NO08G03930, NO08G03930 (gene) Nannochloropsis oceanica

Overview
NameNO08G03930
Unique NameNO08G03930
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1671
Alignment locationchr8:1104128..1105798 +

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Properties
Property NameValue
DescriptionPlastid lipid associated protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:1104128..1105798 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR006843PAP/fibrillin_dom
Homology
BLAST of NO08G03930 vs. NCBI_GenBank
Match: EWM26864.1 (plastid lipid associated protein [Nannochloropsis gaditana])

HSP 1 Score: 282.0 bits (720), Expect = 1.700e-72
Identity = 140/181 (77.35%), Postives = 162/181 (89.50%), Query Frame = 0
Query:   28 TLAFNFFPTRSS-GAALKAGGPLAKLKTDLLSKAEEVNRGLESTPEKEEAILSLIKTIEKKNPTXXXXXXPLITARWRLVYTTSESILGKTRPALFRPVGPIYQYIDLAKGTARNEEQIRPIPFLPAIDEAIDATIEPASPQRVNVFFQRLMIGPLNVKFQSSNYLDTTYLDQEMRISRGG 208
            T  FNFFPTRSS G A+KAGGP++K+KT+LL KAEEV+RGLE++ E++E+IL+LIK++EKKNPT       LITARWRLV+TTSESILGKTRPA+FRPVGPIYQYI+LA+GTARNEEQIRPIPFLPAI+EAIDATIEP S QRVNVFFQRL +GPLN KFQS NYLDTTYLD++MRISR G
Sbjct:   27 THGFNFFPTRSSAGTAVKAGGPVSKIKTELLRKAEEVSRGLEASQEQQESILALIKSLEKKNPTKSPTSSALITARWRLVFTTSESILGKTRPAVFRPVGPIYQYINLARGTARNEEQIRPIPFLPAIEEAIDATIEPVSSQRVNVFFQRLFLGPLNFKFQSENYLDTTYLDKDMRISRSG 207          
BLAST of NO08G03930 vs. NCBI_GenBank
Match: XP_011397021.1 (putative plastid-lipid-associated protein 4, chloroplastic, partial [Auxenochlorella protothecoides] >KFM24135.1 putative plastid-lipid-associated protein 4, chloroplastic, partial [Auxenochlorella protothecoides])

HSP 1 Score: 129.4 bits (324), Expect = 1.400e-26
Identity = 70/172 (40.70%), Postives = 99/172 (57.56%), Query Frame = 0
Query:   50 AKLKTDLLSKAEEVNRGLESTPEKEEAILSLIKTIEKKNPTXXXXXXPLITARWRLVYTTSESILGKTRPALFRPVGPIYQYIDLAKGTARNEEQIRPIPFLPAIDEAIDATIEPASPQRVNVFFQRLMIG---PLNVKFQSSNYLDTTYLDQEMRISRGGRGNVFVLVRDD 219
            A L+T LL   E + RGL +TP   E I  L+  +E +NPT      PL+  +W L+YTTS+SILG++RP+  RP GPIYQ +D      +N E          +  A++A +EP S   V V F+R  +    P+     +   LDTTYLD+++RISRG +GN+FVL  +D
Sbjct:   11 AHLQTQLLEAIEPLQRGLTATPSDVERIEGLVVELEGRNPTAAPVNSPLLNGQWELLYTTSDSILGRSRPSFLRPKGPIYQTLDNESLRGKNRE-------TTPLFNAVEAELEPISDSEVAVQFKRFWLAGFIPVPAPASARGRLDTTYLDEDLRISRGDKGNLFVLRMND 175          
BLAST of NO08G03930 vs. NCBI_GenBank
Match: CBJ31999.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 125.6 bits (314), Expect = 2.000e-25
Identity = 68/169 (40.24%), Postives = 98/169 (57.99%), Query Frame = 0
Query:   50 AKLKTDLLSKAEEVNRGLESTPEKEEAILSLIKTIEKKNPTXXXXXXPLITARWRLVYTTSESILGKTRPALFRPVGPIYQYIDLAKGTARNEEQIRPIPFLPAIDEAIDATIEPASPQRVNVFFQRLMIGPLNVKF--QSSNYLDTTYLDQEMRISRGGRGNVFVLVR 217
            A  K +LL     + RGL ++ E +  +  L + +EK NP       PL+  RW LVYTTS SIL K  P + RP GPIYQ ID     A N + I+PIPFL  +   + A + P +    +V F+   +GPL +K   ++ + +D TY+D E+R++RG +GN+FVLVR
Sbjct:   62 ATAKQELLDAIVPLKRGLTASDEDKAVVEKLAQKVEKLNPNPKSLSSPLVNGRWELVYTTSMSILSKKNPVM-RPSGPIYQDIDAPGLRALNAQYIQPIPFL-KMPYQVSAELTPTTSSATDVQFKEFTVGPLKIKAPERAQSAIDITYVDDEVRVTRGSKGNLFVLVR 228          
BLAST of NO08G03930 vs. NCBI_GenBank
Match: XP_005651947.1 (plastid fibrillin 3 [Coccomyxa subellipsoidea C-169] >EIE27403.1 plastid fibrillin 3 [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 119.4 bits (298), Expect = 1.400e-23
Identity = 69/167 (41.32%), Postives = 98/167 (58.68%), Query Frame = 0
Query:   56 LLSKAEEVNRGLESTPEKEEAILSLIKTIEKKNPTXXXXXXPLITARWRLVYTTSESILGKTRPALFRPVGPIYQYIDLAKGTARNEEQIRPIPFLPAIDEAIDATIEPASPQRVNVFFQRL-MIGPLNVKFQSS--NYLDTTYLDQEMRISRGGRGNVFVLVRDDP 220
            LL     ++RG  ++  ++  +  L + +E+ NP       PL++A+WRL+YTTS SILG T+P   RP GPIYQ ID    TA+N+E     PF       + AT+ P +  RV V F+   ++G + VK   S    LDTTYLD+++RISRG +GN+FVL R  P
Sbjct:    7 LLELISRLDRGASASTSEKSEVDQLAQKLERVNPNKKALASPLLSAKWRLLYTTSASILGTTKPPFLRPQGPIYQTIDAQNLTAQNQE---TWPFF----NQVKATLTPETASRVAVQFREFKILGLIPVKAPPSARGKLDTTYLDEDLRISRGDKGNLFVLERAGP 166          
BLAST of NO08G03930 vs. NCBI_GenBank
Match: CEL92460.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 117.5 bits (293), Expect = 5.500e-23
Identity = 73/172 (42.44%), Postives = 96/172 (55.81%), Query Frame = 0
Query:   50 AKLKTDLLSKAEEVNRGLESTPEKEEAILSLIKTIEKKNPTXXXXXXPLITARWRLVYTTSESILGKTRPALFRPV-GPIYQYIDLAKGTARNEEQIRPIPFLPAIDEAIDATIEPASPQRVNVFFQRLMIGPLNVKFQSS--NYLDTTYLDQEMRISRGGRGNVFVLVRDD 219
            A  K D L +A  + RGL      +  +L+ ++ +EK NP       PL++ +WRL++TTSESI G  R   FRPV   I+Q ID    TA N E I PIP +  I   ++A + P S   V+V F    +G L +K   +    LD TYLD EMRISRG +GN FVLVR D
Sbjct:   61 ATKKKDALREA--IRRGL-----SDSEVLTAVEQVEKLNPNRRALKSPLLSGKWRLIWTTSESIKGTRRLPPFRPVKDEIFQTIDAKALTAENRETISPIPGV-RITNRVEAELTPTSDSAVDVKFTYFYLGSLRIKAPDTARGALDVTYLDDEMRISRGDKGNTFVLVRAD 224          
BLAST of NO08G03930 vs. NCBI_GenBank
Match: XP_005847116.1 (hypothetical protein CHLNCDRAFT_134838 [Chlorella variabilis] >EFN55014.1 hypothetical protein CHLNCDRAFT_134838 [Chlorella variabilis])

HSP 1 Score: 116.3 bits (290), Expect = 1.200e-22
Identity = 67/169 (39.64%), Postives = 94/169 (55.62%), Query Frame = 0
Query:   49 LAKLKTDLLSKAEEVNRGLESTPEKEEAILSLIKTIEKKNPTXXXXXXPLITARWRLVYTTSESILGKTRPALFRPVGPIYQYIDLAKGTARNEEQIRPIPFLPAIDEAIDATIEPASPQRVNVFFQR---LMIGPLNVKFQSSNYLDTTYLDQEMRISRGGRGNVFVL 215
            +A+ K +LL     + RGL +T E  + +  L   +E+ NPT       LI  +W L+YTTS+SILG ++PA  RP GPIYQ ID    TARN+E        P  ++ + A + P S  +V V F+    L + P+     +   L  TYLD E+R+SRG RGN+FVL
Sbjct:   15 VAEAKQELLEAIAPLKRGLTATDEDRQQVERLASKLERMNPTKRPLASDLINGQWELLYTTSDSILGMSKPAFLRPSGPIYQVIDAKALTARNKET------APLFNQ-VSAELIPESDSKVKVQFKEFKILGLVPIKAPPSAVGELAVTYLDDELRVSRGNRGNLFVL 176          
BLAST of NO08G03930 vs. NCBI_GenBank
Match: XP_002505051.1 (predicted protein, partial [Micromonas commoda] >ACO66309.1 predicted protein, partial [Micromonas commoda])

HSP 1 Score: 115.9 bits (289), Expect = 1.600e-22
Identity = 70/184 (38.04%), Postives = 92/184 (50.00%), Query Frame = 0
Query:   40 GAALKAGGPLAK--LKTDLLSKAEEVNRGLESTPEKEEAILSLIKTIEKKNPTXXXXXXPLITARWRLVYTTSESILGKTRPALFRPVGPIYQYIDLAKGTARNEEQIRPIPFLPAIDEAIDATIEPASPQRVNVFFQRLMI---GPLNVKFQSSNYLDTTYLDQEMRISRGGRGNVFVLVRDD 219
            G     GG   +   K  LL   E   RG+ ++ E   A+ +    +E+ NP       PL+   W L+YTTS SILG  +P   RP GPIYQ ID+ +  ARN E     PF      A+DA + P S   VNV F +  I    P++    +   LD TYLD + R+SRG RGN+FVL   D
Sbjct:    4 GGIFNGGGSKRREAAKAALLEAIEGTQRGVAASEEDVAAVEAAASALERLNPNRQPLASPLVNGEWELLYTTSASILGANKPWFLRPSGPIYQAIDVGRLRARNRE---TFPFF----NAVDADLTPTSRSAVNVQFVKFFIFGVAPVDAPPSARGALDVTYLDDDTRVSRGDRGNLFVLRMHD 180          
BLAST of NO08G03930 vs. NCBI_GenBank
Match: PRW57178.1 (putative plastid-lipid-associated chloroplastic [Chlorella sorokiniana])

HSP 1 Score: 115.2 bits (287), Expect = 2.700e-22
Identity = 62/165 (37.58%), Postives = 94/165 (56.97%), Query Frame = 0
Query:   57 LSKAEEVNRGLESTPEKEEAILSLIKTIEKKNPTXXXXXXPLITARWRLVYTTSESILGKTRPALFRPVGPIYQYIDLAKGTARNEEQIRPIPFLPAIDEAIDATIEPASPQRVNVFFQR---LMIGPLNVKFQSSNYLDTTYLDQEMRISRGGRGNVFVLVRDD 219
            L   + + RGL ++ E ++ I  L + +E++NPT       L++ +W L+YTTS SILG  RPAL RP GP YQ +D A  TARN+E        P     + A + P + + V V F+    L + P+     ++  L+ TYLD+E+R+SRG +GN+F+L   D
Sbjct:   21 LEAIKPLKRGLAASEEDQQRIDRLARQLERRNPTKKPLASDLLSGQWELLYTTSGSILGANRPALLRPTGPTYQVLDTATLTARNKEG-------PPFFNQVSAELIPQNDRSVKVQFKEFKILGLIPIKAPANAAGALEVTYLDEELRVSRGDKGNLFILRMQD 178          
BLAST of NO08G03930 vs. NCBI_GenBank
Match: XP_009035800.1 (hypothetical protein AURANDRAFT_63175 [Aureococcus anophagefferens] >EGB09762.1 hypothetical protein AURANDRAFT_63175 [Aureococcus anophagefferens])

HSP 1 Score: 114.4 bits (285), Expect = 4.700e-22
Identity = 69/165 (41.82%), Postives = 97/165 (58.79%), Query Frame = 0
Query:   56 LLSKAEEVNRGLESTPEKEEAILSLIKTIEKKNPTXXXXXXPLITARWRLVYTTSESILGKTRPALFRPVGPIYQYIDLAKGTARNEEQIRPIPFLPAIDEAIDATIEPASPQR-VNVFFQRLMIGPLNVKFQSS--NYLDTTYLDQEMRISRGGRGNVFVLVRD 218
            L+ + EE + G +   ++   +LS ++ +E  NPT      P + ARWRL+YTTS+SILG  R  LFRP   I Q+++ A   A NEE +        +  ++ AT+EP    R V+V F+R  IG L +    S    L+TTYLD E+RISRG +GN+FVLVRD
Sbjct:  469 LVQECEEADMGRDL--KRRGVVLSHVEALEASNPTPEPLASPDLNARWRLIYTTSDSILGTNRMRLFRPRPRILQHVNAATLAAYNEEWV----LGGLLRNSVKATLEPRGDGRTVDVQFKRFGIGWLKIPAPKSARGVLETTYLDPELRISRGDKGNIFVLVRD 627          
BLAST of NO08G03930 vs. NCBI_GenBank
Match: OSX69588.1 (hypothetical protein BU14_1367s0002 [Porphyra umbilicalis])

HSP 1 Score: 114.0 bits (284), Expect = 6.100e-22
Identity = 66/185 (35.68%), Postives = 98/185 (52.97%), Query Frame = 0
Query:   35 PTRSSGAALKAGGPLAKLKTDLLS--KAEEVNRGLESTPEKEEAILSLIKTIEKKNPTXXXXXXPLITARWRLVYTTSESILGKTRPALFRPVGPIYQYIDLAKGTARNEEQIRPIPFLPAIDEAIDATIEPASPQRVNVFFQRLMIGPLNVKFQSS--NYLDTTYLDQEMRISRGGRGNVFVLV 216
            P  +      +  P   +K +L++   +  + R + S    +E I ++++ +E  NPT        + A W+LVYTTS SILG +RP   RP   I+Q +D+  GT  N EQ+        +   + AT     P RV V FQR   GPL+VK  +S   +LD TYLD E+R+SRG + N+FVL+
Sbjct:   50 PNGTPTMVFSSASPTTAVKAELMTAIASTRLGRSVASDRRAQEKIDAIVRRLEALNPTPVPVESAELGAVWKLVYTTSASILGTSRPPPLRPNDEIFQSVDVGAGTITNSEQLAG----GLLTNKVHATFGVKPPMRVQVQFQRFQFGPLSVKAPASAKGFLDVTYLDDEVRVSRGNKDNLFVLL 230          
The following BLAST results are available for this feature:
BLAST of NO08G03930 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM26864.11.700e-7277.35plastid lipid associated protein [Nannochloropsis ... [more]
XP_011397021.11.400e-2640.70putative plastid-lipid-associated protein 4, chlor... [more]
CBJ31999.12.000e-2540.24conserved unknown protein [Ectocarpus siliculosus][more]
XP_005651947.11.400e-2341.32plastid fibrillin 3 [Coccomyxa subellipsoidea C-16... [more]
CEL92460.15.500e-2342.44unnamed protein product [Vitrella brassicaformis C... [more]
XP_005847116.11.200e-2239.64hypothetical protein CHLNCDRAFT_134838 [Chlorella ... [more]
XP_002505051.11.600e-2238.04predicted protein, partial [Micromonas commoda] >A... [more]
PRW57178.12.700e-2237.58putative plastid-lipid-associated chloroplastic [C... [more]
XP_009035800.14.700e-2241.82hypothetical protein AURANDRAFT_63175 [Aureococcus... [more]
OSX69588.16.100e-2235.68hypothetical protein BU14_1367s0002 [Porphyra umbi... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008605NSK008605Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G03930.1NO08G03930.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583211gene_3730Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100097g9gene3680Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G03930.1NO08G03930.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G03930 ID=NO08G03930|Name=NO08G03930|organism=Nannochloropsis oceanica|type=gene|length=1671bp
ATGGCCATGCCCTGCAGCAGCAGCCGCCGAAAGCCTTTAGTCCTGCTCCT
TTCGGCCTTCCTGGCCCTCTTAATGCCTACCACCCTGGCATTTAACTTCT
TCCCGACGCGCTCCTCGGGCGCAGCTCTCAAGGCCGGTGGCCCCTTGGCC
AAGgtatgtgtgtacttattatgggattatgggggaataacttgtgggtg
ggggcttggtggaggaatttcgttaggaatgggatggggtgcagatggag
ggtggaaggaagtaggagcttggggctcgcgtcctgggcgtggagggagg
gaaggagggaaagagggagtggagcacagcagttttatggaacacaggcc
ggaacaaacatgtgccattcggctcaggacacaggggggcatgattcaaa
tgcatttcacctaaaggacggtgcagcatgcactgtactctcgtcacgtg
gcacagacggctccgcttgatttcacccatcatctcccgcacacgcaccc
ttacacaaaccccaatagCTTAAGACAGACCTCCTCTCCAAAGCGGAAGA
GGTCAACCGTGGGCTGGAATCCACGCCCGAGAAGGAAGAAGCCATCCTCA
GCCTCATCAAGACCATCGAGAAGAAGAACCCCACCAAGACgtacgtatga
gacgctccgtccctcgtcacctcttttcttgtatcacctcttgctccttg
ggctctctttaatctggatatttgtcgctgctaattggcgcgttctacaa
ctgcgtctacacatccaggaaacccactcgggcaagccaactcatcctcc
tttcctccctccctcccctcgtccctccacccttccgtctgcttcctcag
GCCCACCAAATCCCCGCTCATTACCGCGCGCTGGCGTTTAGTGTACACGA
CCAGCGAGTCCATCTTAGGGAAGACTCGGCCGGCTTTGTTCAGACCAGTA
GGCCCCATCTATCAGTACATCGACCTTGCCAAGGGCACGGCCAGgtgagg
aagggaggcaaggagggagagaagagtgaagaaaatgatgcgtgcatgca
taggcgtatgataaatatgttcacagtgagcagacacacttacgccctcc
cccttcctcgctctccctccctcccaccctcccgccctccctcccgccct
tcgtcagGAACGAAGAGCAAATCCGACCCATTCCCTTCCTCCCCGCGATC
GACGAGGCCATCGACGCCACCATCGAACCGGCCTCCCCCCAACGGGTCAA
TGTGTTTTTCCAACGGCTTATGATTGGCCCTCTCAATGTCAAGTTCCAGA
GCTCTAATTACCTGGATACGACCTACCTGGATCAAGAAATGAGAATCTCG
AGgtacgtgccttacgatctttcctctcgctctctttgactcttttgttc
ttatgctctctctttcttttttcctctggctctcgaactcgtttcctgct
tttgctcccgtatgatttttgcctccctccctctccaacagagggaaggg
aggagagagggggggggggaggaaatagaatgatggtccccgtcgacgaa
gaagactcttgctcgcctctcatcccatactcgccccttcatccaccccc
acagAGGTGGGCGCGGCAACGTCTTCGTGCTCGTGCGTGACGATCCAGCG
ACCGCGACGAATCGATTATGA
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protein sequence of NO08G03930.1

>NO08G03930.1-protein ID=NO08G03930.1-protein|Name=NO08G03930.1|organism=Nannochloropsis oceanica|type=polypeptide|length=227bp
MAMPCSSSRRKPLVLLLSAFLALLMPTTLAFNFFPTRSSGAALKAGGPLA
KLKTDLLSKAEEVNRGLESTPEKEEAILSLIKTIEKKNPTKTPTKSPLIT
ARWRLVYTTSESILGKTRPALFRPVGPIYQYIDLAKGTARNEEQIRPIPF
LPAIDEAIDATIEPASPQRVNVFFQRLMIGPLNVKFQSSNYLDTTYLDQE
MRISRGGRGNVFVLVRDDPATATNRL*
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Synonyms
Publications