NO08G02770.1, NO08G02770.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G02770.1
Unique NameNO08G02770.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1110
Alignment locationchr8:780521..781630 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:780521..781630 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO08G02770.1 vs.
Match: XP_005856076.1 (hypothetical protein NGA_2123710, partial [Nannochloropsis gaditana CCMP526]; XP_005856158.1 hypothetical protein NGA_2123720, partial [Nannochloropsis gaditana CCMP526]; EKU20203.1 hypothetical protein NGA_2123720, partial [Nannochloropsis gaditana CCMP526]; EKU20286.1 hypothetical protein NGA_2123710, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 248.8 bits (634), Expect = 2.600e-62
Identity = 106/130 (81.54%), Postives = 121/130 (93.08%), Query Frame = 0
Query:  187 RNCGQLVCRKCSKSRWPQGMLPSTYHNNERTVRICDACNHLAWNFRRALKDGDWTRVLELCASGNVNIWTPFLVESVREYPVHCAAEGGNLEVLRWLIDELGCPLYETTDGAAPLVTQKGDSVLGVAARY 317
            RNCGQLVC KCSKSRWP+GMLPSTYHNNE TVR+CDACNHLAWNFRRALK+GD  R LEL ASGN+NIW PF++ESVREYPVHCAAEGGNL++LRWL++ELGCPLYET DGA+PL+T +GDSVLGVA+R+
Sbjct:    1 RNCGQLVCPKCSKSRWPRGMLPSTYHNNESTVRVCDACNHLAWNFRRALKEGDRIRALELFASGNLNIWMPFIIESVREYPVHCAAEGGNLDLLRWLVNELGCPLYETADGASPLLTHRGDSVLGVASRH 130          
The following BLAST results are available for this feature:
BLAST of NO08G02770.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005856076.12.600e-6281.54hypothetical protein NGA_2123710, partial [Nannoch... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G02770NO08G02770Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G02770.1NO08G02770.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G02770.1.cds1NO08G02770.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G02770.1 ID=NO08G02770.1|Name=NO08G02770.1|organism=Nannochloropsis oceanica|type=mRNA|length=1110bp
ATGCCCCATGTCCGCAGCAATACGCAGACCTTGGGTCAGGTCTTGTCGGC
AAGCGGCGCGCGGTTGCAAGCCACCTCCTCTGATCGTGACAAGGTGCGAA
CTACGACGCGAGTCTTAAATTTGGCAAGCCAGTATCTGCAGGTTAAGATG
AATACCTTTTCTTCTTTCGACTTGTCCTCGAGCTTATCAATGTTAGACCC
CGGCGGCAGCAAAAACCCCTCCACCTCCTTGTCTGCCTCCTCCTCCTCGG
GCAATGGTGCCACCTATGGGACCATCCGACCAGTTCCCCGGCAATACCTA
AATTACCACGTCCGGCAACGCGAAAACGGCGCCTGGCAAGCGACCGTGTC
ATTAGTACAGCCCTTTGTCCGTGGGCTTTTCACAGACCCACAGGGCATGC
GCCCGGCCTACATCACCATGGGCTTCTATGGGACGGAAGAAGGGGCCCTG
GCGGCATGTCGAAACCACGCCCCTCCCGTGTGGGCCGAACCTGTGAAAGG
CTGCGTCTGCTACATGTGTCTAGACGGCAAAAATCTATATAAGTCGCCGT
TGCACTGTCGGAATTGCGGGCAATTAGTGTGTCGGAAGTGCTCTAAGTCC
CGTTGGCCTCAGGGCATGCTCCCTTCCACCTACCACAACAATGAGCGTAC
TGTCCGTATCTGTGACGCCTGCAATCATTTAGCATGGAATTTTCGTCGTG
CCTTGAAGGACGGGGATTGGACAAGGGTGCTTGAACTGTGTGCGAGTGGG
AATGTGAACATCTGGACTCCTTTCCTGGTGGAATCGGTGAGGGAGTACCC
GGTGCATTGCGCGGCGGAAGGAGGTAACCTGGAAGTATTACGATGGCTGA
TCGATGAGCTTGGATGTCCTCTATACGAGACTACGGATGGGGCTGCCCCA
CTCGTGACGCAGAAGGGGGATAGTGTGCTCGGGGTGGCGGCGAGGTATCA
AAGGACGGCCATCATGCGGTGGTTGGTGACTGTCAAGGGGTGCAAGACCT
CAGAGATTGTTTGTAGGCAACTGTTGTGGGGAACGATAGACTTTTTGCTG
CGGGAAGAGTGTGGCGGTGAAGGGGGGGAGAAAGGGGGAGGTGTAGTGCG
CGTTGGATGA
back to top

protein sequence of NO08G02770.1

>NO08G02770.1-protein ID=NO08G02770.1-protein|Name=NO08G02770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=370bp
MPHVRSNTQTLGQVLSASGARLQATSSDRDKVRTTTRVLNLASQYLQVKM
NTFSSFDLSSSLSMLDPGGSKNPSTSLSASSSSGNGATYGTIRPVPRQYL
NYHVRQRENGAWQATVSLVQPFVRGLFTDPQGMRPAYITMGFYGTEEGAL
AACRNHAPPVWAEPVKGCVCYMCLDGKNLYKSPLHCRNCGQLVCRKCSKS
RWPQGMLPSTYHNNERTVRICDACNHLAWNFRRALKDGDWTRVLELCASG
NVNIWTPFLVESVREYPVHCAAEGGNLEVLRWLIDELGCPLYETTDGAAP
LVTQKGDSVLGVAARYQRTAIMRWLVTVKGCKTSEIVCRQLLWGTIDFLL
REECGGEGGEKGGGVVRVG*
back to top

mRNA from alignment at chr8:780521..781630+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G02770.1 ID=NO08G02770.1|Name=NO08G02770.1|organism=Nannochloropsis oceanica|type=mRNA|length=1110bp|location=Sequence derived from alignment at chr8:780521..781630+ (Nannochloropsis oceanica)
ATGCCCCATGTCCGCAGCAATACGCAGACCTTGGGTCAGGTCTTGTCGGC AAGCGGCGCGCGGTTGCAAGCCACCTCCTCTGATCGTGACAAGGTGCGAA CTACGACGCGAGTCTTAAATTTGGCAAGCCAGTATCTGCAGGTTAAGATG AATACCTTTTCTTCTTTCGACTTGTCCTCGAGCTTATCAATGTTAGACCC CGGCGGCAGCAAAAACCCCTCCACCTCCTTGTCTGCCTCCTCCTCCTCGG GCAATGGTGCCACCTATGGGACCATCCGACCAGTTCCCCGGCAATACCTA AATTACCACGTCCGGCAACGCGAAAACGGCGCCTGGCAAGCGACCGTGTC ATTAGTACAGCCCTTTGTCCGTGGGCTTTTCACAGACCCACAGGGCATGC GCCCGGCCTACATCACCATGGGCTTCTATGGGACGGAAGAAGGGGCCCTG GCGGCATGTCGAAACCACGCCCCTCCCGTGTGGGCCGAACCTGTGAAAGG CTGCGTCTGCTACATGTGTCTAGACGGCAAAAATCTATATAAGTCGCCGT TGCACTGTCGGAATTGCGGGCAATTAGTGTGTCGGAAGTGCTCTAAGTCC CGTTGGCCTCAGGGCATGCTCCCTTCCACCTACCACAACAATGAGCGTAC TGTCCGTATCTGTGACGCCTGCAATCATTTAGCATGGAATTTTCGTCGTG CCTTGAAGGACGGGGATTGGACAAGGGTGCTTGAACTGTGTGCGAGTGGG AATGTGAACATCTGGACTCCTTTCCTGGTGGAATCGGTGAGGGAGTACCC GGTGCATTGCGCGGCGGAAGGAGGTAACCTGGAAGTATTACGATGGCTGA TCGATGAGCTTGGATGTCCTCTATACGAGACTACGGATGGGGCTGCCCCA CTCGTGACGCAGAAGGGGGATAGTGTGCTCGGGGTGGCGGCGAGGTATCA AAGGACGGCCATCATGCGGTGGTTGGTGACTGTCAAGGGGTGCAAGACCT CAGAGATTGTTTGTAGGCAACTGTTGTGGGGAACGATAGACTTTTTGCTG CGGGAAGAGTGTGGCGGTGAAGGGGGGGAGAAAGGGGGAGGTGTAGTGCG CGTTGGATGA
back to top

Coding sequence (CDS) from alignment at chr8:780521..781630+

>NO08G02770.1 ID=NO08G02770.1|Name=NO08G02770.1|organism=Nannochloropsis oceanica|type=CDS|length=1110bp|location=Sequence derived from alignment at chr8:780521..781630+ (Nannochloropsis oceanica)
ATGCCCCATGTCCGCAGCAATACGCAGACCTTGGGTCAGGTCTTGTCGGC
AAGCGGCGCGCGGTTGCAAGCCACCTCCTCTGATCGTGACAAGGTGCGAA
CTACGACGCGAGTCTTAAATTTGGCAAGCCAGTATCTGCAGGTTAAGATG
AATACCTTTTCTTCTTTCGACTTGTCCTCGAGCTTATCAATGTTAGACCC
CGGCGGCAGCAAAAACCCCTCCACCTCCTTGTCTGCCTCCTCCTCCTCGG
GCAATGGTGCCACCTATGGGACCATCCGACCAGTTCCCCGGCAATACCTA
AATTACCACGTCCGGCAACGCGAAAACGGCGCCTGGCAAGCGACCGTGTC
ATTAGTACAGCCCTTTGTCCGTGGGCTTTTCACAGACCCACAGGGCATGC
GCCCGGCCTACATCACCATGGGCTTCTATGGGACGGAAGAAGGGGCCCTG
GCGGCATGTCGAAACCACGCCCCTCCCGTGTGGGCCGAACCTGTGAAAGG
CTGCGTCTGCTACATGTGTCTAGACGGCAAAAATCTATATAAGTCGCCGT
TGCACTGTCGGAATTGCGGGCAATTAGTGTGTCGGAAGTGCTCTAAGTCC
CGTTGGCCTCAGGGCATGCTCCCTTCCACCTACCACAACAATGAGCGTAC
TGTCCGTATCTGTGACGCCTGCAATCATTTAGCATGGAATTTTCGTCGTG
CCTTGAAGGACGGGGATTGGACAAGGGTGCTTGAACTGTGTGCGAGTGGG
AATGTGAACATCTGGACTCCTTTCCTGGTGGAATCGGTGAGGGAGTACCC
GGTGCATTGCGCGGCGGAAGGAGGTAACCTGGAAGTATTACGATGGCTGA
TCGATGAGCTTGGATGTCCTCTATACGAGACTACGGATGGGGCTGCCCCA
CTCGTGACGCAGAAGGGGGATAGTGTGCTCGGGGTGGCGGCGAGGTATCA
AAGGACGGCCATCATGCGGTGGTTGGTGACTGTCAAGGGGTGCAAGACCT
CAGAGATTGTTTGTAGGCAACTGTTGTGGGGAACGATAGACTTTTTGCTG
CGGGAAGAGTGTGGCGGTGAAGGGGGGGAGAAAGGGGGAGGTGTAGTGCG
CGTTGGATGA
back to top
Synonyms
Publications