NO08G03930.1, NO08G03930.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G03930.1
Unique NameNO08G03930.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length681
Alignment locationchr8:1104128..1105798 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:1104128..1105798 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO08G03930.1 vs.
Match: EWM26864.1 (plastid lipid associated protein [Nannochloropsis gaditana])

HSP 1 Score: 295.4 bits (755), Expect = 1.500e-76
Identity = 150/196 (76.53%), Postives = 175/196 (89.29%), Query Frame = 0 
Query:   13 LVLLLSAFLALLMPTTLAFNFFPTRSS-GAALKAGGPLAKLKTDLLSKAEEVNRGLESTPEKEEAILSLIKTIEKKNPTKTPTKSPLITARWRLVYTTSESILGKTRPALFRPVGPIYQYIDLAKGTARNEEQIRPIPFLPAIDEAIDATIEPASPQRVNVFFQRLMIGPLNVKFQSSNYLDTTYLDQEMRISRGG 208
            L++LL  FL L    T  FNFFPTRSS G A+KAGGP++K+KT+LL KAEEV+RGLE++ E++E+IL+LIK++EKKNPTK+PT S LITARWRLV+TTSESILGKTRPA+FRPVGPIYQYI+LA+GTARNEEQIRPIPFLPAI+EAIDATIEP S QRVNVFFQRL +GPLN KFQS NYLDTTYLD++MRISR G
Sbjct:   12 LLVLLLIFLLLTPVVTHGFNFFPTRSSAGTAVKAGGPVSKIKTELLRKAEEVSRGLEASQEQQESILALIKSLEKKNPTKSPTSSALITARWRLVFTTSESILGKTRPAVFRPVGPIYQYINLARGTARNEEQIRPIPFLPAIEEAIDATIEPVSSQRVNVFFQRLFLGPLNFKFQSENYLDTTYLDKDMRISRSG 207
The following BLAST results are available for this feature:
BLAST of NO08G03930.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26864.11.500e-7676.53plastid lipid associated protein [Nannochloropsis ... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G03930NO08G03930Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G03930.1NO08G03930.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G03930.1.cds1NO08G03930.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G03930.1.cds2NO08G03930.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G03930.1.cds3NO08G03930.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G03930.1.cds4NO08G03930.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G03930.1.cds5NO08G03930.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G03930.1 ID=NO08G03930.1|Name=NO08G03930.1|organism=Nannochloropsis oceanica|type=mRNA|length=681bp
ATGGCCATGCCCTGCAGCAGCAGCCGCCGAAAGCCTTTAGTCCTGCTCCT
TTCGGCCTTCCTGGCCCTCTTAATGCCTACCACCCTGGCATTTAACTTCT
TCCCGACGCGCTCCTCGGGCGCAGCTCTCAAGGCCGGTGGCCCCTTGGCC
AAGCTTAAGACAGACCTCCTCTCCAAAGCGGAAGAGGTCAACCGTGGGCT
GGAATCCACGCCCGAGAAGGAAGAAGCCATCCTCAGCCTCATCAAGACCA
TCGAGAAGAAGAACCCCACCAAGACGCCCACCAAATCCCCGCTCATTACC
GCGCGCTGGCGTTTAGTGTACACGACCAGCGAGTCCATCTTAGGGAAGAC
TCGGCCGGCTTTGTTCAGACCAGTAGGCCCCATCTATCAGTACATCGACC
TTGCCAAGGGCACGGCCAGGAACGAAGAGCAAATCCGACCCATTCCCTTC
CTCCCCGCGATCGACGAGGCCATCGACGCCACCATCGAACCGGCCTCCCC
CCAACGGGTCAATGTGTTTTTCCAACGGCTTATGATTGGCCCTCTCAATG
TCAAGTTCCAGAGCTCTAATTACCTGGATACGACCTACCTGGATCAAGAA
ATGAGAATCTCGAGAGGTGGGCGCGGCAACGTCTTCGTGCTCGTGCGTGA
CGATCCAGCGACCGCGACGAATCGATTATGA
back to top

protein sequence of NO08G03930.1

>NO08G03930.1-protein ID=NO08G03930.1-protein|Name=NO08G03930.1|organism=Nannochloropsis oceanica|type=polypeptide|length=227bp
MAMPCSSSRRKPLVLLLSAFLALLMPTTLAFNFFPTRSSGAALKAGGPLA
KLKTDLLSKAEEVNRGLESTPEKEEAILSLIKTIEKKNPTKTPTKSPLIT
ARWRLVYTTSESILGKTRPALFRPVGPIYQYIDLAKGTARNEEQIRPIPF
LPAIDEAIDATIEPASPQRVNVFFQRLMIGPLNVKFQSSNYLDTTYLDQE
MRISRGGRGNVFVLVRDDPATATNRL*
back to top

mRNA from alignment at chr8:1104128..1105798+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G03930.1 ID=NO08G03930.1|Name=NO08G03930.1|organism=Nannochloropsis oceanica|type=mRNA|length=1671bp|location=Sequence derived from alignment at chr8:1104128..1105798+ (Nannochloropsis oceanica)
ATGGCCATGCCCTGCAGCAGCAGCCGCCGAAAGCCTTTAGTCCTGCTCCT
TTCGGCCTTCCTGGCCCTCTTAATGCCTACCACCCTGGCATTTAACTTCT
TCCCGACGCGCTCCTCGGGCGCAGCTCTCAAGGCCGGTGGCCCCTTGGCC
AAGGTATGTGTGTACTTATTATGGGATTATGGGGGAATAACTTGTGGGTG
GGGGCTTGGTGGAGGAATTTCGTTAGGAATGGGATGGGGTGCAGATGGAG
GGTGGAAGGAAGTAGGAGCTTGGGGCTCGCGTCCTGGGCGTGGAGGGAGG
GAAGGAGGGAAAGAGGGAGTGGAGCACAGCAGTTTTATGGAACACAGGCC
GGAACAAACATGTGCCATTCGGCTCAGGACACAGGGGGGCATGATTCAAA
TGCATTTCACCTAAAGGACGGTGCAGCATGCACTGTACTCTCGTCACGTG
GCACAGACGGCTCCGCTTGATTTCACCCATCATCTCCCGCACACGCACCC
TTACACAAACCCCAATAGCTTAAGACAGACCTCCTCTCCAAAGCGGAAGA
GGTCAACCGTGGGCTGGAATCCACGCCCGAGAAGGAAGAAGCCATCCTCA
GCCTCATCAAGACCATCGAGAAGAAGAACCCCACCAAGACGTACGTATGA
GACGCTCCGTCCCTCGTCACCTCTTTTCTTGTATCACCTCTTGCTCCTTG
GGCTCTCTTTAATCTGGATATTTGTCGCTGCTAATTGGCGCGTTCTACAA
CTGCGTCTACACATCCAGGAAACCCACTCGGGCAAGCCAACTCATCCTCC
TTTCCTCCCTCCCTCCCCTCGTCCCTCCACCCTTCCGTCTGCTTCCTCAG
GCCCACCAAATCCCCGCTCATTACCGCGCGCTGGCGTTTAGTGTACACGA
CCAGCGAGTCCATCTTAGGGAAGACTCGGCCGGCTTTGTTCAGACCAGTA
GGCCCCATCTATCAGTACATCGACCTTGCCAAGGGCACGGCCAGGTGAGG
AAGGGAGGCAAGGAGGGAGAGAAGAGTGAAGAAAATGATGCGTGCATGCA
TAGGCGTATGATAAATATGTTCACAGTGAGCAGACACACTTACGCCCTCC
CCCTTCCTCGCTCTCCCTCCCTCCCACCCTCCCGCCCTCCCTCCCGCCCT
TCGTCAGGAACGAAGAGCAAATCCGACCCATTCCCTTCCTCCCCGCGATC
GACGAGGCCATCGACGCCACCATCGAACCGGCCTCCCCCCAACGGGTCAA
TGTGTTTTTCCAACGGCTTATGATTGGCCCTCTCAATGTCAAGTTCCAGA
GCTCTAATTACCTGGATACGACCTACCTGGATCAAGAAATGAGAATCTCG
AGGTACGTGCCTTACGATCTTTCCTCTCGCTCTCTTTGACTCTTTTGTTC
TTATGCTCTCTCTTTCTTTTTTCCTCTGGCTCTCGAACTCGTTTCCTGCT
TTTGCTCCCGTATGATTTTTGCCTCCCTCCCTCTCCAACAGAGGGAAGGG
AGGAGAGAGGGGGGGGGGGAGGAAATAGAATGATGGTCCCCGTCGACGAA
GAAGACTCTTGCTCGCCTCTCATCCCATACTCGCCCCTTCATCCACCCCC
ACAGAGGTGGGCGCGGCAACGTCTTCGTGCTCGTGCGTGACGATCCAGCG
ACCGCGACGAATCGATTATGA
back to top

Coding sequence (CDS) from alignment at chr8:1104128..1105798+

>NO08G03930.1 ID=NO08G03930.1|Name=NO08G03930.1|organism=Nannochloropsis oceanica|type=CDS|length=681bp|location=Sequence derived from alignment at chr8:1104128..1105798+ (Nannochloropsis oceanica)
ATGGCCATGCCCTGCAGCAGCAGCCGCCGAAAGCCTTTAGTCCTGCTCCT
TTCGGCCTTCCTGGCCCTCTTAATGCCTACCACCCTGGCATTTAACTTCT
TCCCGACGCGCTCCTCGGGCGCAGCTCTCAAGGCCGGTGGCCCCTTGGCC
AAGCTTAAGACAGACCTCCTCTCCAAAGCGGAAGAGGTCAACCGTGGGCT
GGAATCCACGCCCGAGAAGGAAGAAGCCATCCTCAGCCTCATCAAGACCA
TCGAGAAGAAGAACCCCACCAAGACGCCCACCAAATCCCCGCTCATTACC
GCGCGCTGGCGTTTAGTGTACACGACCAGCGAGTCCATCTTAGGGAAGAC
TCGGCCGGCTTTGTTCAGACCAGTAGGCCCCATCTATCAGTACATCGACC
TTGCCAAGGGCACGGCCAGGAACGAAGAGCAAATCCGACCCATTCCCTTC
CTCCCCGCGATCGACGAGGCCATCGACGCCACCATCGAACCGGCCTCCCC
CCAACGGGTCAATGTGTTTTTCCAACGGCTTATGATTGGCCCTCTCAATG
TCAAGTTCCAGAGCTCTAATTACCTGGATACGACCTACCTGGATCAAGAA
ATGAGAATCTCGAGAGGTGGGCGCGGCAACGTCTTCGTGCTCGTGCGTGA
CGATCCAGCGACCGCGACGAATCGATTATGA
back to top
Synonyms
Publications