NO08G02670, NO08G02670 (gene) Nannochloropsis oceanica

Overview
NameNO08G02670
Unique NameNO08G02670
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4993
Alignment locationchr8:749168..754160 +

Link to JBrowse

Properties
Property NameValue
DescriptionZinc finger, C2H2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:749168..754160 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2/integrase_DNA-bd
Homology
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BLAST of NO08G02670 vs. NCBI_GenBank
Match: EWM26671.1 (Zinc finger, C2H2 [Nannochloropsis gaditana])

HSP 1 Score: 507.7 bits (1306), Expect = 9.800e-140
Identity = 409/1119 (36.55%), Postives = 490/1119 (43.79%), Query Frame = 0 
Query:   26 LGFASTEKTRAASMTTTKGPLIGFSEAHLLQQVHGAGETTMASISRDSTRSSSMDSTASLGHKADAELMVSFLNEIHSTGSAKSNNMNVIVEPTGPVTARPPSPSRLTREKDNTAAWEGNGESLLLCLKTKDTSSPSXXXXXXPYDTPPSTAKDKERKSSWGDQQTMAGVRGQRSSFGPAAF--LKANSSRDWARMEEVDEAEGYREKQQQRGIDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSWSLFNCLVTEAGNGSRKLARQRERAYGCPWYRVGYYRRCHDKYGQDASVYDSDDSEYEESAREGEVEE--------GGQG---GPYRSDLTSVRAMMLRKDKSADRAVAGVGGVPKYHRDWGKLKRRDVTRQQQRMXXXXXXXXVGGRGAQAAGLSERAXXXXXXXXXXXXXXXXYCLGKIAGTGGGWGPSPRRSPSKKEKWGFVGSSSSNGGKATNMSSSSGSLKKSKL---PAPKRQSTALTLSFEVQPNGLIRCKRCGKPNFKNHFALRSHLSHCPGTIHMKEQRMKIEAGLLPPETPLCLPVDEEEREQGPSNAAWVPAYNGSGSGSNLGGNVSRSASGSL-----DYNAP---------GSSTCSNHQFKMLAS-SCSXXXXXXGTSHGFNAFPRLQASPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPTYEGTPLVPNLVQNGKSLVGRTISYHHHHKSVHDWTDVLVRKYRPRSRCHLIVHADGTSEWAMLTDRNTRLDPGFHPSLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLSNPGFHMEEGLTTGASSNSVTTSGGLTCTSTPGAPFSSPGRNAFFSEQENLLLSRRPAKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPAHTSAESYALHLAQHIPTTSFVCRRCTKGFHNKQALGWHTRKGCNGHPGTAVTNQQQPSSSP 1114
            +G    +   A +    K   +GFSEA  LQ VHGAGET + S  RDSTRS SMDS+ +  HKADAEL++SFL E+HSTG     +     E T P       P R   E+D ++AW  +GESLLL L+ K     S                     SS   Q        ++ SF   +   L A+  +   ++    + +  R+    RG                      XXXXXX                                                      SW+LFN LV EAGNGSRKL RQ  R Y CPW+RVGYYRRCHDKYGQDAS+YDS+DS+YEE++   + +         GG     GPY S+ +SVRA ML  DKSADRAVA  GGVPKYHRDWG+LKRR   RQQQR+                      A                  LG +      +   P+R+ SKKEK      +S++GGK+ N+  SSGSLKKSK+    APKRQSTALTLSFEVQ NGLIRCKRCGKPNFKNHFALRSHLSHCPGTIHMKEQRMKIEAGLLPPETPLCLPVDE+ER++GPSNAAWVPA+N S SGS+LG   SRS SGS      D  AP            T S  Q +M AS SC+                 LQ  P                                                LP +EGT LVP  + +G S VGR +SY +H     ++ DV VR YR R  CH +V+ D TSEW +LTDRN R D G   +LS                                            +G+ T  + ++   SG    T    +P  SP RN FFSEQ+ LLL RRP KR                                                                                                                                   +T+AESYA+ LAQH P ++F+CRRC K FHNKQALGWHTRKGC GHPGTA+TN   PS  P
Sbjct:   26 VGNTRADSQNAKTAILGKDFQMGFSEAQ-LQHVHGAGETLVES-CRDSTRSYSMDSSDTSEHKADAELVLSFLTEMHSTGGTGQLSRGK-CESTQPSQKTQKQPERTYFEED-SSAWATDGESLLLSLRAKKPGIAS---------------------SSSSSQLATPETVSKQGSFSSESISTLSAHYVKSPDKLITTSKTDPGRKDSHVRG---------PASPVVECHGDDEXXXXXXKIIVSFRHPSVSNASFSDSGSGELAASSEEETDMWEDNATKPRSPRHPRADSASSWNLFNSLVNEAGNGSRKLERQLTRTYECPWHRVGYYRRCHDKYGQDASIYDSEDSDYEEASIIEQRDSSSGCSRICGGSAREYGPYTSEFSSVRANMLNADKSADRAVA--GGVPKYHRDWGRLKRRGTMRQQQRLKREARGRIPPNYNNVTTHDRIGADAEEDMEVRKHNSAGATNLGNLTAAAREFAVDPQRTASKKEK-----VASNSGGKSKNVHGSSGSLKKSKITGQSAPKRQSTALTLSFEVQENGLIRCKRCGKPNFKNHFALRSHLSHCPGTIHMKEQRMKIEAGLLPPETPLCLPVDEDERQKGPSNAAWVPAFNVSSSGSSLG--ASRSVSGSFSTEASDQPAPPTFQRADSNSRKTASEDQDRMHASTSCASKSDNRNFVRNVPFSDPLQQPP-----------RDPTSSATANSAGTFSFKHEIHTTNTSASSPPEPTSDLPVHEGTALVPAFIADGNSFVGRVVSYKNH--GARNYVDVYVRSYRSRRNCHFVVYPDTTSEWVILTDRNCRWDAGHRANLSDASSSPIRPAAE-------------------------------RKGILTSITESTHFGSG----TPNTASP-RSPPRNVFFSEQDALLLPRRPLKR---------------------------------------KADSVRDEEASSTSFTTLSEERVARKGEKSDKIDTPKPKIRRVDSNESLTASVGAPGPQHYHSHNPTLPYAQHIPHHSTGPPAYPYHVSTTGYTAAESYAMQLAQHTPASTFICRRCAKSFHNKQALGWHTRKGCYGHPGTAITN-NLPSPFP 1012
The following BLAST results are available for this feature:
BLAST of NO08G02670 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26671.19.800e-14036.55Zinc finger, C2H2 [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008770NSK008770Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G02670.1NO08G02670.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|669543gene_3596Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100001g175gene3800Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G02670.1NO08G02670.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G02670 ID=NO08G02670|Name=NO08G02670|organism=Nannochloropsis oceanica|type=gene|length=4993bp
CTCCTTTATTCCATGATGTAGCGCTCATCGTTTTACGAGTTGCTTGACCA
ATATGCATGGCGATCCAGAGCCTTGTACACAGCATGCCTCCGGGTCCATG
CACACGCCATCCTTTTGTCCCCACAAACGACACGTTTGGCCCATGTTGCT
CATGCACCGGTCGCGAGCGCCGACTTGCTTGTCCGTGCCCCACGCACGAG
TGTCAAGGAAGGAGCGGTTGAGCAGCACACCCCTCACATATGCATCTTGA
AATTCATTCCACTGCAAAAAATGGTCCTCTCACCCGCCCACCCCATACCA
CCTTCCCCACACAACACATTACACACATTCAAGAACGACTACGACCACGG
CACCTGACAAGTTCCTCGCCGCGGCATTGTCCAGCCATCGTCTGGTGAAA
CCCCAAGAGGGCCAGGAGAGAAGGAAAACGCGCGCACTGCCGGCATGAGC
GCTGCATGCACCCCTCCGCGTACGCAAGGGGCCGGCCTCACGACGGACAC
CTCGGAAGGCGTGCCCTTATTGGGCTTCGCCTCCACAGAAAAGACCAGGG
CCGCGTCGATGACGACGACCAAAGGACCATTAATTGGCTTCTCCGAGGCT
CATCTGCTGCAGCAGGTGCATGGGGCCGGTGAGACTACCATGGCGAGCAT
CAGCCGAGATTCGACGCGGTCGTCCTCCATGGACAGCACGGCGTCGTTGG
GACACAAGGCGGACGCCGAGCTGATGGTCTCGTTCCTGAACGAGATCCAT
TCCACCGGATCGGCAAAGTCCAACAATATGAATGTAATCGTGGAGCCGAC
GGGCCCGGTCACCGCACGACCACCGTCCCCCTCACGCTTAACCCGCGAGA
AGGACAACACTGCTGCCTGGGAAGGAAACGGCGAGTCGTTGCTCCTATGT
CTCAAGACCAAGGACACCTCCTCGCCTTCGACTTCGTCCTCGTCCTCTCC
CTATGATACTCCACCGTCCACAGCTAAGGACAAGGAGCGCAAGTCTTCTT
GGGGAGACCAACAGACCATGGCAGGCGTGCGTGGTCAACGATCATCGTTC
GGTCCAGCGGCTTTCTTGAAGGCTAATTCTAGTCGGGATTGGGCTCGTAT
GGAGGAGGTGGATGAGGCGGAGGGCTATAGGGAAAAGCAGCAGCAGCGTG
GGATAGACGAGATGGAGGAGGATGATGCCAAGATCATGGTGGCCTTTCGA
CAGACAGCGTCGTCATCGTCTTCGGATTCTGAATCTTCAGGGGGCTTCGG
GGTTTCCTCGTCTTCGTCGTCCTCCTCCTCCTCCTCCGACGACGACGACG
ACGACGAATTAATAATGTCAAGCGACGGTTATCAAGAGATCCATCTTGCG
CGGCAGAAGCAGCAGCAACAGCAGCATCACCGGGCTGCTTCTTCTGGATC
CTGGTCCTTGTTCAATTGCTTGGTGACGGAGGCGGGGAATGGGAGCAGGA
AGCTGGCGAGACAACGTGAGCGTGCCTATGGTTGTCCCTGGTATCGGGTA
GGGTACTATCGACGTTGCCATGACAAATACGGACAAGACGCTTCCGTTTA
CGATTCGGATGACTCAGAGTATGAGGAGAGTGCGAGGGAGGGCGAGGTGG
AGGAGGGAGGCCAGGGAGGACCGTACCGGAGTGACTTGACATCGGTGAGG
GCGATGATGTTGCGGAAGGACAAGTCGGCGGATCGAGCGGTGGCCGGTGT
AGGGGGGGTTCCCAAGTACCATCGAGATTGGGGAAAACTCAAGCGGAGGG
ATGTTACTCGGCAGCAGCAGCGTATGAGGCGGGAGCGGGAGGAGAGAGGG
GTTGGAGGGCGGGGGGCACAGGCAGCAGGATTAAGTGAGAGGGCTGGTGG
TGGTGATGGTGTTGGTGGTCACGGAGAGAGGGAAGGAGGAGGGTATTGCT
TGGGTAAGATTGCAGGAACGGGCGGCGGCTGGGGACCGAGCCCGCGACGC
AGCCCGTCCAAAAAGGAGAAATGGGGTTTCGTGGGGAGCAGCAGCAGCAA
CGGTGGTAAGGCCACGAACATGAGCAGCAGCAGTGGCTCTCTGAAGAAAA
GCAAGCTTCCTGCCCCTAAGCGACAAAGCACAGCCTTGACCCTTTCCTTC
GAAGTGCAGCCAAATGGCCTTATCCGATGCAAGCGTTGCGGAAAGCCCAA
TTTTAAAAATCATTTTGCCCTCCGCTCCCACCTCTCTCACTGCCCCGGCA
CCATTCACATGAAAGAGCAACGAATGAAAATCGAAGCCGGCCTTCTTCCT
CCTGAGACCCCCCTTTGCTTGCCTGTCGATGAGGAGGAGCGGGAGCAAGG
ACCTAGTAATGCTGCGTGGGTGCCAGCCTACAACGGCTCCGGCAGCGGGA
GCAATCTGGGAGGGAATGTCAGCCGCTCAGCCTCCGGTAGCCTGGACTAT
AATGCTCCAGGCAGCAGCACCTGCAGCAACCACCAGTTTAAGATGCTAGC
ATCCTCTTGCTCTTCTTCCTCCGCGAGCAGCGGCACAAGTCACGGCTTCA
ATGCCTTCCCCCGTCTCCAGGCCTCTCCTGGCCAACAGCAGCGGCGGCAG
GAACTCAAACAACAACAACAACAACAACAACAACAACATCGCCTCCCTCC
CCCGACAAGCTTTGACAAAGCAACTGCCTCAAACTCCTCTCCCTCCTCCT
CCGCTCCGGAGCCAACCACAACCCTTCCCACCTACGAAGGCACCCCTCTC
GTCCCCAACTTGGTCCAAAACGGCAAATCCCTCGTAGGTCGTACCATCTC
CTACCACCACCACCACAAATCCGTCCACGATTGGACTGATGTCTTGGTGC
GTAAGTATCGCCCACGAAGCAGATGCCACTTGATTGTACATGCGGACGGT
ACCTCCGAGTGGGCTATGCTCACTGACCGAAATACGCGCCTCGACCCCGG
GTTCCATCCCTCCCTCTCCTCTGCTTCCTCAGCGGCGTCCTGCTCCGATG
AGGAACATGAAGATAAAGGAAAAGGGGAAACCGGTAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCTCTCCACGGCTGTCCAATCCAGGTTTCCACATGGA
GGAGGGCCTGACCACTGGCGCCAGCAGTAACAGTGTCACAACCTCAGGTG
GACTCACGTGTACTTCAACTCCGGGCGCTCCTTTCTCCTCTCCCGGCCGC
AACGCCTTTTTTTCTGAGCAAGAGAATCTCCTCCTCTCCCGTCGCCCGGC
TAAACGCAAGGCCGAGAACAGCAACAGCAGCAGCGGCATCAGCCAAGCTG
AGTCGTCCCCCTCCTCCTCCTCCTCCTTTACCTTCGTCCGTAACGACCAC
CGACGGCAGCAACAACAGCAGCAGGAAGAGGAAGACGAGGAGGAGGAGGG
GGAGGAGGAGAGGGAGGGGGAAGGTATCGAACAACCCATGCCGAAGATCA
TGCGCAGCACCAGCAGCGACAGTATATCAAACAGCGTCGGCGCTCCTGGC
CCTCATCACTACCCTCTTCCCCTACCCCCCCACTTCTACAACAACCACGC
CCACCAGCAGCACCAGCAGCACCAGCAGCTAAACCAACTCCCCCTTCCCC
TCCCCCCTCCTCCCCCCTCCATCCCCCCTCCCTACACCTACCGCCCCGCC
CACACCTCCGCCGAGTCGTACGCCCTCCACCTCGCCCAGCACATCCCTAC
AACCTCCTTTGTGTGCCGCCGCTGCACCAAGGGCTTCCATAACAAACAAG
CCCTCGGATGGCACACCCGCAAAGGCTGCAACGGCCACCCTGGTACTGCA
GTCACCAACCAACAGCAGCCTTCCTCCTCCCCTCTCCCCCCCCCCCTCCT
CCCCCACTTGCTCCCTACCCCCACCCGCACTACACCCATCCTCCTCCTGA
ACACTACATGTATGCACATCATCCTCCTCCCCCACATCCTCAAATGCAGT
CCATACAACATCATATGGCTGGACAGCAGCACTACCAACACTATTATTAG
AGCATAAAAGTGATCGGGGTCCAAAGAGGGAGGTAAGGAGAATGGGAAGG
AGGCGAATGTCTATTTTGTGTGTAAAAAGGGATATGCATGTTTGTTTGTT
TGCTCTTGTTTGCATATGGATGTGTGGCTTGATTCACACACGAGATCATT
CCGTTCTTTTGTTGAGCGCTGATTAGAAATATCGCGGGCTATAAAAGAGG
AAAGAAAGAAGAGAGACAGATGGAAGGGGAGAGTTGGGGAATGACAATTC
CAAATGGGGAGGCAGAATTTGAGTGATGAATAGAGAGAGGGTGAGAGAAG
AGGAAGCGAGCAGCCTTGCGCCAAACGGGAGACGAGAGTGGGAAAGCAAA
GCTGTCCCTGGCGAGGAAAGGGAGATGATGACGAGCTTCCTTTCTCAAGG
GGGAGGACATGGTCAGAAATATTGCATATGTGATTTTTCGACTATACATT
CATCTTCTCATCCAAATTAAATTTGTGAGTATGCTTCTGTAATTGTCTGC
CCCACGGTGAGAATGGAATATCAATAAGAGATGAAGGCGAGCAAGAAGGA
GGAGTAGGAGAGGTTTTACAAAAAGGAAGAGGAGGATGTCGAGATGAAAA
GAACGCACACACACGAAGATTATATATATATATATGGAAAGAGAGACTGA
TGGATTGAGGGAGGAAGGAAGGAAGGTGTAAAGAGCAGAGATGGATTGTA
GAGATAGAACTTTCAATGGGGACACAAGCAAATACATTTCGCGGTGAAGA
GAGTAGATGACCAAGTACAACAGCAAGACCGCAAGTCACAGAAGGGGAAA
CGCGCCACCAGTAGCGGGAGCACGCGGAGGGGAATTCTTTGTTTTCTATT
TCGGGGTCTAGGTTCATTGATCGTCTGTCGGGAAGAGAGAAGAAAAGTGT
GACGGGGAGGATAGAGGGAGGAAGAAGAAGAGGCCGAGGAAGAGGCAGTG
CGCAGTTTGTCAGAGCAGCCACGTAAGGGGTGGCGCCGACTCAAGCACCG
ATGGTGGTAATAATATTCATCGAAAATAAATCATCATTTTTAT
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protein sequence of NO08G02670.1

>NO08G02670.1-protein ID=NO08G02670.1-protein|Name=NO08G02670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1171bp
MSAACTPPRTQGAGLTTDTSEGVPLLGFASTEKTRAASMTTTKGPLIGFS
EAHLLQQVHGAGETTMASISRDSTRSSSMDSTASLGHKADAELMVSFLNE
IHSTGSAKSNNMNVIVEPTGPVTARPPSPSRLTREKDNTAAWEGNGESLL
LCLKTKDTSSPSTSSSSSPYDTPPSTAKDKERKSSWGDQQTMAGVRGQRS
SFGPAAFLKANSSRDWARMEEVDEAEGYREKQQQRGIDEMEEDDAKIMVA
FRQTASSSSSDSESSGGFGVSSSSSSSSSSSDDDDDDELIMSSDGYQEIH
LARQKQQQQQHHRAASSGSWSLFNCLVTEAGNGSRKLARQRERAYGCPWY
RVGYYRRCHDKYGQDASVYDSDDSEYEESAREGEVEEGGQGGPYRSDLTS
VRAMMLRKDKSADRAVAGVGGVPKYHRDWGKLKRRDVTRQQQRMRREREE
RGVGGRGAQAAGLSERAGGGDGVGGHGEREGGGYCLGKIAGTGGGWGPSP
RRSPSKKEKWGFVGSSSSNGGKATNMSSSSGSLKKSKLPAPKRQSTALTL
SFEVQPNGLIRCKRCGKPNFKNHFALRSHLSHCPGTIHMKEQRMKIEAGL
LPPETPLCLPVDEEEREQGPSNAAWVPAYNGSGSGSNLGGNVSRSASGSL
DYNAPGSSTCSNHQFKMLASSCSSSSASSGTSHGFNAFPRLQASPGQQQR
RQELKQQQQQQQQQHRLPPPTSFDKATASNSSPSSSAPEPTTTLPTYEGT
PLVPNLVQNGKSLVGRTISYHHHHKSVHDWTDVLVRKYRPRSRCHLIVHA
DGTSEWAMLTDRNTRLDPGFHPSLSSASSAASCSDEEHEDKGKGETGSSS
SSSSSSSSPRLSNPGFHMEEGLTTGASSNSVTTSGGLTCTSTPGAPFSSP
GRNAFFSEQENLLLSRRPAKRKAENSNSSSGISQAESSPSSSSSFTFVRN
DHRRQQQQQQEEEDEEEEGEEEREGEGIEQPMPKIMRSTSSDSISNSVGA
PGPHHYPLPLPPHFYNNHAHQQHQQHQQLNQLPLPLPPPPPSIPPPYTYR
PAHTSAESYALHLAQHIPTTSFVCRRCTKGFHNKQALGWHTRKGCNGHPG
TAVTNQQQPSSSPLPPPLLPHLLPTPTRTTPILLLNTTCMHIILLPHILK
CSPYNIIWLDSSTTNTIIRA*
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Synonyms
Publications