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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr9 | genome | chr9:161853..164430 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO09G00330.1 vs.
Match: XP_005855230.1 (UDP-glucuronate decarboxylase [Nannochloropsis gaditana CCMP526]; EKU21132.1 UDP-glucuronate decarboxylase [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 627.9 bits (1618), Expect = 2.700e-176 Identity = 331/486 (68.11%), Postives = 359/486 (73.87%), Query Frame = 0
Query: 54 VGGAALAVGVAYVWPQLIEEYTGVKVVVKKTIGSSSSSKSCSGQNGGQGDA-----------------ITPALREVIQREVECQVSERVCSMNKA--QQAAGGRKN-----------------FFPPSAVLSESQRMRVLVTGGAGFVGSHLVDRLMEEGHEVIVLDNMFTGRKKNVAHWIGHPNFMLIVHDVVEPIMLE-----------------YNPIKTIKTSTMGTLNMLGLAKRVRARMLLTSTSEVYGDPQIHPQPESYWGNVNPIGPRACYDEGKRVAETMMYAYHNQGKVDVRVARIFNTFGPRMHPNDGRVVSNFIIQALQGKDITIYGEGQQTRSFQYVEDLVTGLIKLMNSDYGLPCNLGNPEEYTVKAFALLVKELVTGSRSSISYMPATKDDPAKRKPDITVAREVLDWQPRVPVREGLSKTVAYFRAELEETGEIVPTGPDAARPKPCCTGGLSPSRQYEEHLHAETAEMA 487
VG AL + V YV+ + + + +SSS G GG G ++ LR I+ EV ++ + K Q+A R +PP+A LSE QR R+LVTGGAGFVGSHLVDRLM EGHEVIV+DNMFTGRKKNVAHWIGHP+FMLIVHDVVEPI+LE YNPIKTIKTSTMGTLNMLGLAKRVRARMLLTSTSEVYGDPQIHPQPESYWGNVNPIGPRACYDEGKRVAETMMYAYHNQ VDVRVARIFNTFGPRMHPNDGRVVSNFIIQALQGKDITIYGEG QTRSFQYVEDLVTGL KLMNSDYGLP NLGNPEEYTVK FALLVKELV GS S+I +MPATKDDPAKRKPDI VA +VL WQPRVPVREGLSKTVAYFR+ELE+TGEIVPTGPDA RPKPCC+ LSPSR+YE+HL+AET A
Sbjct: 39 VGALALVISVNYVFGR------------EPLVLRASSSHVRGGDEGGNGGMQMLQHDGRQVESHKPVLVSEELRRTIKEEVRAEILAAMAEEEKKRRQEAPHARPGTRGDGERTVSRQEQLGQLYPPTATLSEGQRRRILVTGGAGFVGSHLVDRLMAEGHEVIVVDNMFTGRKKNVAHWIGHPHFMLIVHDVVEPILLEVDQIYHLACPASPPHYQYNPIKTIKTSTMGTLNMLGLAKRVRARMLLTSTSEVYGDPQIHPQPESYWGNVNPIGPRACYDEGKRVAETMMYAYHNQSSVDVRVARIFNTFGPRMHPNDGRVVSNFIIQALQGKDITIYGEGHQTRSFQYVEDLVTGLTKLMNSDYGLPVNLGNPEEYTVKDFALLVKELVVGSPSAIVHMPATKDDPAKRKPDIRVAMDVLGWQPRVPVREGLSKTVAYFRSELEDTGEIVPTGPDATRPKPCCSNVLSPSREYEDHLYAETMPAA 512
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO09G00330.1 ID=NO09G00330.1|Name=NO09G00330.1|organism=Nannochloropsis oceanica|type=mRNA|length=1479bp ATGTCCGGTCTGACTGAAGGTGTCAGAGGCAGCGTGGAGGACTTTAACCA GCAGCCAGGACTGGCACCGGCAGAAGCAGCAGCAGCAGGCATGCGGAACG GGGGACGCGCCTCGGATGGCACTTCTTCGTCGAAAGCAGCTCTGTGCGCT GCAGCCGCCGTAGGAGGGGCAGCCTTGGCTGTGGGGGTCGCGTACGTGTG GCCACAGCTTATTGAGGAGTATACAGGCGTTAAGGTTGTGGTAAAGAAGA CGATTGGCAGCAGCAGTAGCAGCAAGAGCTGCAGCGGGCAGAATGGGGGC CAGGGCGATGCAATCACCCCTGCCCTCCGCGAAGTCATCCAGCGGGAGGT TGAATGCCAAGTATCCGAGCGGGTGTGTTCCATGAACAAAGCCCAGCAAG CGGCGGGTGGTAGGAAGAATTTCTTTCCGCCTTCGGCTGTGTTGTCAGAG AGCCAGCGGATGCGTGTGTTGGTGACGGGAGGGGCGGGTTTCGTGGGGTC ACATCTGGTGGACCGACTGATGGAGGAAGGGCACGAGGTGATTGTTTTGG ACAACATGTTCACGGGGCGGAAGAAAAATGTGGCCCATTGGATCGGGCAC CCGAACTTTATGTTGATCGTCCACGACGTCGTGGAGCCCATCATGCTGGA GTACAACCCGATCAAGACCATCAAGACGAGCACGATGGGGACGTTAAACA TGCTGGGCCTGGCCAAGCGGGTGCGGGCGCGGATGCTATTGACGTCGACG AGTGAAGTGTATGGAGACCCGCAGATTCATCCCCAACCTGAGAGCTATTG GGGCAACGTGAACCCCATTGGTCCTCGGGCATGCTACGACGAAGGAAAAC GCGTTGCCGAGACCATGATGTACGCTTATCACAATCAAGGGAAGGTGGAT GTCCGGGTCGCGAGGATCTTCAATACGTTTGGTCCGAGGATGCATCCGAA CGATGGGAGGGTGGTCAGTAATTTCATCATTCAGGCGTTGCAAGGGAAAG ATATTACGATCTACGGGGAGGGGCAGCAGACGCGTTCGTTTCAGTATGTC GAGGACCTCGTCACGGGGCTCATCAAGCTCATGAACTCGGACTACGGCCT GCCGTGCAATCTAGGCAACCCGGAAGAGTACACCGTCAAGGCCTTCGCCC TCCTTGTCAAGGAGCTTGTCACGGGCTCCCGCAGTAGCATCAGCTACATG CCGGCCACCAAGGATGACCCTGCGAAGCGCAAGCCTGACATCACGGTGGC CAGGGAGGTGCTGGATTGGCAGCCCCGTGTTCCAGTGCGGGAAGGACTGA GCAAGACGGTGGCTTACTTTAGAGCCGAATTGGAGGAGACGGGTGAAATT GTCCCGACGGGCCCTGACGCCGCGCGCCCCAAGCCCTGCTGCACCGGTGG TCTCTCGCCGAGTCGGCAGTACGAGGAGCACTTGCACGCTGAGACGGCGG AAATGGCAGCTGAGGAGGGCCTTTACTAA back to topprotein sequence of NO09G00330.1 >NO09G00330.1-protein ID=NO09G00330.1-protein|Name=NO09G00330.1|organism=Nannochloropsis oceanica|type=polypeptide|length=493bp MSGLTEGVRGSVEDFNQQPGLAPAEAAAAGMRNGGRASDGTSSSKAALCA AAAVGGAALAVGVAYVWPQLIEEYTGVKVVVKKTIGSSSSSKSCSGQNGG QGDAITPALREVIQREVECQVSERVCSMNKAQQAAGGRKNFFPPSAVLSE SQRMRVLVTGGAGFVGSHLVDRLMEEGHEVIVLDNMFTGRKKNVAHWIGH PNFMLIVHDVVEPIMLEYNPIKTIKTSTMGTLNMLGLAKRVRARMLLTST SEVYGDPQIHPQPESYWGNVNPIGPRACYDEGKRVAETMMYAYHNQGKVD VRVARIFNTFGPRMHPNDGRVVSNFIIQALQGKDITIYGEGQQTRSFQYV EDLVTGLIKLMNSDYGLPCNLGNPEEYTVKAFALLVKELVTGSRSSISYM PATKDDPAKRKPDITVAREVLDWQPRVPVREGLSKTVAYFRAELEETGEI VPTGPDAARPKPCCTGGLSPSRQYEEHLHAETAEMAAEEGLY* back to topmRNA from alignment at chr9:161853..164430- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO09G00330.1 ID=NO09G00330.1|Name=NO09G00330.1|organism=Nannochloropsis oceanica|type=mRNA|length=2578bp|location=Sequence derived from alignment at chr9:161853..164430- (Nannochloropsis oceanica) ATGTCCGGTCTGACTGAAGGTGTCAGAGGCAGCGTGGTAGGCATGGCTCT
AGCCTCCTGGCAGGCCTTCATCCCCCGCAGACCCGAAATGCCCCAGCCCA
GCGATGCGCTCGACCAAAAACGAGTCCCCCCCGCCCTGATATCAACACAC
AATCCTTCCACACGCGCAGGAGGACTTTAACCAGCAGCCAGGACTGGCAC
CGGCAGAAGCAGCAGCAGCAGGCATGCGGAACGGGGGACGCGCCTCGGAT
GGCACTTCTTCGTCGAAAGCAGCTCTGTGCGCTGCAGCCGCCGTAGGAGG
GGCAGCCTTGGCTGTGGGGGTCGCGTACGTGTGGCCACAGCTTATTGAGG
AGTATACAGGCGTTAAGGTTGTGGTAAAGAAGACGATTGGCAGCAGCAGT
AGCAGCAAGAGCTGCAGCGGGCAGAATGGGGGCCAGGGCGATGCAATCAC
CCCTGCCCTCCGCGAAGTCATCCAGCGGGAGGTTGAATGCCAAGTATCCG
AGCGGGTGTGTTCCATGAACAAAGCCCAGCAAGCGGCGGGTGGTAGGAAG
AATTTCTTTCCGCCTTCGGCTGTGTTGTCAGAGAGCCAGCGGATGCGTGT
GTTGGTGACGGGAGGGGCGGGTTTCGTGGGGTCACATCTGGTGGACCGAC
TGATGGAGGAAGGGCACGAGGTGATTGTTTTGGACAACATGTTCACGGGG
CGGAAGAAAAATGTGGCCCATTGGATCGGGCACCCGAACTTTATGTTGAT
CGTCCACGACGTCGTGGAGCCCATCATGCTGGAGGTGGATCAGATCTACC
ACCTGGCTTGCCCTGCCTCCCCCCCCATTATCAGTACAACCCGATCAAGA
CCATCAAGACGAGCACGATGGGGACGTTAAACATGCTGGGCCTGGCCAAG
CGGGTGCGGGCGCGGATGCTATTGACGTCGACGAGTGAAGTGTATGGAGA
CCCGCAGGTACGCACGCACGCACGCACGCCCTCCCTCCCTCCCTCTCTCC
CTCCCTACCTCCCTTCCCCTCCCCTTCTATATCGCTCTTAGCCTTCAGCA
CTTCCTCTTTCTTCCAGATTCATCCCCAACCTGAGAGCTATTGGGGCAAC
GTGAACCCCATTGGTCCTCGGGCATGCTACGACGAAGGAAAACGCGTTGC
CGAGACCATGATGTACGCTTATCACAATCAAGGGAAGGTGGATGTCCGGG
TCGCGAGGATCTTCAATACGTTTGGTCCGAGGATGCATCCGAACGATGGG
AGGGTGGTCAGGTGGGTAGGGAGGGAGGGAGGGAAGGAAGGAGGGAAGGA
GGGAGGGAGGGGTTTTTGTGCTGGATCGATGGGAGGGTGAAAAGGTGGGG
AAGGAGGGAGGGAGAAAGGGAGGGAGGAAGGAAATGCGAGGAGACGAGCA
GCTTTCACTCATTTCATTCTTTTCATTCTCTTTGTGTCCGAATGCCTGCT
TGGTCCTTTATTTGCCCAGTAATTTCATCATTCAGGCGTTGCAAGGGAAA
GATATTACGATCTACGGGGAGGGGCAGCAGACGCGTTCGTTTCAGGTACA
TGGGTATATATATATATATATATATATATATATATGTGTGTGTGTGTGTG
TGTGTGTGTGTGTTTGTGTATGTGTGTGTATGTCTGTATATGTCTTGTGT
CTGTGTGTCTGTGTGTATCTATATTATATCTATCTTCCCTTGTAGCCATC
AGTAGAGAGCGGGACCATGCGTGTGATGCGGTGGGTTTCCTCACCCTCCT
TCCCTCCCTTCCTTCCTCCCTCCCTCCCTTCCTTCCTTCCTTCCTTCCTT
CCTTCCTCCCTCAGTATGTCGAGGACCTCGTCACGGGGCTCATCAAGCTC
ATGAACTCGGACTACGGCCTGCCGTGCAATCTAGGCAACCCGGAAGAGTA
CACCGTCAAGGCCTTCGCCCTCCTTGTCAAGGAGCTTGTCACGGGCTCCC
GCAGTAGCATCAGCTACATGCCGGCCACCAAGGATGACCCTGCGAAGCGC
AAGCCTGACATCACGGTGGCCAGGGAGGTGCTGGATTGGCAGCCCCGTGT
TCCAGTGCGGGAAGGACTGAGCAAGACGGTGGCTTACTTTAGAGCCGAAT
TGGAGGAGACGGTAATGCGGAGGACAGGGCGGGAGGGAGGGCGGGAAAGA
GAGAGGGAGGGAGGGAGGGTGGGTCCTTGAAGCGAATGATGGCGCTGGTA
GAGGGAGGGAAGGAGGGAGAGAGGGAAGAAGGGGGGGAGAGGGCACGGAG
AGTGTTTTGTGCGTGCTTATTGTAGATCCTGAAGTGTCCGCTTGCTGTCT
TCATCCCTTTCATCTCTCATCTCTCGCACGTTTTCCTCTTGTGAACGTCA
TTCACCCACTCCACCGGCTCAGATCTTTCACAGCATTGATAACCCACTTT
ACCCCCTCCTTTTTTCTGCATCTTAATCAAATCATTTCAGGGTGAAATTG
TCCCGACGGGCCCTGACGCCGCGCGCCCCAAGCCCTGCTGCACCGGTGGT
CTCTCGCCGAGTCGGCAGTACGAGGAGCACTTGCACGCTGAGACGGCGGA
AATGGCAGCTGAGGAGGGCCTTTACTAA back to topCoding sequence (CDS) from alignment at chr9:161853..164430- >NO09G00330.1 ID=NO09G00330.1|Name=NO09G00330.1|organism=Nannochloropsis oceanica|type=CDS|length=1479bp|location=Sequence derived from alignment at chr9:161853..164430- (Nannochloropsis oceanica) ATGTCCGGTCTGACTGAAGGTGTCAGAGGCAGCGTGGAGGACTTTAACCA GCAGCCAGGACTGGCACCGGCAGAAGCAGCAGCAGCAGGCATGCGGAACG GGGGACGCGCCTCGGATGGCACTTCTTCGTCGAAAGCAGCTCTGTGCGCT GCAGCCGCCGTAGGAGGGGCAGCCTTGGCTGTGGGGGTCGCGTACGTGTG GCCACAGCTTATTGAGGAGTATACAGGCGTTAAGGTTGTGGTAAAGAAGA CGATTGGCAGCAGCAGTAGCAGCAAGAGCTGCAGCGGGCAGAATGGGGGC CAGGGCGATGCAATCACCCCTGCCCTCCGCGAAGTCATCCAGCGGGAGGT TGAATGCCAAGTATCCGAGCGGGTGTGTTCCATGAACAAAGCCCAGCAAG CGGCGGGTGGTAGGAAGAATTTCTTTCCGCCTTCGGCTGTGTTGTCAGAG AGCCAGCGGATGCGTGTGTTGGTGACGGGAGGGGCGGGTTTCGTGGGGTC ACATCTGGTGGACCGACTGATGGAGGAAGGGCACGAGGTGATTGTTTTGG ACAACATGTTCACGGGGCGGAAGAAAAATGTGGCCCATTGGATCGGGCAC CCGAACTTTATGTTGATCGTCCACGACGTCGTGGAGCCCATCATGCTGGA GTACAACCCGATCAAGACCATCAAGACGAGCACGATGGGGACGTTAAACA TGCTGGGCCTGGCCAAGCGGGTGCGGGCGCGGATGCTATTGACGTCGACG AGTGAAGTGTATGGAGACCCGCAGATTCATCCCCAACCTGAGAGCTATTG GGGCAACGTGAACCCCATTGGTCCTCGGGCATGCTACGACGAAGGAAAAC GCGTTGCCGAGACCATGATGTACGCTTATCACAATCAAGGGAAGGTGGAT GTCCGGGTCGCGAGGATCTTCAATACGTTTGGTCCGAGGATGCATCCGAA CGATGGGAGGGTGGTCAGTAATTTCATCATTCAGGCGTTGCAAGGGAAAG ATATTACGATCTACGGGGAGGGGCAGCAGACGCGTTCGTTTCAGTATGTC GAGGACCTCGTCACGGGGCTCATCAAGCTCATGAACTCGGACTACGGCCT GCCGTGCAATCTAGGCAACCCGGAAGAGTACACCGTCAAGGCCTTCGCCC TCCTTGTCAAGGAGCTTGTCACGGGCTCCCGCAGTAGCATCAGCTACATG CCGGCCACCAAGGATGACCCTGCGAAGCGCAAGCCTGACATCACGGTGGC CAGGGAGGTGCTGGATTGGCAGCCCCGTGTTCCAGTGCGGGAAGGACTGA GCAAGACGGTGGCTTACTTTAGAGCCGAATTGGAGGAGACGGGTGAAATT GTCCCGACGGGCCCTGACGCCGCGCGCCCCAAGCCCTGCTGCACCGGTGG TCTCTCGCCGAGTCGGCAGTACGAGGAGCACTTGCACGCTGAGACGGCGG AAATGGCAGCTGAGGAGGGCCTTTACTAA back to top
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