NO08G02660, NO08G02660 (gene) Nannochloropsis oceanica

Overview
NameNO08G02660
Unique NameNO08G02660
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2372
Alignment locationchr8:746715..749086 -

Link to JBrowse

Properties
Property NameValue
DescriptionPseudouridine family
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:746715..749086 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0009451RNA modification
GO:0001522pseudouridine synthesis
GO:0009451RNA modification
GO:0001522pseudouridine synthesis
Vocabulary: Molecular Function
TermDefinition
GO:0009982pseudouridine synthase activity
GO:0003723RNA binding
GO:0009982pseudouridine synthase activity
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR020103PsdUridine_synth_cat_dom
IPR002942S4_RNA-bd
IPR006145PsdUridine_synth_RsuA/RluD
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
BLAST of NO08G02660 vs. NCBI_GenBank
Match: EWM26704.1 (pseudouridine family [Nannochloropsis gaditana])

HSP 1 Score: 536.6 bits (1381), Expect = 9.900e-149
Identity = 299/517 (57.83%), Postives = 350/517 (67.70%), Query Frame = 0
Query:   34 NGFVSLPCDCGQPSMSSSAQNRKASTNLMAANQPPWKRRGREQKRDAEDELALFEQNLLNHGVVQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGATAAAGGIKEGPLQDTPIEGQAQETFLAEASDSLVRVDRFLALRLPMQSRSALGDIFDEGLVFVNGIPARKSLKLVEGDKVEIQEHTRAGMSDDIRGEDIPLTVLYEDEHLIAINKAPGMVVHPAPGNRNGTFVNALVYHVARGGGSIETTAGSEGRPGIVHRLDKGTSGVLLAAKTAKAHASLSAAFSERRVNKTYLAISIGNPSTEGAVIDVPIGRHPRDRQRMAVAMKARVPIAYLSSHGRGGVLDHAVEXXXXXXXXXXXXXXXXXXXXTYEGELLMGRGGNSGSTPLLGRTARSTVKTLAFDGRLGVVEVGIETGRTHQIRVHLQHRRNPVLGDDLYGNAQWNARAKRRWGIKRPMLHALRVEVAHPVTGVPLRLVAPVPMDMMSVVSNIWPQTKGKEEEEWXVTAEGRLS 551
            +GF+       + S+S   Q R     +MA  +PPW+RRG ++K+D+EDEL + EQ+LLN    +                                     T        G L+D      AQ  F+A  S+SL+RVDR L  RL   SRS++ D+ D G V+VNG PARKSLK+VEGD++ +++        ++  EDIPL VLYEDEH+IA+NKAPGMVVHPAPGNRNGTFVNAL+ HVAR GG IE   GSEGRPG+VHRLDKGTSGVLLAAKTA+AHA+LS+AF+ERRVNKTYLAISIGNPS++GAVIDVPIGRHPRDRQRMAVAM+AR   ++ SS         AV                     T   ELLMGRGGNSG+TPL GR ARSTVKTLAFDGRL VVEVGIETGRTHQIRVHLQHRRNPVLGD+LYGNAQWNARA+RRWG+ RPMLHALR+ V HPVTG PLRLVAPVP DM+SV   IWPQ KG+E EEW    + R S
Sbjct:   32 DGFICPRGGMQRLSLSPCPQQRTVFA-MMAGRKPPWQRRGPDKKQDSEDELWVLEQSLLNGSSPRTSAFVPSITPTSKTSSSTPEKTDN-------------TLKDTDGNFGTLRD-EANITAQFMFVANTSESLIRVDRLLTQRLKGHSRSSVCDLLDRGFVYVNGSPARKSLKIVEGDEIFVRQCATNERLAEVEEEDIPLDVLYEDEHVIAVNKAPGMVVHPAPGNRNGTFVNALLAHVARRGGEIEEVVGSEGRPGVVHRLDKGTSGVLLAAKTARAHAALSSAFAERRVNKTYLAISIGNPSSQGAVIDVPIGRHPRDRQRMAVAMQART--SHTSSFPGASYAQDAV----LNYDGCSEDDQEIGYNSTEGEELLMGRGGNSGNTPLTGRKARSTVKTLAFDGRLSVVEVGIETGRTHQIRVHLQHRRNPVLGDELYGNAQWNARARRRWGVTRPMLHALRLVVDHPVTGDPLRLVAPVPPDMLSVAHGIWPQVKGRENEEWWDMVDRRPS 527          
BLAST of NO08G02660 vs. NCBI_GenBank
Match: CBN79948.1 (Pseudouridine synthase, RluD [Ectocarpus siliculosus])

HSP 1 Score: 300.8 bits (769), Expect = 9.200e-78
Identity = 175/398 (43.97%), Postives = 226/398 (56.78%), Query Frame = 0
Query:  158 ETFLAEASDSLVRVDRFLALRLPMQSRSALGDIFDEGLVFVNGIPARKSLKLVEGDKVEIQEHTRAGMSDDIRGEDIPLTVLYEDEHLIAINKAPGMVVHPAPGNRNGTFVNALVYHVARGGGSIETTAGSEG--------------RPGIVHRLDKGTSGVLLAAKTAKAHASLSAAFSERRVNKTYLAISIGNPSTEGAVIDVPIGRHPRDRQRMAVAMKARVPIAYLSSHGRGGVLDHAVEXXXXXXXXXXXXXXXXXXXXTYEGELLMGRGGNSGSTPLLGRTARSTVKTLAFDGRLGVVEVGIETGRTHQIRVHLQHRRNPVLGDDLYGNAQWNARAKRRWGIKRPMLHALRVEVAHPVTGVPLRLVAPVPMDMMSVVSNIWPQTKGKEEEEW 542
            E    E  +   R+D FL  R+P QSRS  G +   G+V V G  A+KS+K+ EG +VE++      +S  ++GEDIPL +LYED+ +IA++K  GMVVHPAPG+ NGTFVNALV+H+ + G        +E               RPGIVHRLDKGT+GVLLAAK     A L+  F++RR++K+YLA+ +GNP  + A IDVPIGRHPRDRQRM VA+    P                                                        +  R A S V T+AFDG+L V EV IETGRTHQIRVHLQHRR PVLGD++YGN  WN R ++  G+ RP+LHA  +E  HP TG  + L AP+P D+ +VV  I+PQ +  E  EW
Sbjct:  104 EMLTVEEGEGGKRLDSFLGARMPEQSRSYFGGLCQLGMVLVGGKTAKKSVKVEEGQEVEVRFIISPELS--LQGEDIPLDILYEDDEIIAVSKPAGMVVHPAPGSWNGTFVNALVFHLEKSGADGNGLGVAEAAFQSVPDGEHNPSLRPGIVHRLDKGTTGVLLAAKNPTMQAKLAELFAQRRISKSYLAVCVGNPG-KAATIDVPIGRHPRDRQRM-VAVPTIQP-------------------------------------------------------NIRSRRALSVVTTVAFDGKLSVAEVSIETGRTHQIRVHLQHRRTPVLGDEVYGNNDWNRRLRQSTGLTRPLLHARSLEFKHPNTGEVVSLAAPLPSDVEAVVRRIYPQVE-DEHPEW 441          
BLAST of NO08G02660 vs. NCBI_GenBank
Match: CEM05541.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 250.4 bits (638), Expect = 1.400e-62
Identity = 172/484 (35.54%), Postives = 232/484 (47.93%), Query Frame = 0
Query:  146 PLQDTPIEGQAQETFLAEASDSLVRVDRFLALRLPMQSRSALGDIFDEGLVFVNGIPARKSLKLVEGDKVEIQ-----EHTRAGMSDD---IRGEDIPLTVLYEDEHLIAINKAPGMVVHPAPGNRNGTFVNALVYHVARGGGSIETTAGS-----------EGRPGIVHRLDKGTSGVLLAAKTAKAHASLSAAFSERRVNKTYLAISIGNPSTEGAVIDVPIGRHPRDRQRMAVAM--KARVPIAYLSSHGRGGVLDHAVEXXXXXXXXXXXXXXXXXXXXTYEGELLMGRGGNSGSTPLLGRTARSTVKTLAFDGRLGVVEVGIETGRTHQIRVHLQHRRNPVLGDDLYGNAQWN---ARAKRRWGIKR------------------------------------------------------------------PMLHALRVEVAHPVTGVPLRLVAPVPMDMMSVVSNIWPQTKGKEEE 540
            P +   +  +   T   EASD+ VR+DRFL+   P  SRS LG +  +  VFV+G PARKS K+ EG  V ++     E +   +  D   +  E IPL++LYED+ L+ INK   ++VHPAPG+ NGT +NAL++H       +  +A S             RPG+VHRLDKG++GVL+ AKT +A A LS  F++R VNKTY+A+S+GNP T+   IDVPI RHP  R +M        R P++  SS                                      ++G+     +   + R A S V+T+A DGRL VVEV I TGRTHQIRVHLQH   PVLGD+ YGNA WN   ARA  R  +KR                                                                  P+LHA R+E+ HP++G  +R  AP+P D+  V   I P+  G+  E
Sbjct:  107 PDESRDLSAEQVHTLAVEASDAGVRLDRFLSDHFPRFSRSYLGQLCQDQKVFVDGRPARKSAKVEEGQTVTVELGGTTEPSSNELLPDEWTLTAEPIPLSILYEDDSLVVINKQADLIVHPAPGSWNGTVINALMHHFHLSLPPLFESAESAVIDSAELLPLRFRPGVVHRLDKGSTGVLVVAKTKQAQAHLSQQFADRLVNKTYVAVSVGNPGTQS--IDVPIARHPTQRHKMTAVRDPSLREPVSKSSS-----------------------------------PVTIVGQSPRVEALLRVARPAESEVRTIATDGRLSVVEVDIRTGRTHQIRVHLQHIGCPVLGDETYGNADWNRRLARALDRQNLKRRGKRGQRAGTIGGIFDEQDGPRTFFGVDDIPPHLRDDGGEAEAVGDETAEADGSEVSPSSGEWHVHPLLHAQRLELTHPMSGEAMRFEAPLPDDLRWVAGKISPRLAGQTSE 553          
BLAST of NO08G02660 vs. NCBI_GenBank
Match: XP_002184218.1 (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >EEC44396.1 predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 248.8 bits (634), Expect = 4.100e-62
Identity = 156/371 (42.05%), Postives = 204/371 (54.99%), Query Frame = 0
Query:  170 RVDRFLALRLPMQSRSALGDIFDEGLVFV------NGIPARKSLKLVEGDKVEIQEHTRAGMSDDIRGEDIPLTVLYEDEHLIAINKAPGMVVHPAPGNRNGTFVNALVYHVARGGGSIETTAGSEGRPGIVHRLDKGTSGVLLAAKTAKAHASLSAAFSERRVNKTYLAISIGNPSTEGAVIDVPIGRHPRDRQRMAVAMKARVPIAYLSSHGRGGVLDHAVEXXXXXXXXXXXXXXXXXXXXTYEGELLMGRGGNSGSTPLLGRTARSTVKTLAFDGRLGVVEVGIETGRTHQIRVHLQHRRNPVLGDDLYGNAQWNARAKRRWGIKRPMLHALRVEVAHPVTGVPLRLVAPVPMDMMSVVSNIWPQTK 535
            R+D  LA   P  SRS  G++     V +      N +  RKS K+  G ++ I      G S +I  +D+PL +++EDEH+I INKA  MVVHPA GN +GT VNAL Y++A    SI        RPGIVHRLDKGT+GVL+ AKT++  A+LS  F+ R+V KTY+AI++GNP  +  VID PIGRHP  RQRM V     VP  +                                                  ST   GR A S V TLAFDG+L +V+V IETGRTHQIRVHLQ R  P+ GDD+YG A WN +  +   I RP+LHA ++E+ HPVTG P+   A +  DM  + + I+P ++
Sbjct:    2 RIDAVLAALEPEMSRSFCGNLVANKRVSIIQENGDNCLVDRKSFKVEPGQQLIISLPREEGAS-EIIAQDLPLDIIFEDEHMIVINKAANMVVHPAAGNWDGTVVNALAYYLANRSESISF------RPGIVHRLDKGTTGVLVVAKTSQTLATLSNFFAARQVKKTYMAITVGNPG-KHVVIDKPIGRHPLHRQRMRV-----VPDPH-----------------------------------------------QKNST---GRRALSYVDTLAFDGKLSLVQVRIETGRTHQIRVHLQDRHTPIYGDDIYGLADWNKKLSKTHRIVRPLLHAYKLEINHPVTGEPMVFKASLADDMKRITTTIYPDSE 309          
BLAST of NO08G02660 vs. NCBI_GenBank
Match: GAX29216.1 (23S rRNA pseudouridine1911/1915/1917 synthase [Fistulifera solaris])

HSP 1 Score: 246.9 bits (629), Expect = 1.600e-61
Identity = 161/392 (41.07%), Postives = 209/392 (53.32%), Query Frame = 0
Query:  170 RVDRFLALRLPMQSRSALGDIFDEGLV---FVNGIPARKSLKLVEGD--KVEIQEHTRAGMSDDIRGEDIPLTVLYEDEHLIAINKAPGMVVHPAPGNRNGTFVNALVYHVARG---------GGSIETTAGSEG------RPGIVHRLDKGTSGVLLAAKTAKAHASLSAAFSERRVNKTYLAISIGNPSTEGAVIDVPIGRHPRDRQRMAVAMKARVPIAYLSSHGRGGVLDHAVEXXXXXXXXXXXXXXXXXXXXTYEGELLMGRGGNSGSTPLLGRTARSTVKTLAFDGRLGVVEVGIETGRTHQIRVHLQHRRNPVLGDDLYGNAQWNARAKRRWGIK-RPMLHALRVEVAHPVTGVPLRLVAPVPMDMMSVVSNIWPQTKGKEEEE 541
            R+D  LA  L  +SRS  G +  EG V     + +  +KS K+ EG   ++++ +      +D +  E+IPL +LYEDEH+I +NKA GMVVHPA GN  GT VNALVY++             GS+   + +E       RPGIVHRLDKGT+GVL+ AK + A  SLS AF+ R+V KTYLAI++GNP  +   ID PI RHP  RQRM V     VP  +          D  ++                                 S S    GR A S V TLAFDG+L VV+V I TGRTHQIRVHLQ R  P+ GDD+YG   WN R  +   I+ RP+LHA ++++ HPVTG  +   AP+  DM  V   I P+    E  E
Sbjct:  124 RIDAALAACLANESRSVCGSLVTEGCVQDGVTHEVLNKKSYKVQEGQTLRIDLSQRENKVPTDILVPENIPLDILYEDEHMIVLNKAAGMVVHPAAGNWRGTVVNALVYYLPNSPYGSGEFVTNGSMAANSNNEDGEPVLFRPGIVHRLDKGTTGVLVVAKNSHALTSLSEAFANRQVQKTYLAITVGNPGKQ-VTIDKPIARHPIHRQRMRV-----VPDPHQRDSSGMAPKDRLLQP-------------------------------QSSS----GRRALSFVDTLAFDGQLSVVQVQIATGRTHQIRVHLQDRHTPIYGDDVYGLKDWNDRLFKTQQIRDRPLLHAYKLQIEHPVTGQVMEFRAPLAEDMFRVAKTICPRGDEFEHSE 474          
BLAST of NO08G02660 vs. NCBI_GenBank
Match: GAX25575.1 (23S rRNA pseudouridine1911/1915/1917 synthase [Fistulifera solaris])

HSP 1 Score: 245.0 bits (624), Expect = 6.000e-61
Identity = 159/394 (40.36%), Postives = 208/394 (52.79%), Query Frame = 0
Query:  170 RVDRFLALRLPMQSRSALGDIFDEGLV---FVNGIPARKSLKLVEGD--KVEIQEHTRAGMSDDIRGEDIPLTVLYEDEHLIAINKAPGMVVHPAPGNRNGTFVNALVYH-----------VARGGGSIETTAGSEG------RPGIVHRLDKGTSGVLLAAKTAKAHASLSAAFSERRVNKTYLAISIGNPSTEGAVIDVPIGRHPRDRQRMAVAMKARVPIAYLSSHGRGGVLDHAVEXXXXXXXXXXXXXXXXXXXXTYEGELLMGRGGNSGSTPLLGRTARSTVKTLAFDGRLGVVEVGIETGRTHQIRVHLQHRRNPVLGDDLYGNAQWNARAKRRWGIK-RPMLHALRVEVAHPVTGVPLRLVAPVPMDMMSVVSNIWPQTKGKEEEE 541
            R+D  LA  L  +SRSA G +  EG V     + +  +KS K+ EG   ++ + +      +D +  E+IPL +LYEDEH+I +NKA GMVVHPA GN  GT VNAL Y+           +A G  + + +  +E       RPGIVHRLDKGT+GVL+ AK + A  SLS AF+ R+V KTYLAI++GNP  +   ID PI RHP  RQRM V     VP  +          D  ++                                        GR A S V TLAFDG+L VV+V I TGRTHQIRVHLQ R  P+ GDD+YG   WN R  +   I+ RP+LHA ++++ HPVTG  +   AP+  DM+ V   I P+    E  E
Sbjct:  123 RIDAALAACLVNESRSACGSLVTEGCVQDGVTHEVLNKKSYKVQEGQTLRINLSQRDAKVPTDILVPENIPLDILYEDEHMIVLNKAAGMVVHPAAGNWRGTVVNALAYYLPTSPYGSGEFIANGSMTAKNSNNNEDGEPVLFRPGIVHRLDKGTTGVLVVAKNSHALTSLSEAFANRQVQKTYLAITVGNPGKQ-VTIDKPIARHPIHRQRMRV-----VPDPHQRDSSGMAPKDRLLQQSLSS-----------------------------------GRRALSFVDTLAFDGQLSVVQVRIATGRTHQIRVHLQDRHTPIYGDDVYGLKDWNDRLFKTQQIRDRPLLHAYKLQIEHPVTGHVMEFRAPLAEDMLRVAKTICPRGDDFEHSE 475          
BLAST of NO08G02660 vs. NCBI_GenBank
Match: SCA62605.1 (Uncharacterized RNA pseudouridine synthase Cpar_0723 [Chlamydiales bacterium SCGC AG-110-P3])

HSP 1 Score: 229.6 bits (584), Expect = 2.600e-56
Identity = 147/372 (39.52%), Postives = 198/372 (53.23%), Query Frame = 0
Query:  159 TFLAEASDSLVRVDRFLALRLP-MQSRSALGDIFDEGLVFVNGIPARKSLKLVEGDKVEIQEHTRAGMSDDIRGEDIPLTVLYEDEHLIAINKAPGMVVHPAPGNRNGTFVNALVYHVARGGGSIETTAGSEGRPGIVHRLDKGTSGVLLAAKTAKAHASLSAAFSERRVNKTYLAISIGNPSTEGAVIDVPIGRHPRDRQRMAVAMKARVPIAYLSSHGRGGVLDHAVEXXXXXXXXXXXXXXXXXXXXTYEGELLMGRGGNSGSTPLLGRTARSTVKTLAFDGRLGVVEVGIETGRTHQIRVHLQHRRNPVLGDDLYGNAQWNARAKRRWGIKRPMLHALRVEVAHPVTGVPLRLVAPVPMDMMSVVSNI 530
            TF+   S++  R+D+ L+ R    QSRS    +    LV +NG P +K ++   GD+VE++      +  ++  E++PL VLYED+HLI INK+ GMVVHPAPGN  GTFVNAL+YH    G S +  A    RPGIVHRLDK TSG L+AAK       L   FS R++ K Y+A+ +GNP      +DVPIGRHP  R++MAV          + S GR     HAV                                              +   TLA   RL VV++ +ETGRTHQIRVHL+HR  P+LGD +YG    N    R++   R MLHA R+   HP+TG  L ++AP+P+DM   ++ +
Sbjct:   23 TFVVSDSEAGSRLDKLLSQRYQGQQSRSYFQKLIRNELVLLNGRPVKKQVRPESGDEVEVEFALTPEV--NLHPENLPLEVLYEDDHLIIINKSAGMVVHPAPGNWTGTFVNALLYHC---GDSFQAEASL--RPGIVHRLDKNTSGCLVAAKNLHVQQRLVELFSLRKIYKEYIAVCVGNPG--DGTVDVPIGRHPVHRKQMAV----------IESGGR-----HAV----------------------------------------------THYSTLAHKDRLSVVKLVLETGRTHQIRVHLRHRGMPILGDCVYGTEAMN----RQYSASRQMLHAYRLRFMHPITGEKLDVMAPIPVDMRLQIARV 320          
BLAST of NO08G02660 vs. NCBI_GenBank
Match: WP_088205723.1 (RluA family pseudouridine synthase [Chlamydiales bacterium SCGC AG-110-P3])

HSP 1 Score: 229.6 bits (584), Expect = 2.600e-56
Identity = 147/372 (39.52%), Postives = 198/372 (53.23%), Query Frame = 0
Query:  159 TFLAEASDSLVRVDRFLALRLP-MQSRSALGDIFDEGLVFVNGIPARKSLKLVEGDKVEIQEHTRAGMSDDIRGEDIPLTVLYEDEHLIAINKAPGMVVHPAPGNRNGTFVNALVYHVARGGGSIETTAGSEGRPGIVHRLDKGTSGVLLAAKTAKAHASLSAAFSERRVNKTYLAISIGNPSTEGAVIDVPIGRHPRDRQRMAVAMKARVPIAYLSSHGRGGVLDHAVEXXXXXXXXXXXXXXXXXXXXTYEGELLMGRGGNSGSTPLLGRTARSTVKTLAFDGRLGVVEVGIETGRTHQIRVHLQHRRNPVLGDDLYGNAQWNARAKRRWGIKRPMLHALRVEVAHPVTGVPLRLVAPVPMDMMSVVSNI 530
            TF+   S++  R+D+ L+ R    QSRS    +    LV +NG P +K ++   GD+VE++      +  ++  E++PL VLYED+HLI INK+ GMVVHPAPGN  GTFVNAL+YH    G S +  A    RPGIVHRLDK TSG L+AAK       L   FS R++ K Y+A+ +GNP      +DVPIGRHP  R++MAV          + S GR     HAV                                              +   TLA   RL VV++ +ETGRTHQIRVHL+HR  P+LGD +YG    N    R++   R MLHA R+   HP+TG  L ++AP+P+DM   ++ +
Sbjct:    8 TFVVSDSEAGSRLDKLLSQRYQGQQSRSYFQKLIRNELVLLNGRPVKKQVRPESGDEVEVEFALTPEV--NLHPENLPLEVLYEDDHLIIINKSAGMVVHPAPGNWTGTFVNALLYHC---GDSFQAEASL--RPGIVHRLDKNTSGCLVAAKNLHVQQRLVELFSLRKIYKEYIAVCVGNPG--DGTVDVPIGRHPVHRKQMAV----------IESGGR-----HAV----------------------------------------------THYSTLAHKDRLSVVKLVLETGRTHQIRVHLRHRGMPILGDCVYGTEAMN----RQYSASRQMLHAYRLRFMHPITGEKLDVMAPIPVDMRLQIARV 305          
BLAST of NO08G02660 vs. NCBI_GenBank
Match: OEU13219.1 (pseudouridine synthase [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 225.7 bits (574), Expect = 3.800e-55
Identity = 148/373 (39.68%), Postives = 202/373 (54.16%), Query Frame = 0
Query:  170 RVDRFL-ALRLPMQSRSALGDIFDEGLVFV----------NGIPARKSLKLVEGDKVEIQEHTRAGMSDDIRGEDIPLTVLYEDEHLIAINKAPGMVVHPAPGNRNGTFVNALVYHVARGGGSIETTAGSEGRPGIVHRLDKGTSGVLLAAKTAKAHASLSAAFSERRVNKTYLAISIGNPSTEGAVIDVPIGRHPRDRQRMAVAMKARVPIAYLSSHGRGGVLDHAVEXXXXXXXXXXXXXXXXXXXXTYEGELLMGRGGNSGSTPLLGRTARSTVKTLAFDGRLGVVEVGIETGRTHQIRVHLQHRRNPVLGDDLYGNAQWNARAKRRWGIKRPMLHALRVEVAHPVTGVPLRLVAPVPMDMMSVVSNIWP 532
            R+D  L AL  P  SRSA G++     V+             +  RKS+K+  G  + +    +  +  +I  ++IPL +LYEDE++I INK  GMVVHPA GN  GT VNAL Y++A           ++   GIVHRLDKGT+G+L+ +KT +A A+LSAAF+ R+V KTYLAI++GNP  +  VID PIGRHP  RQRM V     VP  +                                            R  +SG TP      R  +K +    ++ + +V IETGRTHQIRVHLQ R  PV GDD+YG A WN R  +  GI+RP+LHA  +E+ HP+TG  +  VAP+  DM+++  ++WP
Sbjct:  123 RIDAVLAALMDPPMSRSASGNLVTNECVYQIVTTKEGSQDTVLIDRKSIKVDAGATLRV-VLPKNEIPTEIIPQNIPLKILYEDEYMIVINKDAGMVVHPAAGNWEGTVVNALAYYLA-----------NDSPYGIVHRLDKGTTGILVVSKTDEALANLSAAFAARKVKKTYLAITVGNPG-KHVVIDKPIGRHPLHRQRMRV-----VPDPH--------------------------------------------RKNSSGVTP----RERIRIKKM----QMTLAKVRIETGRTHQIRVHLQDRHTPVYGDDVYGIADWNKRLLKNHGIQRPLLHAHTLEIEHPITGEHMVFVAPMAADMITIAESVWP 425          
BLAST of NO08G02660 vs. NCBI_GenBank
Match: WP_098037656.1 (RluA family pseudouridine synthase [Estrella lausannensis] >CRX37800.1 RNA pseudouridine synthase [Estrella lausannensis])

HSP 1 Score: 224.2 bits (570), Expect = 1.100e-54
Identity = 148/373 (39.68%), Postives = 199/373 (53.35%), Query Frame = 0
Query:  151 PIEGQAQETFLAEASDSLVRVDRFLALRL-PMQSRSALGDIFDEGLVFVNGIPARKSLKLVEGDKVEIQEHTRAGMSDDIRGEDIPLTVLYEDEHLIAINKAPGMVVHPAPGNRNGTFVNALVYHVARGGGSIETTAGSEGRPGIVHRLDKGTSGVLLAAKTAKAHASLSAAFSERRVNKTYLAISIGNPSTEGAVIDVPIGRHPRDRQRMAVAMKARVPIAYLSSHGRGGVLDHAVEXXXXXXXXXXXXXXXXXXXXTYEGELLMGRGGNSGSTPLLGRTARSTVKTLAFDGRLGVVEVGIETGRTHQIRVHLQHRRNPVLGDDLYGNAQWNARAKRRWGIKRPMLHALRVEVAHPVTGVPLRLVAPVPMDM 523
            P  G+  E  L   S++  R+D+ LA R   ++SR+    +F EG V VNG+P +K  +   GD VE+Q      +  ++  E+IPL +LYEDE LIAI+K PGMVVHPAPGN +GT VNAL++H  R     E       RPGIVHRLDK TSGVLLAAK+   H  L   FS R+V K YLA+ +GNP     +ID PIGR P  R++M                    VLD                          EG                G+ A +  +TLA DG++ +V++ ++TGRTHQIRVH+Q +  PVLGD LYG+   N    ++W  +R +LHA R+   HP+T  P+   AP+P D+
Sbjct:    4 PEFGEELEEVLIAESEAGERLDKILAGRFKDVKSRTYFQYLFQEGKVSVNGLPVKKQYRPRTGDLVEVQFILTPEL--NLAAENIPLRILYEDESLIAIDKPPGMVVHPAPGNWSGTVVNALLFHCTR---LKEEFQQEHIRPGIVHRLDKETSGVLLAAKSHSMHGKLVDLFSSRQVYKEYLAVCLGNPGR--GIIDKPIGRDPYHRKQMK-------------------VLD--------------------------EG----------------GKRAVTEFETLATDGQVSLVKIILKTGRTHQIRVHMQSKNAPVLGDSLYGSIAVN----KKWKAERQLLHAYRLSFLHPMTKKPITFQAPLPPDL 304          
The following BLAST results are available for this feature:
BLAST of NO08G02660 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM26704.19.900e-14957.83pseudouridine family [Nannochloropsis gaditana][more]
CBN79948.19.200e-7843.97Pseudouridine synthase, RluD [Ectocarpus siliculos... [more]
CEM05541.11.400e-6235.54unnamed protein product [Vitrella brassicaformis C... [more]
XP_002184218.14.100e-6242.05predicted protein, partial [Phaeodactylum tricornu... [more]
GAX29216.11.600e-6141.0723S rRNA pseudouridine1911/1915/1917 synthase [Fis... [more]
GAX25575.16.000e-6140.3623S rRNA pseudouridine1911/1915/1917 synthase [Fis... [more]
SCA62605.12.600e-5639.52Uncharacterized RNA pseudouridine synthase Cpar_07... [more]
WP_088205723.12.600e-5639.52RluA family pseudouridine synthase [Chlamydiales b... [more]
OEU13219.13.800e-5539.68pseudouridine synthase [Fragilariopsis cylindrus C... [more]
WP_098037656.11.100e-5439.68RluA family pseudouridine synthase [Estrella lausa... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008771NSK008771Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G02660.1NO08G02660.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|525648gene_3595Nannochloropsis oceanica (N. oceanica CCMP1779)gene
RluDgene3801Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G02660.1NO08G02660.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G02660 ID=NO08G02660|Name=NO08G02660|organism=Nannochloropsis oceanica|type=gene|length=2372bp
CCTCACCCCTTATTCATTCCTTTCTTGGGCCACCAATCGTAGCCTCTGGA
CCATTGCTTGAAGCGAGTTGTGACCAGTTTGCAGGTTTTGCATGCTGGCT
TATGTGACGGGTACAACATCAAAGGACGGACGAGGGACAAAATTGGTCGA
CCGTTGGGACGTCGAGGCAACGGCCTCTGTGAGAGGAACTTCCTTGAAGC
AAACGCATCTTCCTCCTTTTTGCTATGCAAGATAGTGCGCCTATTTTTTT
CGTTGTCACACATCAATAAACCAACAATGACAAGAGAACTTGGATCAGTT
TGAACCCACCCCTTCCTTCTCTCCACCACCACAACCACAAGCTCTAGCAA
GAAAACACCAACAACAGGCCCCCCGCCATCAACATCAACCAGCCGCAGCA
TCATCACCAGCAGCAGCAGCAGCGCTTGCGCTCATTCATCACATTTCGTA
GCTGCAGCTGTCCTCACCCCACTTGCCCGTCATGGCAAACGAGGGCATGC
GTAATACAAGAAGAAGAAGGGCAAGGCCTCAGCAGCTGCGCGCGGTGGTG
GTGGCAGCATTCAGCCTAGTATCCGTCGTCAATGGCTTTGTCTCCCTCCC
CTGCGACTGCGGGCAGCCCTCCATGTCGTCTTCCGCGCAAAACCGCAAGG
CAAGCACCAACCTGATGGCGGCTAATCAACCACCCTGGAAACGACGTGGA
CGGGAGCAAAAGCGGGACGCCGAAGACGAGCTAGCTCTATTCGAGCAAAA
TCTGTTGAACCACGGCGTCGTCCAACCAGGCCCGGCCTCCCCTGCCCCCC
AAAAGCCGAAGCCCTCCAAGTCCCTGAAGACCATAAAATCCTCCCAATCC
TCTCCAGTACCACGCCCACCACAAGCTGCGGGGGCAACAGCAGCAGCAGG
AGGAATCAAAGAGGGACCTCTGCAAGACACTCCAATCGAGGGACAGGCCC
AAGAGACCTTCCTCGCGGAGGCTTCCGATTCACTGGTACGTGTCGATCGC
TTCCTGGCCCTGCGACTGCCTATGCAAAGTCGAAGCGCTCTGGGAGATAT
TTTCGACGAAGGTTTGGTTTTTGTCAATGGCATCCCTGCCCGGAAGAGCC
TAAAGCTTGTAGAGGGCGATAAGGTCGAAATTCAGGAGCACACACGTGCA
GGCATGTCAGACGACATCCGAGGAGAAGACATCCCTCTGACGGTTCTTTA
CGAAGACGAACACCTCATTGCAATAAATAAGGCTCCTGGTATGGTCGTGC
ATCCTGCCCCTGGTAACCGAAATGGGACGTTTGTCAACGCCCTCGTTTAC
CACGTCGCCCGCGGGGGGGGCAGCATCGAAACAACCGCCGGAAGCGAGGG
TCGTCCTGGTATAGTCCACCGTCTCGATAAAGGCACAAGTGGAGTCCTTC
TCGCCGCTAAAACAGCTAAAGCGCATGCTTCGTTGTCTGCTGCCTTTTCT
GAGCGGCGCGTGAATAAGACCTATTTGGCTATCAGCATTGGGAATCCTTC
TACGGAAGGAGCGGTGATTGACGTCCCAATTGGTCGCCATCCGCGGGATA
GACAGCGAATGGCTGTGGCGATGAAGGCAAGGGTGCCGATAGCTTATCTC
TCCTCGCATGGGAGAGGAGGCGTCTTGGACCATGCGGTGGAAGAAGAGGA
GGAGGAGGAGGAGGGGGAAGGAGGAGGGGATTTTGATTATGAAGGAGAGT
CGACGTATGAAGGAGAATTGCTCATGGGTCGGGGGGGTAACTCGGGAAGT
ACACCATTGTTGGGACGGACGGCAAGGAGCACGGTCAAGACGTTGGCATT
TGATGGGCGGTTGGGAGTGGTGGAGGTGGGGATTGAGACGGGGCGCACGC
ACCAGATCCGCGTGCATTTGCAACATCGACGGAATCCGGTGTTGGGGGAT
GACTTGTATGGAAATGCCCAGTGGAATGCGCGGGCGAAACGACGGTGGGG
AATAAAGAGACCGATGTTGCATGCGTTGAGAGTGGAGGTGGCGCATCCTG
TGACGGGCGTGCCGCTGCGGTTGGTTGCGCCGGTGCCCATGGACATGATG
AGTGTGGTGTCCAATATATGGCCGCAGACCAAAGGCAAGGAGGAGGAGGA
GTGGTGGGTGACAGCAGAGGGCCGGTTGAGTGAGAGGTGGGAGGAGGGGA
AGGAGGAAGAGGAGGAGGAGGAGGAGCTGGCACTGAGAGAGGAGAAAGAA
CGCGTAGCGCGCTTGATTCGAGAAGGGAAGATCGACAAATTCGGGTGGGA
GCTTGAGGGATGATAATTTCAAAGAGTAGAGGTCCGAAGTTAGATTATTG
GCCACTGTATAAGACAGAAAAGCACAATGTCACACAAATTGCATGAGACA
AGCACCTGATTGGTCCCATCTT
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protein sequence of NO08G02660.1

>NO08G02660.1-protein ID=NO08G02660.1-protein|Name=NO08G02660.1|organism=Nannochloropsis oceanica|type=polypeptide|length=594bp
MANEGMRNTRRRRARPQQLRAVVVAAFSLVSVVNGFVSLPCDCGQPSMSS
SAQNRKASTNLMAANQPPWKRRGREQKRDAEDELALFEQNLLNHGVVQPG
PASPAPQKPKPSKSLKTIKSSQSSPVPRPPQAAGATAAAGGIKEGPLQDT
PIEGQAQETFLAEASDSLVRVDRFLALRLPMQSRSALGDIFDEGLVFVNG
IPARKSLKLVEGDKVEIQEHTRAGMSDDIRGEDIPLTVLYEDEHLIAINK
APGMVVHPAPGNRNGTFVNALVYHVARGGGSIETTAGSEGRPGIVHRLDK
GTSGVLLAAKTAKAHASLSAAFSERRVNKTYLAISIGNPSTEGAVIDVPI
GRHPRDRQRMAVAMKARVPIAYLSSHGRGGVLDHAVEEEEEEEEGEGGGD
FDYEGESTYEGELLMGRGGNSGSTPLLGRTARSTVKTLAFDGRLGVVEVG
IETGRTHQIRVHLQHRRNPVLGDDLYGNAQWNARAKRRWGIKRPMLHALR
VEVAHPVTGVPLRLVAPVPMDMMSVVSNIWPQTKGKEEEEWWVTAEGRLS
ERWEEGKEEEEEEEELALREEKERVARLIREGKIDKFGWELEG*
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Synonyms
Publications