NO08G02660.1, NO08G02660.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO08G02660.1
Unique Name	NO08G02660.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2372
Alignment location	chr8:746715..749086 -

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr8	genome	chr8:746715..749086 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO08G02660.1 vs.
Match: EWM26704.1 (pseudouridine family [Nannochloropsis gaditana])

HSP 1 Score: 548.9 bits (1413), Expect = 1.900e-152
Identity = 325/569 (57.12%), Postives = 396/569 (69.60%), Query Frame = 0

Query:   34 NGFVSLPCDCGQPSMSSSAQNRKASTNLMAANQPPWKRRGREQKRDAEDELALFEQNLLNHGVVQPGPASPAPQKPKPSKSLKTIKSSQSSPVPRPPQAAGATAAAGGIKEGPLQDTPIEGQAQETFLAEASDSLVRVDRFLALRLPMQSRSALGDIFDEGLVFVNGIPARKSLKLVEGDKVEIQEHTRAGMSDDIRGEDIPLTVLYEDEHLIAINKAPGMVVHPAPGNRNGTFVNALVYHVARGGGSIETTAGSEGRPGIVHRLDKGTSGVLLAAKTAKAHASLSAAFSERRVNKTYLAISIGNPSTEGAVIDVPIGRHPRDRQRMAVAMKARVPIAYL---SSHGRGGVLDHAVEEEEEEEEGEGGGDFDYEGESTYEGELLMGRGGNSGSTPLLGRTARSTVKTLAFDGRLGVVEVGIETGRTHQIRVHLQHRRNPVLGDDLYGNAQWNARAKRRWGIKRPMLHALRVEVAHPVTGVPLRLVAPVPMDMMSVVSNIWPQTKGKEEEEWWVTAEGRLS---ERWEEGKE--EEEEEEELALREEK--ERVARLIREGKIDKFGWELE 593
            +GF+       + S+S   Q R     +MA  +PPW+RRG ++K+D+EDEL + EQ+LLN        +SP      PS +  T K+S S+     P+    T        G L+D      AQ  F+A  S+SL+RVDR L  RL   SRS++ D+ D G V+VNG PARKSLK+VEGD++ +++        ++  EDIPL VLYEDEH+IA+NKAPGMVVHPAPGNRNGTFVNAL+ HVAR GG IE   GSEGRPG+VHRLDKGTSGVLLAAKTA+AHA+LS+AF+ERRVNKTYLAISIGNPS++GAVIDVPIGRHPRDRQRMAVAM+AR         +S+ +  VL++    E+++E G           ST   ELLMGRGGNSG+TPL GR ARSTVKTLAFDGRL VVEVGIETGRTHQIRVHLQHRRNPVLGD+LYGNAQWNARA+RRWG+ RPMLHALR+ V HPVTG PLRLVAPVP DM+SV   IWPQ KG+E EEWW   + R S   E   +GK+  E ++  E  + + K  ERV        +D+F WE++
Sbjct:   32 DGFICPRGGMQRLSLSPCPQQRTVFA-MMAGRKPPWQRRGPDKKQDSEDELWVLEQSLLN-------GSSPRTSAFVPSIT-PTSKTSSST-----PEKTDNTLKDTDGNFGTLRD-EANITAQFMFVANTSESLIRVDRLLTQRLKGHSRSSVCDLLDRGFVYVNGSPARKSLKIVEGDEIFVRQCATNERLAEVEEEDIPLDVLYEDEHVIAVNKAPGMVVHPAPGNRNGTFVNALLAHVARRGGEIEEVVGSEGRPGVVHRLDKGTSGVLLAAKTARAHAALSSAFAERRVNKTYLAISIGNPSSQGAVIDVPIGRHPRDRQRMAVAMQARTSHTSSFPGASYAQDAVLNYDGCSEDDQEIGY---------NSTEGEELLMGRGGNSGNTPLTGRKARSTVKTLAFDGRLSVVEVGIETGRTHQIRVHLQHRRNPVLGDELYGNAQWNARARRRWGVTRPMLHALRLVVDHPVTGDPLRLVAPVPPDMLSVAHGIWPQVKGRENEEWWDMVDRRPSAGDESMTDGKDLIESQQGWEEVVHDPKAGERV--------VDEFDWEID 568

The following BLAST results are available for this feature:

BLAST of NO08G02660.1 vs.

BLAST of NO08G02660.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM26704.1	1.900e-152	57.12	pseudouridine family [Nannochloropsis gaditana]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO08G02660	NO08G02660	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO08G02660.1	NO08G02660.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO08G02660.1.cds1	NO08G02660.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr8:746715..749086-
coding sequence from alignment at chr8:746715..749086-

mRNA sequence

>NO08G02660.1 ID=NO08G02660.1|Name=NO08G02660.1|organism=Nannochloropsis oceanica|type=mRNA|length=2372bp
CCTCACCCCTTATTCATTCCTTTCTTGGGCCACCAATCGTAGCCTCTGGA
CCATTGCTTGAAGCGAGTTGTGACCAGTTTGCAGGTTTTGCATGCTGGCT
TATGTGACGGGTACAACATCAAAGGACGGACGAGGGACAAAATTGGTCGA
CCGTTGGGACGTCGAGGCAACGGCCTCTGTGAGAGGAACTTCCTTGAAGC
AAACGCATCTTCCTCCTTTTTGCTATGCAAGATAGTGCGCCTATTTTTTT
CGTTGTCACACATCAATAAACCAACAATGACAAGAGAACTTGGATCAGTT
TGAACCCACCCCTTCCTTCTCTCCACCACCACAACCACAAGCTCTAGCAA
GAAAACACCAACAACAGGCCCCCCGCCATCAACATCAACCAGCCGCAGCA
TCATCACCAGCAGCAGCAGCAGCGCTTGCGCTCATTCATCACATTTCGTA
GCTGCAGCTGTCCTCACCCCACTTGCCCGTCATGGCAAACGAGGGCATGC
GTAATACAAGAAGAAGAAGGGCAAGGCCTCAGCAGCTGCGCGCGGTGGTG
GTGGCAGCATTCAGCCTAGTATCCGTCGTCAATGGCTTTGTCTCCCTCCC
CTGCGACTGCGGGCAGCCCTCCATGTCGTCTTCCGCGCAAAACCGCAAGG
CAAGCACCAACCTGATGGCGGCTAATCAACCACCCTGGAAACGACGTGGA
CGGGAGCAAAAGCGGGACGCCGAAGACGAGCTAGCTCTATTCGAGCAAAA
TCTGTTGAACCACGGCGTCGTCCAACCAGGCCCGGCCTCCCCTGCCCCCC
AAAAGCCGAAGCCCTCCAAGTCCCTGAAGACCATAAAATCCTCCCAATCC
TCTCCAGTACCACGCCCACCACAAGCTGCGGGGGCAACAGCAGCAGCAGG
AGGAATCAAAGAGGGACCTCTGCAAGACACTCCAATCGAGGGACAGGCCC
AAGAGACCTTCCTCGCGGAGGCTTCCGATTCACTGGTACGTGTCGATCGC
TTCCTGGCCCTGCGACTGCCTATGCAAAGTCGAAGCGCTCTGGGAGATAT
TTTCGACGAAGGTTTGGTTTTTGTCAATGGCATCCCTGCCCGGAAGAGCC
TAAAGCTTGTAGAGGGCGATAAGGTCGAAATTCAGGAGCACACACGTGCA
GGCATGTCAGACGACATCCGAGGAGAAGACATCCCTCTGACGGTTCTTTA
CGAAGACGAACACCTCATTGCAATAAATAAGGCTCCTGGTATGGTCGTGC
ATCCTGCCCCTGGTAACCGAAATGGGACGTTTGTCAACGCCCTCGTTTAC
CACGTCGCCCGCGGGGGGGGCAGCATCGAAACAACCGCCGGAAGCGAGGG
TCGTCCTGGTATAGTCCACCGTCTCGATAAAGGCACAAGTGGAGTCCTTC
TCGCCGCTAAAACAGCTAAAGCGCATGCTTCGTTGTCTGCTGCCTTTTCT
GAGCGGCGCGTGAATAAGACCTATTTGGCTATCAGCATTGGGAATCCTTC
TACGGAAGGAGCGGTGATTGACGTCCCAATTGGTCGCCATCCGCGGGATA
GACAGCGAATGGCTGTGGCGATGAAGGCAAGGGTGCCGATAGCTTATCTC
TCCTCGCATGGGAGAGGAGGCGTCTTGGACCATGCGGTGGAAGAAGAGGA
GGAGGAGGAGGAGGGGGAAGGAGGAGGGGATTTTGATTATGAAGGAGAGT
CGACGTATGAAGGAGAATTGCTCATGGGTCGGGGGGGTAACTCGGGAAGT
ACACCATTGTTGGGACGGACGGCAAGGAGCACGGTCAAGACGTTGGCATT
TGATGGGCGGTTGGGAGTGGTGGAGGTGGGGATTGAGACGGGGCGCACGC
ACCAGATCCGCGTGCATTTGCAACATCGACGGAATCCGGTGTTGGGGGAT
GACTTGTATGGAAATGCCCAGTGGAATGCGCGGGCGAAACGACGGTGGGG
AATAAAGAGACCGATGTTGCATGCGTTGAGAGTGGAGGTGGCGCATCCTG
TGACGGGCGTGCCGCTGCGGTTGGTTGCGCCGGTGCCCATGGACATGATG
AGTGTGGTGTCCAATATATGGCCGCAGACCAAAGGCAAGGAGGAGGAGGA
GTGGTGGGTGACAGCAGAGGGCCGGTTGAGTGAGAGGTGGGAGGAGGGGA
AGGAGGAAGAGGAGGAGGAGGAGGAGCTGGCACTGAGAGAGGAGAAAGAA
CGCGTAGCGCGCTTGATTCGAGAAGGGAAGATCGACAAATTCGGGTGGGA
GCTTGAGGGATGATAATTTCAAAGAGTAGAGGTCCGAAGTTAGATTATTG
GCCACTGTATAAGACAGAAAAGCACAATGTCACACAAATTGCATGAGACA
AGCACCTGATTGGTCCCATCTT

protein sequence of NO08G02660.1

>NO08G02660.1-protein ID=NO08G02660.1-protein|Name=NO08G02660.1|organism=Nannochloropsis oceanica|type=polypeptide|length=594bp
MANEGMRNTRRRRARPQQLRAVVVAAFSLVSVVNGFVSLPCDCGQPSMSS
SAQNRKASTNLMAANQPPWKRRGREQKRDAEDELALFEQNLLNHGVVQPG
PASPAPQKPKPSKSLKTIKSSQSSPVPRPPQAAGATAAAGGIKEGPLQDT
PIEGQAQETFLAEASDSLVRVDRFLALRLPMQSRSALGDIFDEGLVFVNG
IPARKSLKLVEGDKVEIQEHTRAGMSDDIRGEDIPLTVLYEDEHLIAINK
APGMVVHPAPGNRNGTFVNALVYHVARGGGSIETTAGSEGRPGIVHRLDK
GTSGVLLAAKTAKAHASLSAAFSERRVNKTYLAISIGNPSTEGAVIDVPI
GRHPRDRQRMAVAMKARVPIAYLSSHGRGGVLDHAVEEEEEEEEGEGGGD
FDYEGESTYEGELLMGRGGNSGSTPLLGRTARSTVKTLAFDGRLGVVEVG
IETGRTHQIRVHLQHRRNPVLGDDLYGNAQWNARAKRRWGIKRPMLHALR
VEVAHPVTGVPLRLVAPVPMDMMSVVSNIWPQTKGKEEEEWWVTAEGRLS
ERWEEGKEEEEEEEELALREEKERVARLIREGKIDKFGWELEG*

mRNA from alignment at chr8:746715..749086-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO08G02660.1 ID=NO08G02660.1|Name=NO08G02660.1|organism=Nannochloropsis oceanica|type=mRNA|length=2372bp|location=Sequence derived from alignment at chr8:746715..749086- (Nannochloropsis oceanica)
CCTCACCCCTTATTCATTCCTTTCTTGGGCCACCAATCGTAGCCTCTGGA
CCATTGCTTGAAGCGAGTTGTGACCAGTTTGCAGGTTTTGCATGCTGGCT
TATGTGACGGGTACAACATCAAAGGACGGACGAGGGACAAAATTGGTCGA
CCGTTGGGACGTCGAGGCAACGGCCTCTGTGAGAGGAACTTCCTTGAAGC
AAACGCATCTTCCTCCTTTTTGCTATGCAAGATAGTGCGCCTATTTTTTT
CGTTGTCACACATCAATAAACCAACAATGACAAGAGAACTTGGATCAGTT
TGAACCCACCCCTTCCTTCTCTCCACCACCACAACCACAAGCTCTAGCAA
GAAAACACCAACAACAGGCCCCCCGCCATCAACATCAACCAGCCGCAGCA
TCATCACCAGCAGCAGCAGCAGCGCTTGCGCTCATTCATCACATTTCGTA
GCTGCAGCTGTCCTCACCCCACTTGCCCGTCATGGCAAACGAGGGCATGC
GTAATACAAGAAGAAGAAGGGCAAGGCCTCAGCAGCTGCGCGCGGTGGTG
GTGGCAGCATTCAGCCTAGTATCCGTCGTCAATGGCTTTGTCTCCCTCCC
CTGCGACTGCGGGCAGCCCTCCATGTCGTCTTCCGCGCAAAACCGCAAGG
CAAGCACCAACCTGATGGCGGCTAATCAACCACCCTGGAAACGACGTGGA
CGGGAGCAAAAGCGGGACGCCGAAGACGAGCTAGCTCTATTCGAGCAAAA
TCTGTTGAACCACGGCGTCGTCCAACCAGGCCCGGCCTCCCCTGCCCCCC
AAAAGCCGAAGCCCTCCAAGTCCCTGAAGACCATAAAATCCTCCCAATCC
TCTCCAGTACCACGCCCACCACAAGCTGCGGGGGCAACAGCAGCAGCAGG
AGGAATCAAAGAGGGACCTCTGCAAGACACTCCAATCGAGGGACAGGCCC
AAGAGACCTTCCTCGCGGAGGCTTCCGATTCACTGGTACGTGTCGATCGC
TTCCTGGCCCTGCGACTGCCTATGCAAAGTCGAAGCGCTCTGGGAGATAT
TTTCGACGAAGGTTTGGTTTTTGTCAATGGCATCCCTGCCCGGAAGAGCC
TAAAGCTTGTAGAGGGCGATAAGGTCGAAATTCAGGAGCACACACGTGCA
GGCATGTCAGACGACATCCGAGGAGAAGACATCCCTCTGACGGTTCTTTA
CGAAGACGAACACCTCATTGCAATAAATAAGGCTCCTGGTATGGTCGTGC
ATCCTGCCCCTGGTAACCGAAATGGGACGTTTGTCAACGCCCTCGTTTAC
CACGTCGCCCGCGGGGGGGGCAGCATCGAAACAACCGCCGGAAGCGAGGG
TCGTCCTGGTATAGTCCACCGTCTCGATAAAGGCACAAGTGGAGTCCTTC
TCGCCGCTAAAACAGCTAAAGCGCATGCTTCGTTGTCTGCTGCCTTTTCT
GAGCGGCGCGTGAATAAGACCTATTTGGCTATCAGCATTGGGAATCCTTC
TACGGAAGGAGCGGTGATTGACGTCCCAATTGGTCGCCATCCGCGGGATA
GACAGCGAATGGCTGTGGCGATGAAGGCAAGGGTGCCGATAGCTTATCTC
TCCTCGCATGGGAGAGGAGGCGTCTTGGACCATGCGGTGGAAGAAGAGGA
GGAGGAGGAGGAGGGGGAAGGAGGAGGGGATTTTGATTATGAAGGAGAGT
CGACGTATGAAGGAGAATTGCTCATGGGTCGGGGGGGTAACTCGGGAAGT
ACACCATTGTTGGGACGGACGGCAAGGAGCACGGTCAAGACGTTGGCATT
TGATGGGCGGTTGGGAGTGGTGGAGGTGGGGATTGAGACGGGGCGCACGC
ACCAGATCCGCGTGCATTTGCAACATCGACGGAATCCGGTGTTGGGGGAT
GACTTGTATGGAAATGCCCAGTGGAATGCGCGGGCGAAACGACGGTGGGG
AATAAAGAGACCGATGTTGCATGCGTTGAGAGTGGAGGTGGCGCATCCTG
TGACGGGCGTGCCGCTGCGGTTGGTTGCGCCGGTGCCCATGGACATGATG
AGTGTGGTGTCCAATATATGGCCGCAGACCAAAGGCAAGGAGGAGGAGGA
GTGGTGGGTGACAGCAGAGGGCCGGTTGAGTGAGAGGTGGGAGGAGGGGA
AGGAGGAAGAGGAGGAGGAGGAGGAGCTGGCACTGAGAGAGGAGAAAGAA
CGCGTAGCGCGCTTGATTCGAGAAGGGAAGATCGACAAATTCGGGTGGGA
GCTTGAGGGATGATAATTTCAAAGAGTAGAGGTCCGAAGTTAGATTATTG
GCCACTGTATAAGACAGAAAAGCACAATGTCACACAAATTGCATGAGACA
AGCACCTGATTGGTCCCATCTT

Coding sequence (CDS) from alignment at chr8:746715..749086-

>NO08G02660.1 ID=NO08G02660.1|Name=NO08G02660.1|organism=Nannochloropsis oceanica|type=CDS|length=1782bp|location=Sequence derived from alignment at chr8:746715..749086- (Nannochloropsis oceanica)
ATGGCAAACGAGGGCATGCGTAATACAAGAAGAAGAAGGGCAAGGCCTCA
GCAGCTGCGCGCGGTGGTGGTGGCAGCATTCAGCCTAGTATCCGTCGTCA
ATGGCTTTGTCTCCCTCCCCTGCGACTGCGGGCAGCCCTCCATGTCGTCT
TCCGCGCAAAACCGCAAGGCAAGCACCAACCTGATGGCGGCTAATCAACC
ACCCTGGAAACGACGTGGACGGGAGCAAAAGCGGGACGCCGAAGACGAGC
TAGCTCTATTCGAGCAAAATCTGTTGAACCACGGCGTCGTCCAACCAGGC
CCGGCCTCCCCTGCCCCCCAAAAGCCGAAGCCCTCCAAGTCCCTGAAGAC
CATAAAATCCTCCCAATCCTCTCCAGTACCACGCCCACCACAAGCTGCGG
GGGCAACAGCAGCAGCAGGAGGAATCAAAGAGGGACCTCTGCAAGACACT
CCAATCGAGGGACAGGCCCAAGAGACCTTCCTCGCGGAGGCTTCCGATTC
ACTGGTACGTGTCGATCGCTTCCTGGCCCTGCGACTGCCTATGCAAAGTC
GAAGCGCTCTGGGAGATATTTTCGACGAAGGTTTGGTTTTTGTCAATGGC
ATCCCTGCCCGGAAGAGCCTAAAGCTTGTAGAGGGCGATAAGGTCGAAAT
TCAGGAGCACACACGTGCAGGCATGTCAGACGACATCCGAGGAGAAGACA
TCCCTCTGACGGTTCTTTACGAAGACGAACACCTCATTGCAATAAATAAG
GCTCCTGGTATGGTCGTGCATCCTGCCCCTGGTAACCGAAATGGGACGTT
TGTCAACGCCCTCGTTTACCACGTCGCCCGCGGGGGGGGCAGCATCGAAA
CAACCGCCGGAAGCGAGGGTCGTCCTGGTATAGTCCACCGTCTCGATAAA
GGCACAAGTGGAGTCCTTCTCGCCGCTAAAACAGCTAAAGCGCATGCTTC
GTTGTCTGCTGCCTTTTCTGAGCGGCGCGTGAATAAGACCTATTTGGCTA
TCAGCATTGGGAATCCTTCTACGGAAGGAGCGGTGATTGACGTCCCAATT
GGTCGCCATCCGCGGGATAGACAGCGAATGGCTGTGGCGATGAAGGCAAG
GGTGCCGATAGCTTATCTCTCCTCGCATGGGAGAGGAGGCGTCTTGGACC
ATGCGGTGGAAGAAGAGGAGGAGGAGGAGGAGGGGGAAGGAGGAGGGGAT
TTTGATTATGAAGGAGAGTCGACGTATGAAGGAGAATTGCTCATGGGTCG
GGGGGGTAACTCGGGAAGTACACCATTGTTGGGACGGACGGCAAGGAGCA
CGGTCAAGACGTTGGCATTTGATGGGCGGTTGGGAGTGGTGGAGGTGGGG
ATTGAGACGGGGCGCACGCACCAGATCCGCGTGCATTTGCAACATCGACG
GAATCCGGTGTTGGGGGATGACTTGTATGGAAATGCCCAGTGGAATGCGC
GGGCGAAACGACGGTGGGGAATAAAGAGACCGATGTTGCATGCGTTGAGA
GTGGAGGTGGCGCATCCTGTGACGGGCGTGCCGCTGCGGTTGGTTGCGCC
GGTGCCCATGGACATGATGAGTGTGGTGTCCAATATATGGCCGCAGACCA
AAGGCAAGGAGGAGGAGGAGTGGTGGGTGACAGCAGAGGGCCGGTTGAGT
GAGAGGTGGGAGGAGGGGAAGGAGGAAGAGGAGGAGGAGGAGGAGCTGGC
ACTGAGAGAGGAGAAAGAACGCGTAGCGCGCTTGATTCGAGAAGGGAAGA
TCGACAAATTCGGGTGGGAGCTTGAGGGATGA

Synonyms

Publications