NO08G02770, NO08G02770 (gene) Nannochloropsis oceanica

Overview
NameNO08G02770
Unique NameNO08G02770
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1110
Alignment locationchr8:780521..781630 +

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:780521..781630 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
Vocabulary: INTERPRO
TermDefinition
IPR036770Ankyrin_rpt-contain_sf
IPR011011Znf_FYVE_PHD
IPR017455Znf_FYVE-rel
IPR000306Znf_FYVE
Homology
BLAST of NO08G02770 vs. NCBI_GenBank
Match: EJK73225.1 (hypothetical protein THAOC_05161 [Thalassiosira oceanica])

HSP 1 Score: 119.0 bits (297), Expect = 3.100e-23
Identity = 76/250 (30.40%), Postives = 121/250 (48.40%), Query Frame = 0
Query:  134 RPAYITMGFYGTEEGALAACRNHAP---PVWAEPVKGCVCYMCLDGKNLYKSPLHCRNCGQLVCRKCS-KSRWPQGMLPSTYH---NNERTVRICDACNHLAWNFRRALKDGDWTRVLELC-ASGNVNIWTPFLVESVRE--YPVHCAAEGGNLEVLRWLIDELGCPLY---------ETTDG-----------AAPLV------TQKGDSVLGVAARYQRTAIMRWLVTVKGCKTSEIVCRQLLWGTID 348
            + A     F   +E   AA  N +P   P   EP     C +C     L+K P HCRNCG ++C K S  + WP+ M+P T++    N+  V +C +C+ +A  F  +L  G      EL   + N+N+ TPF+  S  E  +P+H +   GN+++LRWL+D+  CPL+          T+ G           ++P V      T KG SV+ +AA  +   I+ +LV+ K     E+  ++L  G ++
Sbjct:  111 KAAQRAFSFQSEKEARAAAAANSSPVLIPFKNEP----SCQLCDANFTLFKRPRHCRNCGIVICSKFSCMAHWPKRMIPETFYTKKKNQSRVSVCTSCDIIAKRFHHSLICGQLDTAKELFETTRNINLRTPFVARSSSEDFFPIHSSIISGNVKLLRWLVDDQHCPLHMAEHSGVKSGTSGGVLQSLRDPHRQSSPRVFTPTIKTSKGRSVIDLAAETKNMDILTYLVSEKSVSVFELNNKELALGALE 356          
BLAST of NO08G02770 vs. NCBI_GenBank
Match: GAX16981.1 (hypothetical protein FisN_5Hh360 [Fistulifera solaris])

HSP 1 Score: 110.5 bits (275), Expect = 1.100e-20
Identity = 72/224 (32.14%), Postives = 105/224 (46.88%), Query Frame = 0
Query:  102 YHVRQRENGAWQATVSLVQPFVRGLFTDPQGMRPAYIT-MGF-YGTEEGALAACRNHAPPVWAEPVKGCVCYMCLDGKNLYKSPLHCRNCGQLVCRKCSKSRWPQGMLPSTYHNNER-TVRICDACNHLAWNFRRALKDGDWTRVLELCASGNVNIWTPFL-VESVREYPVHCAAEGGNLEVLRWLIDELGCPLYETTDGAAPLVTQKGDSVLGVAARYQRTAI 322
            Y + +R    W    SL         + P    P  I  + F + TE+ A   C+++APP  +      VC +C    N   +  HCRNCG  VC KCS  RW   M+P TY ++   T R+C +C+ L+  F  +L  G +     L  +GNVN+ T F  +     +P+H A  GG+ E++RWL+D   CP+   TD        K  S+L V     RT +
Sbjct:   25 YKIIKRTLAQWSVHRSLTTQNWIATISRPDQQNPEKIRHIQFPFATEKEARTFCKSYAPPKMS---SSTVCEICATHPN--PTVRHCRNCGASVCDKCS-VRWGARMVPKTYSSSAALTQRVCKSCDWLSNAFCMSLLKGRFAEAQTLFQTGNVNLRTSFADIREEAMFPIHTAVMGGSFELVRWLVDVQLCPISVRTD-------PKTGSMLSVQTSAGRTLL 235          
BLAST of NO08G02770 vs. NCBI_GenBank
Match: GAX25276.1 (hypothetical protein FisN_5Lh360 [Fistulifera solaris])

HSP 1 Score: 109.4 bits (272), Expect = 2.400e-20
Identity = 69/219 (31.51%), Postives = 106/219 (48.40%), Query Frame = 0
Query:  105 RQRENGAWQATVSLVQPFVRGLFTDPQGMRPAYITMGFYGTEEGALAACRNHAPPVWAEPVKGCVCYMCLDGKNLYKSPLHCRNCGQLVCRKCSKSRWPQGMLPSTYHNNER-TVRICDACNHLAWNFRRALKDGDWTRVLELCASGNVNIWTPFL-VESVREYPVHCAAEGGNLEVLRWLIDELGCPLYETTDGAAPLVTQKGDSVLGVAARYQRTAI 322
            R +    W AT+S +         +P+ +R        + TE+ A   C+++APP  +  +   VC +C    N   +  HCRNCG  VC KCS  RW   M+P TY ++   T R+C +C+ L+  F  +L  G +     L  +GNVN+ T F  +     +P+H A  GG+ E+++WL+D   CP+   TD        K  S+L V     RT +
Sbjct:   39 RSQTTQNWIATISRLDQ------QNPEKLRHIQFP---FATEKEARTFCKSYAPPKMSSSI---VCEICEAHPN--PTVRHCRNCGASVCDKCS-VRWGARMVPKTYSSSAALTQRVCKSCDWLSNAFCMSLLKGRFAEAQTLFQTGNVNLRTSFADIREEAMFPIHTAVMGGSFELVQWLVDVQLCPISVRTD-------PKTGSMLSVQTSAGRTLL 235          
BLAST of NO08G02770 vs. NCBI_GenBank
Match: XP_002178764.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC49462.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 109.0 bits (271), Expect = 3.200e-20
Identity = 68/216 (31.48%), Postives = 110/216 (50.93%), Query Frame = 0
Query:  143 YGTEEGALAACRNHAPPVWAEPVKGCVCYMCLDGKNLYKSPLHCRNCGQLVCRKCSKSRWPQGMLPSTYHNN--ERTVRICDACNHLAWNFRRALKDGDWTRVLELCASGNVNIWTPFL-VESVREYPVHCAAEGGNLEVLRWLIDELGCPLY----ETTDGAAPLVTQKGDSVLGVAARYQRTAIMRWLVTVKGCKTSEIVCRQLLWGTIDFLLR 352
            + +E  A   C+ ++PP  +  V   +C +C   +   ++  HCRNCG  VC  CS +RW   M+P TY+      TVR+C +C+ L+  F  AL  G +  VL +  +GNVN+ T F  +     +PVHCA  GG+L  L+WL++  GCPL       T+ A  L T    ++L +A + +    +   +   G   S++    L   T++ +L+
Sbjct:  105 FPSEREARRFCKAYSPPRLSTAV---LCQLC---QLTPQAARHCRNCGVTVCDSCS-TRWGIRMVPKTYNPQLLTTTVRVCKSCDWLSNAFCMALLQGRYEDVLTIVETGNVNLRTCFADIHQEAMFPVHCAILGGSLATLQWLVEMQGCPLSVKKDPKTNRALSLQTSASRTLLDLAMKGRPKIDILVYLIQNGLSISDVHDPSLAPKTLEVVLK 313          
BLAST of NO08G02770 vs. NCBI_GenBank
Match: XP_002178762.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC49460.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 107.5 bits (267), Expect = 9.300e-20
Identity = 67/216 (31.02%), Postives = 109/216 (50.46%), Query Frame = 0
Query:  143 YGTEEGALAACRNHAPPVWAEPVKGCVCYMCLDGKNLYKSPLHCRNCGQLVCRKCSKSRWPQGMLPSTYHNN--ERTVRICDACNHLAWNFRRALKDGDWTRVLELCASGNVNIWTPFL-VESVREYPVHCAAEGGNLEVLRWLIDELGCPLY----ETTDGAAPLVTQKGDSVLGVAARYQRTAIMRWLVTVKGCKTSEIVCRQLLWGTIDFLLR 352
            + +E  A   C+ ++PP  +      +C +C   +   ++  HCRNCG  VC  CS +RW   M+P TY+      TVR+C +C+ L+  F  AL  G +  VL +  +GNVN+ T F  +     +PVHCA  GG+L  L+WL++  GCPL       T+ A  L T    ++L +A + +    +   +   G   S++    L   T++ +L+
Sbjct:  105 FPSEREARRFCKAYSPPRLS---TAALCQLC---QLTPQAARHCRNCGVTVCDSCS-TRWGIRMVPKTYNPQLLTTTVRVCKSCDWLSNAFCMALLQGRYEDVLTIVETGNVNLRTCFADIHQEAMFPVHCAILGGSLATLQWLVEMQGCPLSVKKDPKTNRALSLQTSASRTLLDLAMKGRPKIDILVYLIQNGLSISDVHDPSLAPKTLEVVLK 313          
BLAST of NO08G02770 vs. NCBI_GenBank
Match: CBJ32497.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 100.5 bits (249), Expect = 1.100e-17
Identity = 51/139 (36.69%), Postives = 75/139 (53.96%), Query Frame = 0
Query:  178 NLYKSPLHCRNCGQLVCRKCSKSRWPQGMLPSTY--HNNERTVRICDACNHLAWNFRRALKDGDWTRVLELCASGNVNIWTPFLVESVREYPVHCAAEGGNLEVLRWLIDELGCPLYETTDGAAPLVTQKGDSVLGVAA 315
            N   S  +CRNC ++VC  C  + W + M+P  Y    +   +R+C  CN     FR AL  G     +   ++G VN+  P+ V    E PVHCAA GGN+ +L WL++ELGC ++  +D   P+   +  +VLG AA
Sbjct:  516 NSSSSDKNCRNCWRVVCDDCIGTFWARNMVPPRYASEGDGFRMRVCKTCNAAMEAFRTALLLGRAEDAMSAYSTGCVNLDRPYTVFH-GELPVHCAAAGGNVGLLSWLVEELGCSIFTDSDKKVPIRDLRSLTVLGAAA 653          
BLAST of NO08G02770 vs. NCBI_GenBank
Match: OEU09623.1 (hypothetical protein FRACYDRAFT_277364 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 93.2 bits (230), Expect = 1.800e-15
Identity = 47/132 (35.61%), Postives = 69/132 (52.27%), Query Frame = 0
Query:  170 CYMCLDGKNLYK-SPLHCRNCGQLVCRKCSKSRWPQGMLPSTY--------HNNERTVRICDACNHLAWNFRRALKDGDWTRVLELCASGNVNIWTPFL-VESVREYPVHCAAEGGNLEVLRWLIDELGCPL 292
            C+ C    +  K  P +C NCG  +C  CS+ RW   MLP TY          +  T R+C +C+ L+  F  AL  G     + +  SGN+N+   F  +     +P+HCA  GGNL++++WLID  GCP+
Sbjct:   94 CFRCSVKFSTSKCKPCNCNNCGVQICDGCSR-RWGVRMLPKTYLITPNDTNIGSALTARVCKSCDWLSNAFCMALLQGQHNNAVLIHVSGNINLRCCFADIHKEAMFPIHCAVMGGNLDLVKWLIDAHGCPI 224          
BLAST of NO08G02770 vs. NCBI_GenBank
Match: XP_002178989.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC49687.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 84.0 bits (206), Expect = 1.100e-12
Identity = 48/115 (41.74%), Postives = 63/115 (54.78%), Query Frame = 0
Query:  231 FRRALKDGDWTRVLELCASGNVNIWTPF-LVESVREYPVHCAAEGGNLEVLRWLIDELGCPLY------ETTDGA---APLVTQKGDSVLGVAARYQRTAIMRWLVTVKGCKTSE 336
            FR AL DGD  + + L A+GN+NI  PF  V+    YPVH    G +L +LRWL+DE  CP+        T DG      +VT KG S+LG+A       I+R+LV  KG   +E
Sbjct:  203 FRLALLDGDQDKAVALYATGNINIVCPFGNVKGELFYPVHACVLGESLSILRWLVDENCCPIKSVRVNGRTKDGICNYTAIVTSKGRSLLGIAMENNLIPIVRYLVVEKGLSLAE 317          
BLAST of NO08G02770 vs. NCBI_GenBank
Match: XP_002178992.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC49690.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 82.4 bits (202), Expect = 3.200e-12
Identity = 47/115 (40.87%), Postives = 63/115 (54.78%), Query Frame = 0
Query:  231 FRRALKDGDWTRVLELCASGNVNIWTPF-LVESVREYPVHCAAEGGNLEVLRWLIDELGCPLY------ETTDGA---APLVTQKGDSVLGVAARYQRTAIMRWLVTVKGCKTSE 336
            FR AL +GD  + + L A+GN+NI  PF  V+    YPVH    G +L +LRWL+DE  CP+        T DG      +VT KG S+LG+A       I+R+LV  KG   +E
Sbjct:  637 FRLALLEGDQDKAVALYATGNINIVCPFGNVKGELFYPVHACVLGESLSILRWLVDENCCPIKSVRVNGRTKDGICNYTAIVTSKGRSLLGIAMENNLIPIVRYLVVEKGLSLAE 751          
The following BLAST results are available for this feature:
BLAST of NO08G02770 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 19
Match NameE-valueIdentityDescription
EJK73225.13.100e-2330.40hypothetical protein THAOC_05161 [Thalassiosira oc... [more]
GAX16981.11.100e-2032.14hypothetical protein FisN_5Hh360 [Fistulifera sola... [more]
GAX25276.12.400e-2031.51hypothetical protein FisN_5Lh360 [Fistulifera sola... [more]
XP_002178764.13.200e-2031.48predicted protein [Phaeodactylum tricornutum CCAP ... [more]
XP_002178762.19.300e-2031.02predicted protein [Phaeodactylum tricornutum CCAP ... [more]
CBJ32497.11.100e-1736.69conserved unknown protein [Ectocarpus siliculosus][more]
OEU09623.11.800e-1535.61hypothetical protein FRACYDRAFT_277364 [Fragilario... [more]
XP_002178989.11.100e-1241.74predicted protein [Phaeodactylum tricornutum CCAP ... [more]
XP_002178992.13.200e-1240.87predicted protein [Phaeodactylum tricornutum CCAP ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G02770.1NO08G02770.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|525629gene_3608Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G02770.1NO08G02770.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G02770 ID=NO08G02770|Name=NO08G02770|organism=Nannochloropsis oceanica|type=gene|length=1110bp
ATGCCCCATGTCCGCAGCAATACGCAGACCTTGGGTCAGGTCTTGTCGGC
AAGCGGCGCGCGGTTGCAAGCCACCTCCTCTGATCGTGACAAGGTGCGAA
CTACGACGCGAGTCTTAAATTTGGCAAGCCAGTATCTGCAGGTTAAGATG
AATACCTTTTCTTCTTTCGACTTGTCCTCGAGCTTATCAATGTTAGACCC
CGGCGGCAGCAAAAACCCCTCCACCTCCTTGTCTGCCTCCTCCTCCTCGG
GCAATGGTGCCACCTATGGGACCATCCGACCAGTTCCCCGGCAATACCTA
AATTACCACGTCCGGCAACGCGAAAACGGCGCCTGGCAAGCGACCGTGTC
ATTAGTACAGCCCTTTGTCCGTGGGCTTTTCACAGACCCACAGGGCATGC
GCCCGGCCTACATCACCATGGGCTTCTATGGGACGGAAGAAGGGGCCCTG
GCGGCATGTCGAAACCACGCCCCTCCCGTGTGGGCCGAACCTGTGAAAGG
CTGCGTCTGCTACATGTGTCTAGACGGCAAAAATCTATATAAGTCGCCGT
TGCACTGTCGGAATTGCGGGCAATTAGTGTGTCGGAAGTGCTCTAAGTCC
CGTTGGCCTCAGGGCATGCTCCCTTCCACCTACCACAACAATGAGCGTAC
TGTCCGTATCTGTGACGCCTGCAATCATTTAGCATGGAATTTTCGTCGTG
CCTTGAAGGACGGGGATTGGACAAGGGTGCTTGAACTGTGTGCGAGTGGG
AATGTGAACATCTGGACTCCTTTCCTGGTGGAATCGGTGAGGGAGTACCC
GGTGCATTGCGCGGCGGAAGGAGGTAACCTGGAAGTATTACGATGGCTGA
TCGATGAGCTTGGATGTCCTCTATACGAGACTACGGATGGGGCTGCCCCA
CTCGTGACGCAGAAGGGGGATAGTGTGCTCGGGGTGGCGGCGAGGTATCA
AAGGACGGCCATCATGCGGTGGTTGGTGACTGTCAAGGGGTGCAAGACCT
CAGAGATTGTTTGTAGGCAACTGTTGTGGGGAACGATAGACTTTTTGCTG
CGGGAAGAGTGTGGCGGTGAAGGGGGGGAGAAAGGGGGAGGTGTAGTGCG
CGTTGGATGA
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protein sequence of NO08G02770.1

>NO08G02770.1-protein ID=NO08G02770.1-protein|Name=NO08G02770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=370bp
MPHVRSNTQTLGQVLSASGARLQATSSDRDKVRTTTRVLNLASQYLQVKM
NTFSSFDLSSSLSMLDPGGSKNPSTSLSASSSSGNGATYGTIRPVPRQYL
NYHVRQRENGAWQATVSLVQPFVRGLFTDPQGMRPAYITMGFYGTEEGAL
AACRNHAPPVWAEPVKGCVCYMCLDGKNLYKSPLHCRNCGQLVCRKCSKS
RWPQGMLPSTYHNNERTVRICDACNHLAWNFRRALKDGDWTRVLELCASG
NVNIWTPFLVESVREYPVHCAAEGGNLEVLRWLIDELGCPLYETTDGAAP
LVTQKGDSVLGVAARYQRTAIMRWLVTVKGCKTSEIVCRQLLWGTIDFLL
REECGGEGGEKGGGVVRVG*
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Synonyms
Publications