NO08G04070.2, NO08G04070.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G04070.2
Unique NameNO08G04070.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1960
Alignment locationchr8:1162055..1164735 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:1162055..1164735 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G04070.2 vs.
Match: EWM26875.1 (Golgi apparatus membrane protein TVP15 [Nannochloropsis gaditana])

HSP 1 Score: 264.2 bits (674), Expect = 4.200e-67
Identity = 131/159 (82.39%), Postives = 150/159 (94.34%), Query Frame = 0 
Query:   35 KVKQMTWLETLRRDGCLPLKTIGFFTGMALTIIACLTFASKLLDLNVVGAINQVWLAIFGLTMMLLEASTSTNFVSKKVSRWLNENMKILTYMTGRGLFYCFLGTIELGFWFSTLHLVIGIILCVLGVVTIFVGFALGMKLRSIRRDLAREDDARKTFQ 194
            KV Q++WL+ LRR+GCLPLKT+GF TG+ALT+IACLTFA+KLLDLNVVGAINQVWLAIFGL MMLLEAS+STNF+S++VSRWLNENMKILTYMTGRGLFY F+GT+ELGFWFSTLHLVIGIILC LG VTIFVG+ALGMKLRS+RRD+A+EDDAR+  Q
Sbjct:   28 KVNQVSWLQRLRREGCLPLKTVGFLTGLALTVIACLTFAAKLLDLNVVGAINQVWLAIFGLIMMLLEASSSTNFLSQRVSRWLNENMKILTYMTGRGLFYIFVGTLELGFWFSTLHLVIGIILCSLGGVTIFVGWALGMKLRSLRRDMAQEDDARRVSQ 186
The following BLAST results are available for this feature:
BLAST of NO08G04070.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26875.14.200e-6782.39Golgi apparatus membrane protein TVP15 [Nannochlor... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G04070NO08G04070Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G04070.2NO08G04070.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G04070.2.cds1NO08G04070.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G04070.2.cds2NO08G04070.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G04070.2.cds3NO08G04070.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G04070.2.cds4NO08G04070.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G04070.2.cds5NO08G04070.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G04070.2 ID=NO08G04070.2|Name=NO08G04070.2|organism=Nannochloropsis oceanica|type=mRNA|length=1960bp
ATACACTGCCCGAGATTTGTTCCTCCTGCGTTAACAAAAATAATTTACCA
AAGTTTTCTTGGCCATGTCCCTCCCTTTCCTTCTCTCCTATTTTCATGAG
CTGATTATAATATACTCGGTCCTTTTTGAGATCGTTATACTCCCGCTCAC
GTGCCACTCCTACCTACCTCCCCATCCCCATCCCCCAACTATGGTGGTCT
AATGTGACTAAACTACTGAAAATACTTCACACGATGCAAACCCAAAATAC
CATGCACCCTTCCTGGATATATTAAGCCTTACCCATGCCGTCCGCATGCA
CGTTGTATGATACTGTGATGAAGAAAGACTCTTAAGTGGGGCTCATGTTC
TAGTTCTACATATCAATACTGTAGAACAAACTACACGACCACAAAGAAAG
GACTCGACAGAAGCAGACAGGACGATGAATTCCTTCTCCGCACTCACTTC
TGTCACTCTTTCACCCCCCCAAAGCAACTACAGCAACACACAGCCACCAT
CTCCAAGTCAAGGCAAGTATGATGGCCCCTGAAGAGACAAAGGTCGCGGC
CGGCAGTCCCGGAAGCGCCAGCAATCTGGACAAACCCAACACTTCAGCCA
AGGTACGTATAGCGGCGACAGGAGATTCCACATTTCGCCCTTTCCCCACT
CTTAAGGCACGAATGTCTGTGTCTTTGCCCATGTGGGGTTGCTGGTGTTC
ATTTATTGTCCGACGGCCCGCAATATCCCTTGTTACCATGCATGCGGGCG
CATAAACCTCTTTTTCCTTAGTTTCATTTGTGAGAATGCTTGCGAAAGAA
ATCGTGAATGTCCACCTTTTTCACCTGTGCTTTCAACCTTGCGAGTGCTT
ACACCTGCACTAGCACACAATCAACCCTCCCTCCCTACTCCCCTCCATCA
TTCGCCTTGAAGGTAAAGCAAATGACGTGGCTGGAGACCCTTCGTCGAGA
TGGATGTCTTCCCCTGAAAACTATTGGCTTCTTCACTGGCATGGCTCTTA
CTATTATTGCCTGCCTGACTTTCGCTTCCAAGCTCTTGGACTTGAATGTC
GTGGGGGCGATCAACCAGGTTTGGCTTGCCATCTTCGGCCTAACGATGAT
GCTGCTCGAGGCATCTACCAGTACCAACTTCGTGTCGAAAAAGGTTTCTC
GATGGTTAAATGAGAATATGAAGATATTGACATACATGACTGGACGCGGG
TTGTTCTATTGCTTCCTCGGCACGATCGAGCTAGGCTTCTGGTTCTCTAC
CCTCCACCTGGTTATTGGCATCATCCTCTGCGTCTTGGGCGTAGTAACGA
TCTTTGTTGGATTTGCCTTGGGGATGAAGCTTCGGTCCATCCGTCGGGAT
TTAGCCAGGGAGGACGACGCGCGTAAGACCTTCCAAGATTTCGATGAAGA
CCAAGACGGACGTCTGTCAACCTCCGAGCTCGCTCGGCTCTGCCATTCCT
TGGGGAGTAAGCTGACCCACAACGAATTACAAGCAGCCGTTACGACACTG
GACGTTAACAGGGACGGTTATATCCAAGAGGAGGAGTTCTTGCGGTGGTG
GCGGGGGGATGCGGAGCTCAAGAAACCGATCGAGGTGTGAGATTATGAGG
CGGGAGGGAGGGGCCGAAGGAAGGCAGGGATTTGTGTGTATAGATGGGTG
TTCTGGCGTGGTGTGTGTGTGTCGGTGGGTGTGCATTGTGTGCATTGAAG
GGGAAGGGAATGCTGGATAGAAAGAGCAAAAGTGAATCAGAGAGAGATTG
ATCAAGCAATGAAAATCATGAAGGCTTATGCATCGATGTGCCCCTGGTCA
CGGCACAAAGACATGAGGTTGACAGATTTTCAACCACATAAATACGGCGA
AAGAAAAGCAGATTGAAAATGGGCGTGACAAACCAAAAGCTCTTACCGAG
ATACAGGAAGCCAAACCAGAATGAATTATGTGACCAGCAAAAGAAAATTG
TACAGGTTTT
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protein sequence of NO08G04070.2

>NO08G04070.2-protein ID=NO08G04070.2-protein|Name=NO08G04070.2|organism=Nannochloropsis oceanica|type=polypeptide|length=261bp
MSTFFTCAFNLASAYTCTSTQSTLPPYSPPSFALKVKQMTWLETLRRDGC
LPLKTIGFFTGMALTIIACLTFASKLLDLNVVGAINQVWLAIFGLTMMLL
EASTSTNFVSKKVSRWLNENMKILTYMTGRGLFYCFLGTIELGFWFSTLH
LVIGIILCVLGVVTIFVGFALGMKLRSIRRDLAREDDARKTFQDFDEDQD
GRLSTSELARLCHSLGSKLTHNELQAAVTTLDVNRDGYIQEEEFLRWWRG
DAELKKPIEV*
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mRNA from alignment at chr8:1162055..1164735-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G04070.2 ID=NO08G04070.2|Name=NO08G04070.2|organism=Nannochloropsis oceanica|type=mRNA|length=2681bp|location=Sequence derived from alignment at chr8:1162055..1164735- (Nannochloropsis oceanica)
ATACACTGCCCGAGATTTGTTCCTCCTGCGTTAACAAAAATAATTTACCA
AAGTTTTCTTGGCCATGTCCCTCCCTTTCCTTCTCTCCTATTTTCATGAG
CTGATTATAATATACTCGGTCCTTTTTGAGATCGTTATACTCCCGCTCAC
GTGCCACTCCTACCTACCTCCCCATCCCCATCCCCCAACTATGGTGGTCT
AATGTGACTAAACTACTGAAAATACTTCACACGATGCAAACCCAAAATAC
CATGCACCCTTCCTGGATATATTAAGCCTTACCCATGCCGTCCGCATGCA
CGTTGTATGATACTGTGATGAAGAAAGACTCTTAAGTGGGGCTCATGTTC
TAGTTCTACATATCAATACTGTAGAACAAACTACACGACCACAAAGAAAG
GACTCGACAGAAGCAGACAGGACGATGAATTCCTTCTCCGCACTCACTTC
TGTCACTCTTTCACCCCCCCAAAGCAACTACAGCAACACACAGCCACCAT
CTCCAAGTCAAGGCAAGTATGATGGCCCCTGAAGAGACAAAGGTCGCGGC
CGGCAGTCCCGGAAGCGCCAGCAATCTGGACAAACCCAACACTTCAGCCA
AGGTACGTATAGCGGCGACAGGAGATTCCACATTTCGCCCTTTCCCCACT
CTTAAGGCACGAATGTCTGTGTCTTTGCCCATGTGGGGTTGCTGGTGTTC
ATTTATTGTCCGACGGCCCGCAATATCCCTTGTTACCATGCATGCGGGCG
CATAAACCTCTTTTTCCTTAGTTTCATTTGTGAGAATGCTTGCGAAAGAA
ATCGTGAATGTCCACCTTTTTCACCTGTGCTTTCAACCTTGCGAGTGCTT
ACACCTGCACTAGCACACAATCAACCCTCCCTCCCTACTCCCCTCCATCA
TTCGCCTTGAAGGTAAAGCAAATGACGTGGCTGGAGACCCTTCGTCGAGA
TGGATGTCTTCCCCTGAAAACTATTGGCTTCTTCACTGGTGCGTGTAGAA
AGGAGAGGGAGGAGAGGAAGAAAGAATGGGGGAGGGAGAGAGGAGTAGAA
ACTATGCTGGTGTTATCTGCATACTGCCTGCGAGATAAATTACTCTACAT
TCAAATCTTTCCTGCTCTCCTTCCTTCTTCCATGTGACCGTTCTTAGGCA
TGGCTCTTACTATTATTGCCTGCCTGACTTTCGCTTCCAAGCTCTTGGAC
TTGAATGTCGTGGGGGCGATCAACCAGGTGAGGGAGGGAGGGAGGGAGGG
AGGGAGGGAGGGAGTGAGTGAGTGAGGGAGTGATTGATTGAATGGAAGAG
TGAGTGTGTGGAGTTTTGGGGAAAGGCGTAAGATAAGAAAAGAACAGGTT
GACATGTAGTCGTCCACCCCTTAGTATTAACGACGTATTTGTGAATCATA
CTTTCTCTTCCGTCCAACCCTCCCTCCCCCTGTCTCTTGCAGGTTTGGCT
TGCCATCTTCGGCCTAACGATGATGCTGCTCGAGGCATCTACCAGTACCA
ACTTCGTGTCGAAAAAGGTTTCTCGATGGTTAAATGAGAATATGAAGATA
TTGACATACATGACTGGACGCGGGTTGTTCTATTGCTTCCTCGGCACGGT
GAGGGCGGGAGTGAGGGAGTGAGTGTAATCTTCATCCTTTTTGCGCGCGT
CGCTGATTCTGTATGATTCTCTTACCCACCTTCTTTCCCTCCCCTCTTGT
CCTTCAGATCGAGCTAGGCTTCTGGTTCTCTACCCTCCACCTGGTTATTG
GCATCATCCTCTGCGTCTTGGGCGTAGTAACGATCTTTGTTGGATTTGCC
TTGGGGATGAAGCTTCGGTCCATCCGTCGGGATTTAGCCAGGGAGGACGA
CGCGCGTAAGGTACGTAAAACCTCAAAGCAGCAGCATGATGTACTGGATT
CTCTTTTCTCTCCCTGTCATGTGTTGTTGGATTAGCGCTTTTTTGCCTCA
TCATCTATCCCGGCATTCTCATTTGTCCTTTTCTCTCTCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTCCCT
CCCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTCCCTCCCTGCAGAC
CTTCCAAGATTTCGATGAAGACCAAGACGGACGTCTGTCAACCTCCGAGC
TCGCTCGGCTCTGCCATTCCTTGGGGAGTAAGCTGACCCACAACGAATTA
CAAGCAGCCGTTACGACACTGGACGTTAACAGGGACGGTTATATCCAAGA
GGAGGAGTTCTTGCGGTGGTGGCGGGGGGATGCGGAGCTCAAGAAACCGA
TCGAGGTGTGAGATTATGAGGCGGGAGGGAGGGGCCGAAGGAAGGCAGGG
ATTTGTGTGTATAGATGGGTGTTCTGGCGTGGTGTGTGTGTGTCGGTGGG
TGTGCATTGTGTGCATTGAAGGGGAAGGGAATGCTGGATAGAAAGAGCAA
AAGTGAATCAGAGAGAGATTGATCAAGCAATGAAAATCATGAAGGCTTAT
GCATCGATGTGCCCCTGGTCACGGCACAAAGACATGAGGTTGACAGATTT
TCAACCACATAAATACGGCGAAAGAAAAGCAGATTGAAAATGGGCGTGAC
AAACCAAAAGCTCTTACCGAGATACAGGAAGCCAAACCAGAATGAATTAT
GTGACCAGCAAAAGAAAATTGTACAGGTTTT
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Coding sequence (CDS) from alignment at chr8:1162055..1164735-

>NO08G04070.2 ID=NO08G04070.2|Name=NO08G04070.2|organism=Nannochloropsis oceanica|type=CDS|length=783bp|location=Sequence derived from alignment at chr8:1162055..1164735- (Nannochloropsis oceanica)
ATGTCCACCTTTTTCACCTGTGCTTTCAACCTTGCGAGTGCTTACACCTG
CACTAGCACACAATCAACCCTCCCTCCCTACTCCCCTCCATCATTCGCCT
TGAAGGTAAAGCAAATGACGTGGCTGGAGACCCTTCGTCGAGATGGATGT
CTTCCCCTGAAAACTATTGGCTTCTTCACTGGCATGGCTCTTACTATTAT
TGCCTGCCTGACTTTCGCTTCCAAGCTCTTGGACTTGAATGTCGTGGGGG
CGATCAACCAGGTTTGGCTTGCCATCTTCGGCCTAACGATGATGCTGCTC
GAGGCATCTACCAGTACCAACTTCGTGTCGAAAAAGGTTTCTCGATGGTT
AAATGAGAATATGAAGATATTGACATACATGACTGGACGCGGGTTGTTCT
ATTGCTTCCTCGGCACGATCGAGCTAGGCTTCTGGTTCTCTACCCTCCAC
CTGGTTATTGGCATCATCCTCTGCGTCTTGGGCGTAGTAACGATCTTTGT
TGGATTTGCCTTGGGGATGAAGCTTCGGTCCATCCGTCGGGATTTAGCCA
GGGAGGACGACGCGCGTAAGACCTTCCAAGATTTCGATGAAGACCAAGAC
GGACGTCTGTCAACCTCCGAGCTCGCTCGGCTCTGCCATTCCTTGGGGAG
TAAGCTGACCCACAACGAATTACAAGCAGCCGTTACGACACTGGACGTTA
ACAGGGACGGTTATATCCAAGAGGAGGAGTTCTTGCGGTGGTGGCGGGGG
GATGCGGAGCTCAAGAAACCGATCGAGGTGTGA
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Synonyms
Publications