCCCTGCTGCACCGGTGGT CTCTCGCCGAGTCGGCAGTACGAGGAGCACTTGCACGCTGAGACGGCGGA AATGGCAGCTGAGGAGGGCCTTTACTAA
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Coding sequence (CDS) from alignment at chr9:161853..164430-

>NO09G00330.1 ID=NO09G00330.1|Name=NO09G00330.1|organism=Nannochloropsis oceanica|type=CDS|length=1479bp|location=Sequence derived from alignment at chr9:161853..164430- (Nannochloropsis oceanica)
ATGTCCGGTCTGACTGAAGGTGTCAGAGGCAGCGTGGAGGACTTTAACCA
GCAGCCAGGACTGGCACCGGCAGAAGCAGCAGCAGCAGGCATGCGGAACG
GGGGACGCGCCTCGGATGGCACTTCTTCGTCGAAAGCAGCTCTGTGCGCT
GCAGCCGCCGTAGGAGGGGCAGCCTTGGCTGTGGGGGTCGCGTACGTGTG
GCCACAGCTTATTGAGGAGTATACAGGCGTTAAGGTTGTGGTAAAGAAGA
CGATTGGCAGCAGCAGTAGCAGCAAGAGCTGCAGCGGGCAGAATGGGGGC
CAGGGCGATGCAATCACCCCTGCCCTCCGCGAAGTCATCCAGCGGGAGGT
TGAATGCCAAGTATCCGAGCGGGTGTGTTCCATGAACAAAGCCCAGCAAG
CGGCGGGTGGTAGGAAGAATTTCTTTCCGCCTTCGGCTGTGTTGTCAGAG
AGCCAGCGGATGCGTGTGTTGGTGACGGGAGGGGCGGGTTTCGTGGGGTC
ACATCTGGTGGACCGACTGATGGAGGAAGGGCACGAGGTGATTGTTTTGG
ACAACATGTTCACGGGGCGGAAGAAAAATGTGGCCCATTGGATCGGGCAC
CCGAACTTTATGTTGATCGTCCACGACGTCGTGGAGCCCATCATGCTGGA
GTACAACCCGATCAAGACCATCAAGACGAGCACGATGGGGACGTTAAACA
TGCTGGGCCTGGCCAAGCGGGTGCGGGCGCGGATGCTATTGACGTCGACG
AGTGAAGTGTATGGAGACCCGCAGATTCATCCCCAACCTGAGAGCTATTG
GGGCAACGTGAACCCCATTGGTCCTCGGGCATGCTACGACGAAGGAAAAC
GCGTTGCCGAGACCATGATGTACGCTTATCACAATCAAGGGAAGGTGGAT
GTCCGGGTCGCGAGGATCTTCAATACGTTTGGTCCGAGGATGCATCCGAA
CGATGGGAGGGTGGTCAGTAATTTCATCATTCAGGCGTTGCAAGGGAAAG
ATATTACGATCTACGGGGAGGGGCAGCAGACGCGTTCGTTTCAGTATGTC
GAGGACCTCGTCACGGGGCTCATCAAGCTCATGAACTCGGACTACGGCCT
GCCGTGCAATCTAGGCAACCCGGAAGAGTACACCGTCAAGGCCTTCGCCC
TCCTTGTCAAGGAGCTTGTCACGGGCTCCCGCAGTAGCATCAGCTACATG
CCGGCCACCAAGGATGACCCTGCGAAGCGCAAGCCTGACATCACGGTGGC
CAGGGAGGTGCTGGATTGGCAGCCCCGTGTTCCAGTGCGGGAAGGACTGA
GCAAGACGGTGGCTTACTTTAGAGCCGAATTGGAGGAGACGGGTGAAATT
GTCCCGACGGGCCCTGACGCCGCGCGCCCCAAGCCCTGCTGCACCGGTGG
TCTCTCGCCGAGTCGGCAGTACGAGGAGCACTTGCACGCTGAGACGGCGG
AAATGGCAGCTGAGGAGGGCCTTTACTAA
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Synonyms
Publications