NO08G04070, NO08G04070 (gene) Nannochloropsis oceanica

Overview
NameNO08G04070
Unique NameNO08G04070
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2681
Alignment locationchr8:1162055..1164735 -

Link to JBrowse

Properties
Property NameValue
DescriptionGolgi apparatus membrane protein TVP15
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:1162055..1164735 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
Vocabulary: INTERPRO
TermDefinition
IPR011992EF-hand-dom_pair
IPR013714Golgi_TVP15
IPR002048EF_hand_dom
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO08G04070 vs. NCBI_GenBank
Match: EWM26875.1 (Golgi apparatus membrane protein TVP15 [Nannochloropsis gaditana])

HSP 1 Score: 273.1 bits (697), Expect = 8.800e-70
Identity = 139/186 (74.73%), Postives = 161/186 (86.56%), Query Frame = 0
Query:    1 MMAPEETKVAAGSPGSASNLDKPNTSAKVKQMTWLETLRRDGCLPLKTIGFFTGMALTIIACLTFASKLLDLNVVGAINQVWLAIFGLTMMLLEASTSTNFVSKKVSRWLNENMKILTYMTGRGLFYCFLGTIELGFWFSTLHLVIGIILCVLGVVTIFVGFALGMKLRSIRRDLAREDDARKTFQ 187
            M+  EETK +  +  S        TS KV Q++WL+ LRR+GCLPLKT+GF TG+ALT+IACLTFA+KLLDLNVVGAINQVWLAIFGL MMLLEAS+STNF+S++VSRWLNENMKILTYMTGRGLFY F+GT+ELGFWFSTLHLVIGIILC LG VTIFVG+ALGMKLRS+RRD+A+EDDAR+  Q
Sbjct:    1 MLNAEETKTSGAADASHGGKKANTTSTKVNQVSWLQRLRREGCLPLKTVGFLTGLALTVIACLTFAAKLLDLNVVGAINQVWLAIFGLIMMLLEASSSTNFLSQRVSRWLNENMKILTYMTGRGLFYIFVGTLELGFWFSTLHLVIGIILCSLGGVTIFVGWALGMKLRSLRRDMAQEDDARRVSQ 186          
BLAST of NO08G04070 vs. NCBI_GenBank
Match: CBJ30176.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 100.1 bits (248), Expect = 1.000e-17
Identity = 68/237 (28.69%), Postives = 119/237 (50.21%), Query Frame = 0
Query:    5 EETKVAAGSPGSASNLDKPNTSAKVKQMTWLETLRRDGCLPLKTIGFFTGMALTIIACLTFASKLLDLNVVGAINQVWLAIFGLTMMLLEASTSTNFVSKKVSRWLNENMKILTYMTGRGLFYCFLGTIELGFWFSTLHLVIGIILCVLGVVTIFVGFALGMKLRSIRRDLAREDDARKTFQDFDEDQDGRLSTSELARLCHSLGSKLTHNELQAAVTTLDVNRDGYIQEEEFLRWW 242
            E +K+ A +   A+       +AK+K M       RDG + +K + +  G+ L +    +F      L+ V A+  +++  FG  ++LLEA +S   + KK+   +++     T + GRG F+ F+GT+ L  W   + +++G+ L ++G   I+ G      L ++  ++   +     F+ FD +QDG L  +EL  L  SLG+ L   E++AA   +D + DG I   EF  WW
Sbjct:   21 ENSKLMATAVAGAAMEAAKTEAAKIKNMV---LNMRDGPVSIKILSYIAGILLVVTGFFSFFGSFFTLHPVDAVVHLYMFAFGWAILLLEARSS--ILPKKIVYNIHKYCAFTTVVWGRGAFFIFVGTLALAQWV-FISILVGLYLVIIGAGMIYWGQEAYKNLDALHGEMKNPEVVEGMFRKFDHNQDGVLDVTELGNLLESLGAMLRPTEVEAACIIMDTDNDGKISLAEFQGWW 251          
BLAST of NO08G04070 vs. NCBI_GenBank
Match: GAX18629.1 (hypothetical protein FisN_10Hh163 [Fistulifera solaris])

HSP 1 Score: 96.3 bits (238), Expect = 1.500e-16
Identity = 58/212 (27.36%), Postives = 108/212 (50.94%), Query Frame = 0
Query:   35 LETLRRDGCLPLKTIGFFTGMALTIIACLTFASKLLDLNVVGAINQVWLAIFGLTMMLLEASTSTNFVSKKVSRWLNENMKILTYMTGRGLFYCFLGTIELGFWFSTLHLVIGIILCVLGVVTIFVGFALGMKLRSIRRDLAREDDARKTFQDFDEDQDGRLSTSELARLCHSLGSKLTHNELQAAVTTLDVNRDGYIQEEEFLRWWRGDAE 247
            ++  +R+G L  + +GF  G+A+ +   L    +    +   ++  V+  +FG+ ++ ++A       S+K+  W++   K L Y  GRGLF+ F+GT+++    + L   +G  +  +GVV + VG A   ++R +R  +  E   ++ +++ D + DG L   EL    +  G  +T NE+ A    LD N D  I  EEF  WW  +++
Sbjct:   37 IQQAQREGPLTFRILGFLGGLAMIVSNGLAILERFFSFSFARSLMAVYGVVFGVIIVFMDAPFPI-ICSQKIQTWIHSYAKFLDYTWGRGLFFFFVGTLQVSN-VNMLDWAVGGFMIFVGVVAMGVGMATANQMRLVRFAVKDETTLKEKWKEHDANGDGSLDVKELTAFVNDAGVTMTRNEIAAFYLALDKNFDQKIAYEEFYAWWTRESD 246          
BLAST of NO08G04070 vs. NCBI_GenBank
Match: GAX17300.1 (hypothetical protein FisN_10Lh163 [Fistulifera solaris])

HSP 1 Score: 90.9 bits (224), Expect = 6.200e-15
Identity = 57/212 (26.89%), Postives = 107/212 (50.47%), Query Frame = 0
Query:   35 LETLRRDGCLPLKTIGFFTGMALTIIACLTFASKLLDLNVVGAINQVWLAIFGLTMMLLEASTSTNFVSKKVSRWLNENMKILTYMTGRGLFYCFLGTIELGFWFSTLHLVIGIILCVLGVVTIFVGFALGMKLRSIRRDLAREDDARKTFQDFDEDQDGRLSTSELARLCHSLGSKLTHNELQAAVTTLDVNRDGYIQEEEFLRWWRGDAE 247
            ++  +++G L  + +GF  G+A+ +   L    +    +   ++  V+  IFG+ ++ ++A       S+K+   ++   K L Y  GRGLF+ F+GT+++    + L   +G  +  +GVV + VG A   ++R +R  +  E   ++ +++ D + DG L   EL    +  G  +T NE+ A    LD N D  I  EEF  WW  +++
Sbjct:   37 IQQAQKEGPLTFRILGFLGGLAMIVSNGLAILERFFSFSFARSLMAVYGVIFGVIIVFMDAPFPI-ICSQKIQTGIHSYAKFLDYTWGRGLFFFFVGTLQVSN-VNMLDWAVGGFMIFVGVVAMGVGMATANQMRLVRFAVKDESTLKQKWKEHDANGDGSLDVKELTAFVNDAGVTMTRNEIAAFYLALDKNFDQRIAYEEFYAWWTRESD 246          
BLAST of NO08G04070 vs. NCBI_GenBank
Match: XP_009037623.1 (hypothetical protein AURANDRAFT_64743 [Aureococcus anophagefferens] >EGB07625.1 hypothetical protein AURANDRAFT_64743 [Aureococcus anophagefferens])

HSP 1 Score: 85.5 bits (210), Expect = 2.600e-13
Identity = 68/246 (27.64%), Postives = 117/246 (47.56%), Query Frame = 0
Query:   12 GSPGSASNLDKPNTSAKV-----KQMTWLETLRRDGCLPLKTIGFFTGMALTIIACLTFASKLLDLNVVGAINQVWLAIFGLTMMLLEA-STSTNFVSKK----VSRW---LNENMKILTYMTGRGLFYCFLGTIELGFWFSTLHLVIGIILCVLGVVTIFVGFALGMKLRSIRRDLAREDDARKTFQDFDEDQDGRLSTSELARLCHSLGSKLTHNELQAAVTTLDVNRDGYIQEEEFLRWWRGD 245
            G  G  S +D    +A +     +Q   L+    +G + L T+G    +   +++CL     ++ L+   A+  V+    GL ++ LE    +  F        + RW   L     +LT +TGR L Y F+G++ L    S L  ++G     +G   ++V  +   KLR +    A E++    F   D D+DG+L+ SEL  LC + G+ L   E+++A+  LD +  G +  EEF+ W++GD
Sbjct:    5 GEYGGVSTVDTSAVAASIGAQVSQQAQELKRSVVNGSVELSTLGSIGAVLSVVVSCLNVLGNIVKLSPTRAVLMVYCFGGGLALLALEGMHNAPPFAPPSALAFLRRWKLKLRTEAHVLTTLTGRSLGYVFVGSLLLADGGSWLGALVGFYCVFVGGAMLYVARSAVAKLRDLLPG-ASEEELLAQFDAHDADRDGKLAGSELGALCAACGAALAPREVESALRILDTDGSGLVDREEFVAWFKGD 249          
BLAST of NO08G04070 vs. NCBI_GenBank
Match: XP_014154214.1 (hypothetical protein SARC_07325 [Sphaeroforma arctica JP610] >KNC80312.1 hypothetical protein SARC_07325 [Sphaeroforma arctica JP610])

HSP 1 Score: 84.7 bits (208), Expect = 4.400e-13
Identity = 58/184 (31.52%), Postives = 89/184 (48.37%), Query Frame = 0
Query:   69 LLDLNVVGAINQVWLAIFGLTMMLLEASTSTNFVSKKVSRWLNENMKILTYMTGRGLFYCFLGTIELGFWFSTLHLVIGIILCVLGVVTIFVGFALGMKLRSIRRDLAREDDARKTFQDFDEDQDGRLSTSELARLCHSLGSKLTHNELQAAV-----------TTLDVNRDGYIQEEEFLRWW 242
            L+ L+ +  +   +   FG  ++ LE   S  F+ K     +  N   LT + GR  FY F+GT+ L  W   + ++ G +L   G+V +  G     KL S++R++    + R+ F   D D +G L T E+A LC SLG+ L+  EL+ A+             LD N DG +  EEF  WW
Sbjct:   13 LIRLSPITMVIYAYCVFFGFVILALE--VSPRFMPKSWVVAVRTNALFLTRLHGRAFFYIFVGTLMLAQW-HWMQMMSGGLLIFTGIVMMISGGVANKKLNSLKREMTDPQEVRENFYAHDLDGNGALDTKEVAALCASLGTVLSRVELERALMCPSNNSLTFQQLLDSNHDGMVSYEEFYNWW 193          
BLAST of NO08G04070 vs. NCBI_GenBank
Match: GBG26849.1 (Calmodulin [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 73.6 bits (179), Expect = 1.000e-9
Identity = 61/207 (29.47%), Postives = 90/207 (43.48%), Query Frame = 0
Query:   42 GCLPLKTIGFFTGMALTIIACLTFASKLLDLNVVGAINQVWLAIFGLTMMLLEASTSTNFVSKKVSRWLNENMKILTYMTGRGLFYCFLGTIELGFWFSTLHLVIGIILCVLGVVTIFVGFALGMKLRSIRRDLAR--EDD---ARKTFQDFDEDQDGRLSTSELARLCHSLGSKLTHNELQAAVTTLDVNRDGYIQEEEFLRWWRG 244
            G +PLK I   +             +    ++ +  I  ++ A F    +LLE +   +     +  W+N  +K+LT + GRGLFY F G I L         + G  L   G+  + V      KL  +   + +   DD    R+ F  +D+D +G LS  ELA  C  LG+    NEL A    LD +  G +  EEF RWW G
Sbjct:   38 GPVPLKGICLVSCCVAIAFDAFALIADFFTIHPMKFILTLYAATFAFLGLLLEFN---HMYCGPLKAWINVWLKLLTRVWGRGLFYIFAGGIHLSL-KGLFGYLCGFTLLGSGIACLIVSRVASRKLTKLHDRIVQGHTDDLVYVRQVFNRYDKDNNGSLSVPELAACCKELGTDFAANELVAIFEYLDKDFSGKLSYEEFERWWTG 240          
BLAST of NO08G04070 vs. NCBI_GenBank
Match: XP_024173169.1 (probable calcium-binding protein CML27 [Rosa chinensis] >PRQ15911.1 putative EF-hand domain pair protein [Rosa chinensis])

HSP 1 Score: 64.7 bits (156), Expect = 4.700e-7
Identity = 31/79 (39.24%), Postives = 50/79 (63.29%), Query Frame = 0
Query:  179 DDARKTFQDFDEDQDGRLSTSELARLCHSLGSKLTHNELQAAVTTLDVNRDGYIQEEEFLRWW----RGDAELKKPIEV 254
            D+ R+ F+ FD + DG++STSEL  +  +LGS +  +ELQ  +  LD +RDG+I  +EF  +W     G +ELK+  ++
Sbjct:   20 DEVRRVFKSFDANGDGKISTSELGNVLEALGSNVPEDELQRVMVDLDTDRDGFICLDEFNAFWVAGDGGSSELKEAFDL 98          
The following BLAST results are available for this feature:
BLAST of NO08G04070 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 8
Match NameE-valueIdentityDescription
EWM26875.18.800e-7074.73Golgi apparatus membrane protein TVP15 [Nannochlor... [more]
CBJ30176.11.000e-1728.69conserved unknown protein [Ectocarpus siliculosus][more]
GAX18629.11.500e-1627.36hypothetical protein FisN_10Hh163 [Fistulifera sol... [more]
GAX17300.16.200e-1526.89hypothetical protein FisN_10Lh163 [Fistulifera sol... [more]
XP_009037623.12.600e-1327.64hypothetical protein AURANDRAFT_64743 [Aureococcus... [more]
XP_014154214.14.400e-1331.52hypothetical protein SARC_07325 [Sphaeroforma arct... [more]
GBG26849.11.000e-929.47Calmodulin [Aurantiochytrium sp. FCC1311][more]
XP_024173169.14.700e-739.24probable calcium-binding protein CML27 [Rosa chine... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G04070.2NO08G04070.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO08G04070.1NO08G04070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583276gene_3748Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100576g1gene3665Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G04070.2NO08G04070.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO08G04070.1NO08G04070.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G04070 ID=NO08G04070|Name=NO08G04070|organism=Nannochloropsis oceanica|type=gene|length=2681bp
ATACACTGCCCGAGATTTGTTCCTCCTGCGTTAACAAAAATAATTTACCA
AAGTTTTCTTGGCCATGTCCCTCCCTTTCCTTCTCTCCTATTTTCATGAG
CTGATTATAATATACTCGGTCCTTTTTGAGATCGTTATACTCCCGCTCAC
GTGCCACTCCTACCTACCTCCCCATCCCCATCCCCCAACTATGGTGGTCT
AATGTGACTAAACTACTGAAAATACTTCACACGATGCAAACCCAAAATAC
CATGCACCCTTCCTGGATATATTAAGCCTTACCCATGCCGTCCGCATGCA
CGTTGTATGATACTGTGATGAAGAAAGACTCTTAAGTGGGGCTCATGTTC
TAGTTCTACATATCAATACTGTAGAACAAACTACACGACCACAAAGAAAG
GACTCGACAGAAGCAGACAGGACGATGAATTCCTTCTCCGCACTCACTTC
TGTCACTCTTTCACCCCCCCAAAGCAACTACAGCAACACACAGCCACCAT
CTCCAAGTCAAGGCAAGTATGATGGCCCCTGAAGAGACAAAGGTCGCGGC
CGGCAGTCCCGGAAGCGCCAGCAATCTGGACAAACCCAACACTTCAGCCA
AGGTACGTATAGCGGCGACAGGAGATTCCACATTTCGCCCTTTCCCCACT
CTTAAGGCACGAATGTCTGTGTCTTTGCCCATGTGGGGTTGCTGGTGTTC
ATTTATTGTCCGACGGCCCGCAATATCCCTTGTTACCATGCATGCGGGCG
CATAAACCTCTTTTTCCTTAGTTTCATTTGTGAGAATGCTTGCGAAAGAA
ATCGTGAATGTCCACCTTTTTCACCTGTGCTTTCAACCTTGCGAGTGCTT
ACACCTGCACTAGCACACAATCAACCCTCCCTCCCTACTCCCCTCCATCA
TTCGCCTTGAAGGTAAAGCAAATGACGTGGCTGGAGACCCTTCGTCGAGA
TGGATGTCTTCCCCTGAAAACTATTGGCTTCTTCACTGgtgcgtgtagaa
aggagagggaggagaggaagaaagaatgggggagggagagaggagtagaa
actatgctggtgttatctgcatactgcctgcgagataaattactctacat
tcaaatctttcctgctctccttccttcttccatgtgaccgttcttagGCA
TGGCTCTTACTATTATTGCCTGCCTGACTTTCGCTTCCAAGCTCTTGGAC
TTGAATGTCGTGGGGGCGATCAACCAGgtgagggagggagggagggaggg
agggagggagggagtgagtgagtgagggagtgattgattgaatggaagag
tgagtgtgtggagttttggggaaaggcgtaagataagaaaagaacaggtt
gacatgtagtcgtccaccccttagtattaacgacgtatttgtgaatcata
ctttctcttccgtccaaccctccctccccctgtctcttgcagGTTTGGCT
TGCCATCTTCGGCCTAACGATGATGCTGCTCGAGGCATCTACCAGTACCA
ACTTCGTGTCGAAAAAGGTTTCTCGATGGTTAAATGAGAATATGAAGATA
TTGACATACATGACTGGACGCGGGTTGTTCTATTGCTTCCTCGGCACGgt
gagggcgggagtgagggagtgagtgtaatcttcatcctttttgcgcgcgt
cgctgattctgtatgattctcttacccaccttctttccctcccctcttgt
ccttcagATCGAGCTAGGCTTCTGGTTCTCTACCCTCCACCTGGTTATTG
GCATCATCCTCTGCGTCTTGGGCGTAGTAACGATCTTTGTTGGATTTGCC
TTGGGGATGAAGCTTCGGTCCATCCGTCGGGATTTAGCCAGGGAGGACGA
CGCGCGTAAGgtacgtaaaacctcaaagcagcagcatgatgtactggatt
ctcttttctctccctgtcatgtgttgttggattagcgcttttttgcctca
tcatctatcccggcattctcatttgtccttttctctctctccctccctcc
ctccctccctccctccctccctccctccctccctccctcccttcctccct
cccttcctccctccctccctccctccctcccttcctccctccctgcagAC
CTTCCAAGATTTCGATGAAGACCAAGACGGACGTCTGTCAACCTCCGAGC
TCGCTCGGCTCTGCCATTCCTTGGGGAGTAAGCTGACCCACAACGAATTA
CAAGCAGCCGTTACGACACTGGACGTTAACAGGGACGGTTATATCCAAGA
GGAGGAGTTCTTGCGGTGGTGGCGGGGGGATGCGGAGCTCAAGAAACCGA
TCGAGGTGTGAGATTATGAGGCGGGAGGGAGGGGCCGAAGGAAGGCAGGG
ATTTGTGTGTATAGATGGGTGTTCTGGCGTGGTGTGTGTGTGTCGGTGGG
TGTGCATTGTGTGCATTGAAGGGGAAGGGAATGCTGGATAGAAAGAGCAA
AAGTGAATCAGAGAGAGATTGATCAAGCAATGAAAATCATGAAGGCTTAT
GCATCGATGTGCCCCTGGTCACGGCACAAAGACATGAGGTTGACAGATTT
TCAACCACATAAATACGGCGAAAGAAAAGCAGATTGAAAATGGGCGTGAC
AAACCAAAAGCTCTTACCGAGATACAGGAAGCCAAACCAGAATGAATTAT
GTGACCAGCAAAAGAAAATTGTACAGGTTTT
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protein sequence of NO08G04070.2

>NO08G04070.2-protein ID=NO08G04070.2-protein|Name=NO08G04070.2|organism=Nannochloropsis oceanica|type=polypeptide|length=261bp
MSTFFTCAFNLASAYTCTSTQSTLPPYSPPSFALKVKQMTWLETLRRDGC
LPLKTIGFFTGMALTIIACLTFASKLLDLNVVGAINQVWLAIFGLTMMLL
EASTSTNFVSKKVSRWLNENMKILTYMTGRGLFYCFLGTIELGFWFSTLH
LVIGIILCVLGVVTIFVGFALGMKLRSIRRDLAREDDARKTFQDFDEDQD
GRLSTSELARLCHSLGSKLTHNELQAAVTTLDVNRDGYIQEEEFLRWWRG
DAELKKPIEV*
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protein sequence of NO08G04070.1

>NO08G04070.1-protein ID=NO08G04070.1-protein|Name=NO08G04070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=254bp
MMAPEETKVAAGSPGSASNLDKPNTSAKVKQMTWLETLRRDGCLPLKTIG
FFTGMALTIIACLTFASKLLDLNVVGAINQVWLAIFGLTMMLLEASTSTN
FVSKKVSRWLNENMKILTYMTGRGLFYCFLGTIELGFWFSTLHLVIGIIL
CVLGVVTIFVGFALGMKLRSIRRDLAREDDARKTFQDFDEDQDGRLSTSE
LARLCHSLGSKLTHNELQAAVTTLDVNRDGYIQEEEFLRWWRGDAELKKP
IEV*
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Synonyms
Publications