NO08G03900, NO08G03900 (gene) Nannochloropsis oceanica

Overview
NameNO08G03900
Unique NameNO08G03900
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1295
Alignment locationchr8:1097095..1098389 -

Link to JBrowse

Properties
Property NameValue
Description50S ribosomal protein L23
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:1097095..1098389 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR012678Ribosomal_L23/L15e_core_dom
IPR013025Ribosomal_L25/23
Homology
BLAST of NO08G03900 vs. NCBI_GenBank
Match: XP_002291250.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED91357.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 82.0 bits (201), Expect = 1.100e-12
Identity = 45/98 (45.92%), Postives = 62/98 (63.27%), Query Frame = 0
Query:    3 FRVNFPSFFMALIRA--PTQAQPYQAVFRVSPAMNKLEIREYLTKIYGLSVRKVMTANMAGRRKRIFGARRLLRYKRPDFKKAYVTLGEEV-EAGQGG 98
            +++  PS  + L+ A   T + P  A FR+ P M K E+REYLTKIY L V++V T N  G+R RI G R ++  KRPD+KKA+V  G E+ + G GG
Sbjct:   26 YKMWMPSLPLVLLTATHATPSNPATAQFRILPKMTKHEVREYLTKIYDLPVKEVRTQNYLGKRMRIIGKRHIVYAKRPDYKKAFVVFGSELADVGLGG 123          
BLAST of NO08G03900 vs. NCBI_GenBank
Match: OEU21157.1 (hypothetical protein FRACYDRAFT_267876 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 80.5 bits (197), Expect = 3.300e-12
Identity = 46/97 (47.42%), Postives = 62/97 (63.92%), Query Frame = 0
Query:    3 FRVNFPSFFMALIRA--PTQAQPYQAVFRVSPAMNKLEIREYLTKIYGLSVRKVMTANMAGRRKRIFGARRLLRYKRPDFKKAYVTLGEE-VEAGQG 97
            FR+  P+  M ++ A   T  QP +A FRV P M K EI+EYLTKIYGL VR+V T+N  G+RK + G+  ++RYK  DFKKA V+      + G+G
Sbjct:   12 FRMWMPNMPMLMVSAKNATARQPARATFRVLPRMTKHEIKEYLTKIYGLPVRQVNTSNYMGKRKIVRGSSAVIRYKYADFKKAVVSFDRSFTDVGRG 108          
BLAST of NO08G03900 vs. NCBI_GenBank
Match: EJK54740.1 (hypothetical protein THAOC_25606, partial [Thalassiosira oceanica])

HSP 1 Score: 74.7 bits (182), Expect = 1.800e-10
Identity = 41/77 (53.25%), Postives = 49/77 (63.64%), Query Frame = 0
Query:   23 PYQAVFRVSPAMNKLEIREYLTKIYGLSVRKVMTANMAGRRKRIFGARRLLRYKRPDFKKAYVTLGEEVEAGQGGGA 100
            P QA FR+ P M K E++EYLTKIYGL V KV T N  G+R R+ G   +   KRPDFKKA+VT  +   A  G GA
Sbjct:    8 PAQATFRILPKMTKHEVKEYLTKIYGLPVVKVRTQNYMGKRIRVMGKTHIAYGKRPDFKKAFVTF-DNTLADTGMGA 83          
BLAST of NO08G03900 vs. NCBI_GenBank
Match: EJK70727.1 (hypothetical protein THAOC_07894 [Thalassiosira oceanica])

HSP 1 Score: 72.4 bits (176), Expect = 9.000e-10
Identity = 40/77 (51.95%), Postives = 49/77 (63.64%), Query Frame = 0
Query:   23 PYQAVFRVSPAMNKLEIREYLTKIYGLSVRKVMTANMAGRRKRIFGARRLLRYKRPDFKKAYVTLGEEVEAGQGGGA 100
            P QA FRV P M K E++EYLTKIYGL V KV T N  G+R R+ G   +   KRPD+KKA+V+  +   A  G GA
Sbjct:   49 PAQATFRVLPKMTKHEVKEYLTKIYGLPVVKVRTQNYMGKRIRVMGKTHIAYGKRPDYKKAFVSF-DNTLADTGMGA 124          
BLAST of NO08G03900 vs. NCBI_GenBank
Match: GAX10852.1 (hypothetical protein FisN_31Hu059 [Fistulifera solaris])

HSP 1 Score: 71.6 bits (174), Expect = 1.500e-9
Identity = 40/92 (43.48%), Postives = 56/92 (60.87%), Query Frame = 0
Query:    3 FRVNFPSFFMALIRA--PTQAQPYQAVFRVSPAMNKLEIREYLTKIYGLSVRKVMTANMAGRRKRIFGARRLLRYKRPDFKKAYVTLGEEVE 93
            FR+  P+  + L+ A   T   P +AVFR  P M K EI+EYLTKIY L V++V T N  G+RKR+    + + +K  DFKKA VT  + ++
Sbjct:   10 FRMWMPTMPLTLVSAKNATPTHPARAVFRTLPRMTKHEIKEYLTKIYQLPVKQVNTMNYQGKRKRLLTQNKPVYFKYKDFKKAVVTFDDSLQ 101          
BLAST of NO08G03900 vs. NCBI_GenBank
Match: GAX96992.1 (ribosomal protein L23, putative [Pythium insidiosum])

HSP 1 Score: 69.7 bits (169), Expect = 5.900e-9
Identity = 42/88 (47.73%), Postives = 53/88 (60.23%), Query Frame = 0
Query:    4 RVNFPSFFMALI--RAPTQAQPYQAVFRVSPAMNKLEIREYLTKIYGLSVRKVMTANMAGRRKRIFGARRLLRYKRPDFKKAYVTLGE 90
            R+ FP+  M  +   A T+ +  Q VFRV P   K +I+EYLTK+YGL V KV T N  G+ KR F  R +  YK  D+KKA VTL E
Sbjct:    5 RIRFPNMSMVFMGKNARTRLRDNQYVFRVEPNYTKHDIKEYLTKVYGLPVTKVNTMNYEGKFKRAFRGRYV--YKEKDWKKAIVTLKE 90          
BLAST of NO08G03900 vs. NCBI_GenBank
Match: XP_002177223.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC51686.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 69.3 bits (168), Expect = 7.600e-9
Identity = 39/92 (42.39%), Postives = 55/92 (59.78%), Query Frame = 0
Query:    3 FRVNFPSFFMALI--RAPTQAQPYQAVFRVSPAMNKLEIREYLTKIYGLSVRKVMTANMAGRRKRIFGARRLLRYKRPDFKKAYVTLGEEVE 93
            FR+  PS  + ++  R+ T   P  A+FR  P M K EI+EYLTKIY L V+KV T N  G+RKR+     +  +K  +FKKA VT  + ++
Sbjct:   15 FRMWMPSMPLTMVSARSATANGPAFAIFRTVPRMTKHEIKEYLTKIYDLPVKKVNTMNYEGKRKRLISNSGIAYFKYKNFKKAVVTFDDSLQ 106          
BLAST of NO08G03900 vs. NCBI_GenBank
Match: XP_024582746.1 (ribosomal protein [Plasmopara halstedii] >CEG46377.1 ribosomal protein [Plasmopara halstedii])

HSP 1 Score: 68.9 bits (167), Expect = 1.000e-8
Identity = 42/88 (47.73%), Postives = 53/88 (60.23%), Query Frame = 0
Query:    4 RVNFPSFFMALI--RAPTQAQPYQAVFRVSPAMNKLEIREYLTKIYGLSVRKVMTANMAGRRKRIFGARRLLRYKRPDFKKAYVTLGE 90
            RV FP+  +  +   A T+ +  Q VFRV P   K EI+EYLTK+YGL V KV T N  G+ KR F  R +  YK  D+KKA VT+ E
Sbjct:    5 RVRFPNMAVTFMGKNARTRLRDNQYVFRVEPNYTKHEIKEYLTKVYGLPVTKVNTMNYEGKFKRAFRGRYV--YKEKDWKKAIVTIKE 90          
BLAST of NO08G03900 vs. NCBI_GenBank
Match: XP_009531124.1 (hypothetical protein PHYSODRAFT_355008 [Phytophthora sojae] >EGZ13695.1 hypothetical protein PHYSODRAFT_355008 [Phytophthora sojae] >OWZ07470.1 Ribosomal protein L23 [Phytophthora megakarya] >POM74063.1 Ribosomal protein L23 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 67.0 bits (162), Expect = 3.800e-8
Identity = 42/88 (47.73%), Postives = 52/88 (59.09%), Query Frame = 0
Query:    4 RVNFPSFFMALI--RAPTQAQPYQAVFRVSPAMNKLEIREYLTKIYGLSVRKVMTANMAGRRKRIFGARRLLRYKRPDFKKAYVTLGE 90
            RV FP+  +  +   A T+ +  Q VFRV P   K EI+EYLTK+Y L V KV T N  G+ KR F  R +  YK  D+KKA VTL E
Sbjct:    5 RVKFPNMAVTFMGKNARTRLRDNQFVFRVEPHYTKHEIKEYLTKVYDLPVAKVNTMNYEGKFKRAFRGRYV--YKEKDWKKAIVTLKE 90          
BLAST of NO08G03900 vs. NCBI_GenBank
Match: XP_008893333.1 (hypothetical protein PPTG_01701 [Phytophthora parasitica INRA-310] >ETI45076.1 hypothetical protein F443_10256 [Phytophthora parasitica P1569] >ETK85051.1 hypothetical protein L915_10031 [Phytophthora parasitica] >ETL38473.1 hypothetical protein L916_09938 [Phytophthora parasitica] >ETL91593.1 hypothetical protein L917_09861 [Phytophthora parasitica] >ETM44887.1 hypothetical protein L914_09912 [Phytophthora parasitica] >ETN21552.1 hypothetical protein PPTG_01701 [Phytophthora parasitica INRA-310] >ETO73739.1 hypothetical protein F444_10355 [Phytophthora parasitica P1976] >ETP14893.1 hypothetical protein F441_10193 [Phytophthora parasitica CJ01A1] >ETP42961.1 hypothetical protein F442_10160 [Phytophthora parasitica P10297] >KUF80782.1 50S ribosomal protein L23 [Phytophthora nicotianae] >KUF89234.1 hypothetical protein AM588_10003035 [Phytophthora nicotianae] >KUF90823.1 50S ribosomal protein L23 [Phytophthora nicotianae])

HSP 1 Score: 67.0 bits (162), Expect = 3.800e-8
Identity = 42/88 (47.73%), Postives = 52/88 (59.09%), Query Frame = 0
Query:    4 RVNFPSFFMALI--RAPTQAQPYQAVFRVSPAMNKLEIREYLTKIYGLSVRKVMTANMAGRRKRIFGARRLLRYKRPDFKKAYVTLGE 90
            RV FP+  +  +   A T+ +  Q VFRV P   K EI+EYLTK+Y L V KV T N  G+ KR F  R +  YK  D+KKA VTL E
Sbjct:    5 RVKFPNMAVTFMGKNARTRLRDNQYVFRVEPHYTKHEIKEYLTKVYDLPVAKVNTMNYEGKFKRAFRGRYV--YKEKDWKKAIVTLKE 90          
The following BLAST results are available for this feature:
BLAST of NO08G03900 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 18
Match NameE-valueIdentityDescription
XP_002291250.11.100e-1245.92predicted protein [Thalassiosira pseudonana CCMP13... [more]
OEU21157.13.300e-1247.42hypothetical protein FRACYDRAFT_267876 [Fragilario... [more]
EJK54740.11.800e-1053.25hypothetical protein THAOC_25606, partial [Thalass... [more]
EJK70727.19.000e-1051.95hypothetical protein THAOC_07894 [Thalassiosira oc... [more]
GAX10852.11.500e-943.48hypothetical protein FisN_31Hu059 [Fistulifera sol... [more]
GAX96992.15.900e-947.73ribosomal protein L23, putative [Pythium insidiosu... [more]
XP_002177223.17.600e-942.39predicted protein [Phaeodactylum tricornutum CCAP ... [more]
XP_024582746.11.000e-847.73ribosomal protein [Plasmopara halstedii] >CEG46377... [more]
XP_009531124.13.800e-847.73hypothetical protein PHYSODRAFT_355008 [Phytophtho... [more]
XP_008893333.13.800e-847.73hypothetical protein PPTG_01701 [Phytophthora para... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008609NSK008609Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G03900.1NO08G03900.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583201gene_3727Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G03900.1NO08G03900.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G03900 ID=NO08G03900|Name=NO08G03900|organism=Nannochloropsis oceanica|type=gene|length=1295bp
TTCGTGGTGGCGCGACCATGCTGTAGTTGTATGTACGGTGCGTGGCACGG
GTTGACAAGTGAGGCAGGAGGCCGCCACAACGAAAGAACATAGGCGGTTG
TCCGTTGTTGATGACGCTTTGGAGATCGTTGATGCTGGCGCGCCTGTTGG
TGAGCCTAGGAGATGTACATGTCCCCAAACTCACGACATTCCCCTCTGTA
AATCTACAGATCGGTAGGGGACGCAAAGAGTAGCGGGGACTGGTTGCGCC
GCAAAAGAGGAAGGGGACAGAGACAGGAAAGGAAGAGCAAAGCAAGTACT
CTTTGAGACGAGGCGCGCACTCAAGCGGCTAGATTACTTGTCCAAGGATC
CACACCACTACCACAAAGgtatgtagtcgaccaccaataccgtcaaaata
atcggatggggttgcttgtgtaaggcggcaaggacggagctcgtgggact
gccgcagccttagggtaaggatgcaagacacatggagagccaagatagcg
tcgtgaacatcaccaacagaccctctctccctgcaaccgccttcacggca
acatatgcaaatgggtagccgtgttgaatcgcagacatgtatgaccggcc
actcatttcctccttccccttaattcttttatcagATGCCGTTTCGCGTC
AACTTTCCCTCCTTCTTCATGGCCCTTATCCGAGCTCCCACTCAAGCTCA
GCCGTACCAAGCCGTCTTCCGCGTGTCCCCAGCCATGAACAAATTAGAGA
TCCGGGAATACTTGACAAAAATTTATGGGTTGTCAGTGCGCAAGGTCATG
ACGGCAAATATGGCAGGGAGAAGAAAAAGgtgcgtttgtgtgtgtgtgct
gccatgaggtacaacgtctctcattcctttcatccaacgcggtgcagaag
tctctctggctcgcatgctaccctttcccatactccttcttcctccatcc
tgtgaccctccgaaccccatttactccacccatcggctctctctcttcct
ccctctctctctccctcccttcctcctcctccttttcctcctcctctcca
gGATTTTTGGTGCCAGGAGACTTCTGCGATACAAGCGACCCGATTTTAAG
AAGGCATATGTGACCCTTGGAGAGGAGGTGGAAGCGGGACAAGGAGGAGG
GGCGGTATGAGGGAAGGAAGGAGGGAGGGAAGAGAGGATAAGACAAACGG
AAAGAATGAAGAGGAAAAACGCATGTACGCAATGTTTTTTTTTTCTGAAT
GCGAGGATACACATACATACATACATACATACATACATACATACA
back to top

protein sequence of NO08G03900.1

>NO08G03900.1-protein ID=NO08G03900.1-protein|Name=NO08G03900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=101bp
MPFRVNFPSFFMALIRAPTQAQPYQAVFRVSPAMNKLEIREYLTKIYGLS
VRKVMTANMAGRRKRIFGARRLLRYKRPDFKKAYVTLGEEVEAGQGGGAV
*
back to top
Synonyms
Publications