NO08G02760, NO08G02760 (gene) Nannochloropsis oceanica

Overview
NameNO08G02760
Unique NameNO08G02760
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length865
Alignment locationchr8:778779..779643 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:778779..779643 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO08G02760 vs. NCBI_GenBank
Match: EWM26592.1 (hypothetical protein Naga_100001g182 [Nannochloropsis gaditana])

HSP 1 Score: 226.5 bits (576), Expect = 6.100e-56
Identity = 115/158 (72.78%), Postives = 134/158 (84.81%), Query Frame = 0 
Query:    1 MPPTTLPPATLRSKSLLRDVRAILKNFQQWPTAAQADSQYQTFIREHFVESQDSADSEVSKARCQQAKDYALMLKNLDRQKDIAMVLSGERAPQRELVKMAAARCGLSVPDAPSQEGISMEDGSKRGYTALRQTWRPDTKSDITKKYSGRVEKRIGKD 159
            MPP+  P A LR K +L DVR+ILKN +QWPTAAQ  SQ+Q  IRE F+E   S+D+E SKAR QQA DYALMLK LDRQKDIA+VLSGERAPQRELVK+AAARCGLSVP+APS EGI +EDG+KRGYTALRQTWRP+ KSD+TKKYS +VE++IGK+
Sbjct:    1 MPPS--PAAALRDKRVLGDVRSILKNLKQWPTAAQPSSQFQAVIREKFLEGHQSSDNEASKARRQQANDYALMLKKLDRQKDIALVLSGERAPQRELVKLAAARCGLSVPEAPSMEGIDLEDGAKRGYTALRQTWRPNVKSDVTKKYSQKVEEKIGKE 156
The following BLAST results are available for this feature:
BLAST of NO08G02760 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26592.16.100e-5672.78hypothetical protein Naga_100001g182 [Nannochlorop... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008759NSK008759Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G02760.1NO08G02760.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G02760.1NO08G02760.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G02760 ID=NO08G02760|Name=NO08G02760|organism=Nannochloropsis oceanica|type=gene|length=865bp
CAGGCTCACTGCTCGACTATCGATCGAGCCATGCCGCCCACGACTTTGCC
TCCTGCGACCCTACGCAGCAAATCAgtaagctataccggtagtactgagg
gtccgtggcctacatgatcgatacttatgcaccactcttcccacagTTGC
TACGCGACGTCCGGGCCATCCTCAAGAACTTCCAGCAGTGGCCTACGGCT
GCCCAGGCGGACAGCCAGTACCAGACATTCATCCGAGAGCATgtacgtgt
aggtcggtgtcgcggccgcaatattattgaaggagacttaaccatcctct
accttatggtcatttaacactcagTTTGTGGAGAGCCAAGACTCCGCAGA
CAGCGAGGTGTCGAAGGCGCGCTGCCAACAAGCCAAGGACTACGCCTTAA
TGCTTAAGAATTTGGACAGGCAAAAGgtacgataaaaataagagagaaac
tgagggatacaacgctcgcagaccactcacacacatcccgtcttgcctca
aaagGACATAGCCATGGTGCTGAGTGGCGAACGGGCCCCGCAACGGGAGC
TGGTCAAGATGGCGGCGGCCCGATGTGGTTTGAGTGTGCCGGATGCGCCT
TCTCAGGAAGGGATTAGTATGGAAGATGGGTCAAAAAGAGGATACACGGC
CTTGCGTCAAACATGGCGGCCCGACACCAAGTCGGATATCACAAAGAAAT
ACAGCGGCCGGGTGGAGAAGCGCATAGGGAAAGATGAAGAGCGCGAGAGG
TAGTTGGAGGACGGTGAAAAAGAAGAAAAATGAAACCATAGAGAATGCCA
TGTTGCATGTTGCCTGTTGCCTTTCGCCGGTGTTGGTGTCGGTTGAGTCA
GTTTAAGAAGGGCAC
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protein sequence of NO08G02760.1

>NO08G02760.1-protein ID=NO08G02760.1-protein|Name=NO08G02760.1|organism=Nannochloropsis oceanica|type=polypeptide|length=164bp
MPPTTLPPATLRSKSLLRDVRAILKNFQQWPTAAQADSQYQTFIREHFVE
SQDSADSEVSKARCQQAKDYALMLKNLDRQKDIAMVLSGERAPQRELVKM
AAARCGLSVPDAPSQEGISMEDGSKRGYTALRQTWRPDTKSDITKKYSGR
VEKRIGKDEERER*
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Synonyms
Publications