NO08G03500.1, NO08G03500.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G03500.1
Unique NameNO08G03500.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length741
Alignment locationchr8:975176..975916 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:975176..975916 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO08G03500.1 vs.
Match: XP_005854284.1 (light-harvesting protein [Nannochloropsis gaditana CCMP526]; EKU22075.1 light-harvesting protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 469.2 bits (1206), Expect = 8.100e-129
Identity = 232/246 (94.31%), Postives = 239/246 (97.15%), Query Frame = 0
Query:    1 MKVIALLSLASVASAFIAPAPLARRASRSVRMAADDDLSVALPFDKRPPNLDGSLAGDVGFDPVGFSNNPPRPWLIGGSGRSLKWYREAEIVHGRVAMLAALGWVFPNIYHLPGNEDVGVDAFANVNPLGALTTVPSAGLWQIAATVTAIELFRINRVIRGDKEAGDLGLGQGEGRWNPFGFNYSEEEYAEKQLQEIKNGRLAMVGILGLLLQASVTGKGIVQQLGGSFDVPEAVSKAGNYFPDGV 247
            M+VIALLSLAS+ASAFIAP PLARRA+ +VRMAADDDLS ALPFDKRPPNLDGSL GDVGFDPVGFSNNPPRPWLIGGSGRSLKWYREAEIVHGRVAMLAALGWVFPNIYHLPGNEDVGVDAFAN+NP GALTTVP+AGLWQIAATV AIELFR+NRVIRGDKEAGDLGLGQGEGRWNPFGFNYSEEEYAEKQLQEIKNGRLAMVGILGLLLQASVTGKGIVQQLGGSFDVPEAVSKAG YFPDGV
Sbjct:    1 MRVIALLSLASMASAFIAPTPLARRATGAVRMAADDDLSTALPFDKRPPNLDGSLPGDVGFDPVGFSNNPPRPWLIGGSGRSLKWYREAEIVHGRVAMLAALGWVFPNIYHLPGNEDVGVDAFANLNPFGALTTVPAAGLWQIAATVGAIELFRVNRVIRGDKEAGDLGLGQGEGRWNPFGFNYSEEEYAEKQLQEIKNGRLAMVGILGLLLQASVTGKGIVQQLGGSFDVPEAVSKAGYYFPDGV 246          
The following BLAST results are available for this feature:
BLAST of NO08G03500.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854284.18.100e-12994.31light-harvesting protein [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G03500NO08G03500Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G03500.1NO08G03500.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G03500.1.cds1NO08G03500.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G03500.1 ID=NO08G03500.1|Name=NO08G03500.1|organism=Nannochloropsis oceanica|type=mRNA|length=741bp
ATGAAGGTTATTGCCCTCTTGTCCCTGGCCTCGGTAGCGAGCGCCTTCAT
TGCCCCTGCGCCCCTGGCCCGCCGTGCCTCCCGCTCTGTGCGCATGGCCG
CCGACGACGACCTCTCCGTCGCCCTGCCTTTCGACAAGCGCCCCCCTAAC
CTGGATGGTAGCCTTGCCGGTGATGTTGGATTTGACCCGGTGGGTTTCTC
CAACAATCCCCCCCGCCCTTGGTTGATTGGCGGCTCTGGCCGTTCCCTCA
AGTGGTACCGCGAGGCAGAGATCGTCCACGGCCGCGTGGCCATGCTTGCC
GCCCTCGGATGGGTTTTCCCCAACATCTACCACTTGCCCGGTAATGAGGA
TGTGGGCGTAGATGCCTTTGCAAACGTGAACCCCCTGGGCGCCTTGACCA
CAGTCCCGTCCGCGGGCCTCTGGCAGATTGCGGCCACCGTCACTGCCATT
GAGCTTTTCCGCATCAACCGCGTCATTCGTGGAGATAAGGAGGCAGGGGA
CCTCGGCCTCGGCCAAGGTGAGGGACGTTGGAACCCGTTTGGCTTCAACT
ATTCGGAGGAGGAGTACGCCGAGAAGCAGTTGCAGGAGATCAAGAATGGC
CGACTGGCCATGGTGGGCATCCTCGGCCTCCTCCTCCAGGCGTCGGTGAC
GGGCAAGGGGATCGTCCAACAGCTCGGCGGCTCGTTCGACGTGCCCGAGG
CTGTTTCTAAGGCTGGAAACTACTTCCCGGACGGCGTCTAA
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protein sequence of NO08G03500.1

>NO08G03500.1-protein ID=NO08G03500.1-protein|Name=NO08G03500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=247bp
MKVIALLSLASVASAFIAPAPLARRASRSVRMAADDDLSVALPFDKRPPN
LDGSLAGDVGFDPVGFSNNPPRPWLIGGSGRSLKWYREAEIVHGRVAMLA
ALGWVFPNIYHLPGNEDVGVDAFANVNPLGALTTVPSAGLWQIAATVTAI
ELFRINRVIRGDKEAGDLGLGQGEGRWNPFGFNYSEEEYAEKQLQEIKNG
RLAMVGILGLLLQASVTGKGIVQQLGGSFDVPEAVSKAGNYFPDGV*
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mRNA from alignment at chr8:975176..975916-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G03500.1 ID=NO08G03500.1|Name=NO08G03500.1|organism=Nannochloropsis oceanica|type=mRNA|length=741bp|location=Sequence derived from alignment at chr8:975176..975916- (Nannochloropsis oceanica)
ATGAAGGTTATTGCCCTCTTGTCCCTGGCCTCGGTAGCGAGCGCCTTCAT TGCCCCTGCGCCCCTGGCCCGCCGTGCCTCCCGCTCTGTGCGCATGGCCG CCGACGACGACCTCTCCGTCGCCCTGCCTTTCGACAAGCGCCCCCCTAAC CTGGATGGTAGCCTTGCCGGTGATGTTGGATTTGACCCGGTGGGTTTCTC CAACAATCCCCCCCGCCCTTGGTTGATTGGCGGCTCTGGCCGTTCCCTCA AGTGGTACCGCGAGGCAGAGATCGTCCACGGCCGCGTGGCCATGCTTGCC GCCCTCGGATGGGTTTTCCCCAACATCTACCACTTGCCCGGTAATGAGGA TGTGGGCGTAGATGCCTTTGCAAACGTGAACCCCCTGGGCGCCTTGACCA CAGTCCCGTCCGCGGGCCTCTGGCAGATTGCGGCCACCGTCACTGCCATT GAGCTTTTCCGCATCAACCGCGTCATTCGTGGAGATAAGGAGGCAGGGGA CCTCGGCCTCGGCCAAGGTGAGGGACGTTGGAACCCGTTTGGCTTCAACT ATTCGGAGGAGGAGTACGCCGAGAAGCAGTTGCAGGAGATCAAGAATGGC CGACTGGCCATGGTGGGCATCCTCGGCCTCCTCCTCCAGGCGTCGGTGAC GGGCAAGGGGATCGTCCAACAGCTCGGCGGCTCGTTCGACGTGCCCGAGG CTGTTTCTAAGGCTGGAAACTACTTCCCGGACGGCGTCTAA
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Coding sequence (CDS) from alignment at chr8:975176..975916-

>NO08G03500.1 ID=NO08G03500.1|Name=NO08G03500.1|organism=Nannochloropsis oceanica|type=CDS|length=741bp|location=Sequence derived from alignment at chr8:975176..975916- (Nannochloropsis oceanica)
ATGAAGGTTATTGCCCTCTTGTCCCTGGCCTCGGTAGCGAGCGCCTTCAT
TGCCCCTGCGCCCCTGGCCCGCCGTGCCTCCCGCTCTGTGCGCATGGCCG
CCGACGACGACCTCTCCGTCGCCCTGCCTTTCGACAAGCGCCCCCCTAAC
CTGGATGGTAGCCTTGCCGGTGATGTTGGATTTGACCCGGTGGGTTTCTC
CAACAATCCCCCCCGCCCTTGGTTGATTGGCGGCTCTGGCCGTTCCCTCA
AGTGGTACCGCGAGGCAGAGATCGTCCACGGCCGCGTGGCCATGCTTGCC
GCCCTCGGATGGGTTTTCCCCAACATCTACCACTTGCCCGGTAATGAGGA
TGTGGGCGTAGATGCCTTTGCAAACGTGAACCCCCTGGGCGCCTTGACCA
CAGTCCCGTCCGCGGGCCTCTGGCAGATTGCGGCCACCGTCACTGCCATT
GAGCTTTTCCGCATCAACCGCGTCATTCGTGGAGATAAGGAGGCAGGGGA
CCTCGGCCTCGGCCAAGGTGAGGGACGTTGGAACCCGTTTGGCTTCAACT
ATTCGGAGGAGGAGTACGCCGAGAAGCAGTTGCAGGAGATCAAGAATGGC
CGACTGGCCATGGTGGGCATCCTCGGCCTCCTCCTCCAGGCGTCGGTGAC
GGGCAAGGGGATCGTCCAACAGCTCGGCGGCTCGTTCGACGTGCCCGAGG
CTGTTTCTAAGGCTGGAAACTACTTCCCGGACGGCGTCTAA
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Synonyms
Publications