NO08G03500, NO08G03500 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO08G03500 vs. NCBI_GenBank
Match: EJK46744.1 (hypothetical protein THAOC_34573 [Thalassiosira oceanica]) HSP 1 Score: 176.4 bits (446), Expect = 1.100e-40 Identity = 107/254 (42.13%), Postives = 154/254 (60.63%), Query Frame = 0 Query: 1 MKVIALLSLASVASAFIAPAPLARRASRSVRMAADDDLSVALPFDKRPPNLDGSLAGDVGFDPVGFSNNP----PRPWLIGGSGRS-LKWYREAEIVHGRVAMLAALGWVFPNIY-HLPGNEDVGVDAFANVNPLGALTTVPSAGLWQIAATVTAIELFRINRVIR--GDKEAGDLGLGQGEGRWNPFGFNYSEEEYAEKQLQEIKNGRLAMVGILGLLLQASVTGKGIVQQLGGSFDVPEAVSKAGNYFPDGV 247 MK+ A+ ASAF APA R+S ++ + + + ALPF P LDGSL GDVGFDP+GFS P P + G+ S L+W REAE+ HGR+A LA +G+++P ++ LPG E G F+ +NP AL+TVP + ++QI E R+ R+ ++ GD+G+G G +NP NY+ EE+AEKQLQEIK+ RLAM+ GL+ QA+ +G ++ QL +F+ PE +KAG + P G+ Sbjct: 1 MKLAIAALTAATASAF-APAQ-TDRSSTALNVQWTEG-TKALPFGSSPDTLDGSLPGDVGFDPIGFSTQPFASFNNPLYVEGNFMSDLEWLREAELAHGRIAQLAVVGFLWPGLFGTLPGAE--GYADFSELNPFKALSTVPESAIYQIIGGCAWFEYQRVVRIKEQGANRVVGDIGIGY-PGAFNPLNLNYTPEEFAEKQLQEIKHCRLAMIAAFGLICQANNSGTDVISQLAPAFEAPEYAAKAGYFLPQGI 248
BLAST of NO08G03500 vs. NCBI_GenBank
Match: XP_005821740.1 (light-harvesting Chl a protein 2 [Guillardia theta CCMP2712] >CAM33405.1 light harvesting complex protein 2 precursor [Guillardia theta] >EKX34760.1 light-harvesting Chl a protein 2 [Guillardia theta CCMP2712]) HSP 1 Score: 139.8 bits (351), Expect = 1.100e-29 Identity = 94/227 (41.41%), Postives = 128/227 (56.39%), Query Frame = 0 Query: 1 MKVIALLSLASVASAFIAPAPLARRASRSVRMAAD-DDLSVALPFDKRPPNLDGSLAGDVGFDPVGFSNNPPRPWLIGGSGRSLKWYREAEIVHGRVAMLAALGWVFPNIYHLPGNEDVGVDAFANVNPLGALTTVPSAGLWQIAATVTAIELFRIN-RVIRGDKEAGDLGLGQGEGRWNPFGFNYSEEEYAEKQLQEIKNGRLAMVGILGLLLQASVTGKGIVQQL 226 ++ I +L+ A+ ASAF APA L RA+RS D S A+PF RPP LDG++AGDVGFDP+GFSN LKW REAE+ HGRV ML LG++ + LP + F P+ A TVP+ GLWQI T+ AIE+ N R+ GD A G G+ ++P + E +L E+K+GRLAM+G+ G+L Q +T + ++QL Sbjct: 2 LRAILVLAAAASASAF-APAALPTRAARSSTQGLKMQDRSYAVPFLSRPPALDGTMAGDVGFDPLGFSNY-----------FDLKWLREAELKHGRVCMLGTLGFLVQEKFQLP------LPGFGEKLPIEAFFTVPTGGLWQIFFTLGAIEILSNNGRISPGDMFAD--GRAPGDLGFDPLNLSSDESALRRFELAELKHGRLAMIGLGGMLHQQLLTKQPTLEQL 208
BLAST of NO08G03500 vs. NCBI_GenBank
Match: ACU45309.1 (light-harvesting complex protein LHCC4, partial [Rhodomonas sp. CCMP768]) HSP 1 Score: 134.4 bits (337), Expect = 4.700e-28 Identity = 91/231 (39.39%), Postives = 123/231 (53.25%), Query Frame = 0 Query: 2 KVIALLSLASVASAFIAPAPLARRASRSVRMAADDDLSVALPFDKRPPNLDGSLAGDVGFDPVGFSNNPPRPWLIGGSGRSLKWYREAEIVHGRVAMLAALGWVFPNIYHLPGNEDVGVDAFAN-VNPLGALTTVPSAGLWQIAATVTAIELFRIN-RVIRGD-----KEAGDLGLGQGEGRWNPFGFNYSEEEYAEKQLQEIKNGRLAMVGILGLLLQASVTGKGIVQQL 226 + I L + + ASAF A L R + R+ A+PF +RPP LDGSLAGDVGFDPVGFSN L+W REAE+ HGRV ML G + LP F+N P+ VPSAGLWQ+ T+ A+E F ++ GD ++AGDLG ++P G + + A ++L E+KNGRLAM+ G+L Q +TG+G ++QL Sbjct: 2 RCILLAAAVASASAFAPSAMLPRTSGRAAVSRGPRMQENAVPFLERPPALDGSLAGDVGFDPVGFSNY-----------FDLRWLREAELKHGRVCMLGVTGLLVQEFVTLP--------QFSNGKTPVDDFFVVPSAGLWQVFFTIGAVEFFSNGFKLTPGDMFSEGRDAGDLG-------FDPLGCGKNPDALARRRLVEVKNGRLAMIAFGGMLHQQLLTGQGTIEQL 206
BLAST of NO08G03500 vs. NCBI_GenBank
Match: EWM24914.1 (light-harvesting protein [Nannochloropsis gaditana]) HSP 1 Score: 134.4 bits (337), Expect = 4.700e-28 Identity = 94/224 (41.96%), Postives = 122/224 (54.46%), Query Frame = 0 Query: 1 MKVIALLSLAS---VASAFIAPAPLARRASRSVRMAADDDLSVALPFDKRPPNLDGSLAGDVGFDPVGFSNNPPRPWLIGGSGRSLKWYREAEIVHGRVAMLAALGWVFPNIYHLPGNEDVGVDAFANVNPLGALTTVPSAGLWQIAATVTAIELFRINRVIRGDKEAGDLG---LGQGEGRWNPFGFNYSEEEYAEKQLQEIKNGRLAMVGILGLLLQASVTG 219 MK +LLSL + +ASAF+APAP RA V M S ALPF P LDGSL GD GFDP+G S+ +LK+ R AE+ HGRVAML LGWV HLPG + +A NPL A+ VP QI + AIEL ++R DK DLG + +G+ SE++ + +L+E+KNGRLAM+ I+GL+ Q + TG Sbjct: 1 MKFASLLSLLAAPLLASAFLAPAPKTTRARGVVSMVQ----SKALPFLAAPKKLDGSLVGDFGFDPMGISDQV----------ANLKYVRAAELKHGRVAMLGFLGWVVTQFVHLPG------EIYAESNPLKAIAAVPLISHVQIFLFIAAIELATLDRTYTADK-PWDLGFDPMNMSKGK--------SEQQMKDLELKELKNGRLAMIAIIGLMAQTAYTG 195
BLAST of NO08G03500 vs. NCBI_GenBank
Match: XP_005821765.1 (light-harvesting Chl a protein 9 [Guillardia theta CCMP2712] >CAM33412.1 light harvesting complex protein 9 precursor [Guillardia theta] >EKX34785.1 light-harvesting Chl a protein 9 [Guillardia theta CCMP2712]) HSP 1 Score: 129.8 bits (325), Expect = 1.200e-26 Identity = 86/229 (37.55%), Postives = 119/229 (51.97%), Query Frame = 0 Query: 1 MKVIALLSLASVASAFIAPAPLA--RRASRSVRMAADDDLSVALPFDKRPPNLDGSLAGDVGFDPVGFSNNPPRPWLIGGSGRSLKWYREAEIVHGRVAMLAALGWVFPNIYHLPGNEDVGVDAFANVNPLG--ALTTVPSAGLWQIAATVTAIELFRINRVIRGDKEAGDLGLGQGEGRWNPFGFNYSEEEYAEKQLQEIKNGRLAMVGILGLLLQASVTGKGIVQQL 226 ++ + + + ASAF P A R + +V +S ++PF RP LDG + GDVGFDP GFS S +KW RE+E+ HGRV MLA+LG++ HLP A NP+G A VP+ GLWQI A + AIE F N + G D G G ++P GF + + A +L E+KNGRLAM+G G++ + +TGKG + L Sbjct: 2 LRAVIAFAACAAASAFAPTLPSAGVRAKTSAVSGMKMQQMSQSVPFLPRPAALDGKMVGDVGFDPFGFS-----------SKYDIKWLRESELKHGRVCMLASLGYIVQEFVHLPFE--------ATSNPVGSEAFYQVPAGGLWQIFAFIGAIEHFSHNFKMSGSTMFSD-GRTPGNFGFDPLGFGKNPQARARYELAELKNGRLAMLGFSGMIHGSFITGKGPINAL 210
BLAST of NO08G03500 vs. NCBI_GenBank
Match: XP_005828838.1 (light-harvesting Chl a protein 17 [Guillardia theta CCMP2712] >EKX41858.1 light-harvesting Chl a protein 17 [Guillardia theta CCMP2712]) HSP 1 Score: 127.1 bits (318), Expect = 7.600e-26 Identity = 89/241 (36.93%), Postives = 130/241 (53.94%), Query Frame = 0 Query: 2 KVIALLSLASVASAFIAPAPLARRASR-------SVRMAAD---DDLSV-ALPFDKRPPNLDGSLAGDVGFDPVGFSNNPPRPWLIGGSGRSLKWYREAEIVHGRVAMLAALGWVFPNIYHLPGNEDVGVDAFANVNPLGALTTVPSAGLWQIAATVTAIELFRIN-RVIRGD-----KEAGDLGLGQGEGRWNPFGFNYSEEEYAEKQLQEIKNGRLAMVGILGLLLQASVTGKGIVQQL 226 + + + + A+ A+AF A L R +R S+++ D LS+ A+PF +RPP LDG+LAGDVGFDPVGFSN ++W REAE+ HGRV ML G + +LP ++ P+ VP+AGLWQ+ T+ AIE F ++ GD +EAGDLG ++P G + E A ++L E+KNGRLAM+ G++ Q +T +G ++QL Sbjct: 3 RALLVAACAASAAAFAPSAVLPRAGARVAASKGPSMQLWGDGTAQGLSINAVPFLQRPPALDGTLAGDVGFDPVGFSNY-----------IDIRWLREAELKHGRVCMLGVTGLIAQEFVNLPMFQN-------GKTPVDDFFVVPAAGLWQVFFTIGAIEFFTNGFKLTPGDMFSEGREAGDLG-------FDPLGCGKNPEALARRRLVEVKNGRLAMIAFGGMIHQQLLTKQGTIEQL 218
BLAST of NO08G03500 vs. NCBI_GenBank
Match: XP_005853464.1 (light-harvesting protein [Nannochloropsis gaditana CCMP526] >EKU22896.1 light-harvesting protein [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 126.3 bits (316), Expect = 1.300e-25 Identity = 84/221 (38.01%), Postives = 121/221 (54.75%), Query Frame = 0 Query: 1 MKVIALLSLASVASAFIAPAPLARRASRSVRMAADDDLSVALPFDKRPPNLDGSLAGDVGFDPVGFSNNPPRPWLIGGSGRSLKWYREAEIVHGRVAMLAALGWVFPNIYHLPGNEDVGVDAFANVNPLGALTTVPSAGLWQI---AATVTAIELFRINRVIRGDKEAGDLGLGQGEGRWNPFGFNYSEEEYAEKQLQEIKNGRLAMVGILGLLLQASVTG 219 MK+++ L A+AF+ P P+ RA +V M A+ S ++PF RPP LDG+ GDVGFDPVGF++ WL L + +EAEI H R+AMLA LGW+ + HLPG D A + V S L QI + AI + I++++ G G G+ +++P GF E+ + QL E+KNGRLAM+ G++ QA++TG Sbjct: 1 MKLLSFACLIGAAAAFVPPMPVTTRARGAVSMMAEK--SKSIPFLPRPPALDGTAPGDVGFDPVGFTS-----WL------PLAYLQEAEIKHCRIAMLATLGWIVADFVHLPG------DVHAVSSLAAHDVAVKSGALAQILIWTSIAEAISVVAISQMLEGS------GRQPGDFKFDPLGFAKDEQTLKKLQLNELKNGRLAMLAFSGIVTQAALTG 196
BLAST of NO08G03500 vs. NCBI_GenBank
Match: EWM22167.1 (light-harvesting protein [Nannochloropsis gaditana]) HSP 1 Score: 126.3 bits (316), Expect = 1.300e-25 Identity = 84/221 (38.01%), Postives = 121/221 (54.75%), Query Frame = 0 Query: 1 MKVIALLSLASVASAFIAPAPLARRASRSVRMAADDDLSVALPFDKRPPNLDGSLAGDVGFDPVGFSNNPPRPWLIGGSGRSLKWYREAEIVHGRVAMLAALGWVFPNIYHLPGNEDVGVDAFANVNPLGALTTVPSAGLWQI---AATVTAIELFRINRVIRGDKEAGDLGLGQGEGRWNPFGFNYSEEEYAEKQLQEIKNGRLAMVGILGLLLQASVTG 219 MK+++ L A+AF+ P P+ RA +V M A+ S ++PF RPP LDG+ GDVGFDPVGF++ WL L + +EAEI H R+AMLA LGW+ + HLPG D A + V S L QI + AI + I++++ G G G+ +++P GF E+ + QL E+KNGRLAM+ G++ QA++TG Sbjct: 70 MKLLSFACLIGAAAAFVPPMPVTTRARGAVSMMAEK--SKSIPFLPRPPALDGTAPGDVGFDPVGFTS-----WL------PLAYLQEAEIKHCRIAMLATLGWIVADFVHLPG------DVHAVSSLAAHDVAVKSGALAQILIWTSIAEAISVVAISQMLEGS------GRQPGDFKFDPLGFAKDEQTLKKLQLNELKNGRLAMLAFSGIVTQAALTG 265
BLAST of NO08G03500 vs. NCBI_GenBank
Match: AAB39488.1 (light-harvesting complex I polypeptide [Porphyridium purpureum]) HSP 1 Score: 124.0 bits (310), Expect = 6.400e-25 Identity = 76/198 (38.38%), Postives = 113/198 (57.07%), Query Frame = 0 Query: 31 RMAADDDLSVALPFDKRPPNLDGSLAGDVGFDPVGFSNNPPRPWLIGGSGRSLKWYREAEIVHGRVAMLAALGWVFPNIY---HLPGNEDVGVDAFANVNPLGALTTVPSAGLWQIAATVTAIELFRINRVIRGDKEAGDLGLGQGEGRWNPFGFNYSEEEYAEKQLQEIKNGRLAMVGILGLLLQASVTGKGIVQQL 226 R+A ++S ++PF ++P NLDGS+AGDVGFDP+GFS+ W +K+ REAE+ HGR+ MLAALG+++P I +P E F +NPL A+ +P+AGL QI V +E N+V A G+ +++P G + E L E+KNGRLAM+ + G++ Q +T + I+ QL Sbjct: 36 RIAMMAEMSKSIPFLEKPKNLDGSMAGDVGFDPLGFSDK----W-------DVKFLREAELKHGRICMLAALGFIYPEIMGGKSIPSPEGY----FTELNPLKAVKAIPTAGLLQIVLFVMVLEAISWNKVFMDKTSA------PGDFKFDPLGLKSPKME-----LSEVKNGRLAMIAVGGMIHQVLLTKQPILAQL 207
BLAST of NO08G03500 vs. NCBI_GenBank
Match: CAC10532.1 (light-harvesting protein [Galdieria sulphuraria] >CAC87419.1 light-harvesting protein [Galdieria sulphuraria]) HSP 1 Score: 124.0 bits (310), Expect = 6.400e-25 Identity = 72/190 (37.89%), Postives = 109/190 (57.37%), Query Frame = 0 Query: 39 SVALPFDKRPPNLDGSLAGDVGFDPVGFSNNPPRPWLIGGSGRSLKWYREAEIVHGRVAMLAALGWVFPNIYHLPGNEDVGVDAFANVNPLGALTTVPSAGLWQI---AATVTAIELFRINRVIRGDKEAGDLGLGQGEGRWNPFGFNYSEEEYAEKQLQEIKNGRLAMVGILGLLLQASVTGKGIVQQL 226 S A+PF K PP+LDGS+ GDVGFDP+GFS S L++ RE+E+ H R+AMLA +G++ HLPG D F+N +P+ A+ VP AG QI A + I++ I ++G++E G G ++P G ++ + L E+KNGRLAM+ + ++Q+S + +GI+ QL Sbjct: 55 SRAIPFLKAPPSLDGSMVGDVGFDPLGFS-----------SIIDLRYLRESELKHCRIAMLAVVGFIVQEFIHLPG------DVFSNPHPMQAIGQVPVAGWVQIFLLVAILEMIDIAAIKETLQGNREPGYFG-------FDPLGLAKDKQAHDRYLLSELKNGRLAMIASIAFMVQSSRSNEGIIAQL 220 The following BLAST results are available for this feature:
BLAST of NO08G03500 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO08G03500 ID=NO08G03500|Name=NO08G03500|organism=Nannochloropsis oceanica|type=gene|length=741bpback to top protein sequence of NO08G03500.1 >NO08G03500.1-protein ID=NO08G03500.1-protein|Name=NO08G03500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=247bpback to top Synonyms
Publications
|