NO08G03060, NO08G03060 (gene) Nannochloropsis oceanica

Overview
NameNO08G03060
Unique NameNO08G03060
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1035
Alignment locationchr8:850298..851332 +

Link to JBrowse

Properties
Property NameValue
DescriptionType ii inositol--trisphosphate 5-phosphatase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:850298..851332 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036691Endo/exonu/phosph_ase_sf
Vocabulary: Biological Process
TermDefinition
GO:0046856phosphatidylinositol dephosphorylation
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO08G03060 vs. NCBI_GenBank
Match: EWM26700.1 (type ii inositol- -trisphosphate 5-phosphatase [Nannochloropsis gaditana])

HSP 1 Score: 243.4 bits (620), Expect = 1.000e-60
Identity = 147/291 (50.52%), Postives = 178/291 (61.17%), Query Frame = 0 
Query:   55 ATTWAELLQDDELKQGMDIGDLFYGFQEGKIRLPPSYRRAKGLNGECGDYTDAGELKKAFSTAVKEKSRPLHSLNRGL--THKLYRGL--DNFGHSKKHRLXXXXXXXXXXXXXXYTSKGISFDIRLAESCRVDSSLRSLEVEGEVVVGAGGGVGGLEGGR-GDMSWVSMRATTGMTMTTPNYSGNSSTRISAPIPSYTDRILLHVVEDFRDRPSLGPYEICDALVHSDHRPVSTLVTARVNVGVRGLNACQQASEILHDPTVVQGRDIVTAHDACFYLLELTDVRVELFA 341
            A++W +LL+DDE++QGM+ G +FYGFQEGKIR PPSYRR KG +GECGDY D   LK A+ST VKEK+  L  LNRGL      YR L  D+ G + + +               Y S G        ES    +  RS           G G+   E GR G+    S RA  G          +++TR    IPSYTDRILLHVVEDF+DR  LGPYE+CDAL  SDHRPVSTLVTARVNV VRGLN+  QA   L +P++V  RD++T HDACFY+LELTD+RVEL A
Sbjct:  792 ASSWEQLLRDDEMRQGMEKGAIFYGFQEGKIRFPPSYRRIKGPHGECGDYCDVETLKTAYSTVVKEKTLSLKKLNRGLRILAPYYRFLQRDSQGQALEEQ--------SSSRTPSYASSG-------WESSSTRAFSRSYN---------GSGMENGEDGRDGEDVSASSRAPAG----AKKVQRHATTR----IPSYTDRILLHVVEDFKDRIRLGPYEMCDALQGSDHRPVSTLVTARVNVAVRGLNSFHQAKSCLQNPSIVHNRDVITVHDACFYILELTDLRVELLA 1050
The following BLAST results are available for this feature:
BLAST of NO08G03060 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26700.11.000e-6050.52type ii inositol- -trisphosphate 5-phosphatase [Na... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G03060.1NO08G03060.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G03060.1NO08G03060.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G03060 ID=NO08G03060|Name=NO08G03060|organism=Nannochloropsis oceanica|type=gene|length=1035bp
ATGTTCTCCTTCATGGCCTTCCTCTCAACAAGGCGTTCTGACCCCCACTG
TTCCGCAGCTATCAGCAGGAGCCCCTTTGGGCGGATCGTGGGGTCCTCCT
GTACCCTCCTCCGAGGGCGCAAACCGACTTTTACATCACAATCGCCCATG
GTGTCACAGAAAGCGACAACTTGGGCAGAGCTTTTGCAGGATGATGAATT
GAAGCAAGGGATGGATATAGGTGATTTGTTCTATGGATTCCAAGAAGGGA
AGATCCGCCTTCCTCCTTCTTATCGGCGCGCCAAAGGCCTAAATGGCGAG
TGTGGGGATTATACAGATGCTGGTGAATTGAAAAAGGCATTTAGCACTGC
TGTCAAGGAAAAATCACGGCCCCTGCACAGTCTAAATCGTGGCCTGACCC
ATAAACTGTATCGTGGCTTGGATAATTTTGGCCATTCAAAGAAGCATAGG
TTGCAGCAAGAGCAGCAGGAGCAGCAGGAGCAGCAGGAGCAGGTGTATAC
CAGCAAAGGCATTTCGTTTGACATCCGTCTGGCGGAATCCTGTCGTGTGG
ATAGCAGCCTTCGATCGCTGGAGGTGGAGGGTGAAGTTGTCGTCGGTGCA
GGCGGGGGAGTGGGAGGATTGGAAGGAGGTAGAGGAGATATGTCTTGGGT
ATCTATGAGGGCTACAACAGGGATGACAATGACGACTCCTAACTATAGCG
GTAACAGCAGCACACGAATATCTGCCCCTATTCCATCATACACCGATCGA
ATCTTGCTGCACGTGGTGGAGGACTTTCGAGACCGACCTTCTCTTGGTCC
ATACGAGATATGCGATGCCCTTGTACACTCGGACCACAGGCCTGTATCTA
CTCTTGTAACTGCTCGAGTGAATGTGGGCGTAAGGGGGCTCAACGCATGT
CAGCAGGCAAGCGAAATCCTGCACGATCCGACGGTTGTTCAAGGGAGGGA
TATCGTGACGGCACATGATGCGTGTTTCTATTTATTGGAGTTGACGGACG
TGAGGGTCGAATTGTTCGCGGGGGGTTTGACCTGA
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protein sequence of NO08G03060.1

>NO08G03060.1-protein ID=NO08G03060.1-protein|Name=NO08G03060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=345bp
MFSFMAFLSTRRSDPHCSAAISRSPFGRIVGSSCTLLRGRKPTFTSQSPM
VSQKATTWAELLQDDELKQGMDIGDLFYGFQEGKIRLPPSYRRAKGLNGE
CGDYTDAGELKKAFSTAVKEKSRPLHSLNRGLTHKLYRGLDNFGHSKKHR
LQQEQQEQQEQQEQVYTSKGISFDIRLAESCRVDSSLRSLEVEGEVVVGA
GGGVGGLEGGRGDMSWVSMRATTGMTMTTPNYSGNSSTRISAPIPSYTDR
ILLHVVEDFRDRPSLGPYEICDALVHSDHRPVSTLVTARVNVGVRGLNAC
QQASEILHDPTVVQGRDIVTAHDACFYLLELTDVRVELFAGGLT*
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Synonyms
Publications