NO08G02510, NO08G02510 (gene) Nannochloropsis oceanica

Overview
NameNO08G02510
Unique NameNO08G02510
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length420
Alignment locationchr8:721278..721697 +

Link to JBrowse

Properties
Property NameValue
DescriptionPol polyprotein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:721278..721697 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO08G02510 vs. NCBI_GenBank
Match: GBC13192.1 (gag-pol fusion protein [Rhizophagus irregularis DAOM 181602])

HSP 1 Score: 121.3 bits (303), Expect = 2.400e-24
Identity = 59/118 (50.00%), Postives = 77/118 (65.25%), Query Frame = 0
Query:   20 RLIAAGLTVSPAKRKFARYETTFLGFTVSKDGIKANPEAVSAVKNFPNTRNLRGVRAFVGLCSYYRCFIEGFSTIAGPLNDLTCNTTRWHWGKAQKGAFDKLKQALISAPVLAFPEPN 138
            RL  AGL ++P K KFA  E  FLG  +SKDGI+ +P  +S VK+FP   NL  +R F+GL SYYR FI+ FS IA PLN L      ++W  AQ+ AF+ LK  LIS+P+L +P+ N
Sbjct: 1326 RLRDAGLKLNPEKCKFASTELAFLGHVISKDGIRTDPGKISKVKDFPRPTNLTQLRGFLGLASYYRRFIKDFSKIANPLNKLLKKNVPFNWTNAQQQAFEYLKNCLISSPILTYPQWN 1443          
BLAST of NO08G02510 vs. NCBI_GenBank
Match: EGO04961.1 (hypothetical protein SERLA73DRAFT_24707, partial [Serpula lacrymans var. lacrymans S7.3])

HSP 1 Score: 120.9 bits (302), Expect = 3.100e-24
Identity = 58/119 (48.74%), Postives = 75/119 (63.03%), Query Frame = 0
Query:   20 RLIAAGLTVSPAKRKFARYETTFLGFTVSKDGIKANPEAVSAVKNFPNTRNLRGVRAFVGLCSYYRCFIEGFSTIAGPLNDLTCNTTRWHWGKAQKGAFDKLKQALISAPVLAFPEPNK 139
            RL    L V P K  F   E  FLG  + ++GI+ NPE V A+  +P    ++GVRAF+GL ++YR FIE F+ I  PLNDLT     W WG  ++ AFDKLKQA  +AP+LAFPE +K
Sbjct:   40 RLQERDLFVKPEKCNFKVKEVDFLGMIIGQNGIRMNPEKVQAILEWPEPTRVKGVRAFLGLGNFYRRFIENFAKITRPLNDLTKKDLVWQWGAKEQEAFDKLKQAFTTAPILAFPELDK 158          
BLAST of NO08G02510 vs. NCBI_GenBank
Match: XP_007314333.1 (hypothetical protein SERLADRAFT_433232 [Serpula lacrymans var. lacrymans S7.9] >EGO30091.1 hypothetical protein SERLADRAFT_433232 [Serpula lacrymans var. lacrymans S7.9])

HSP 1 Score: 120.9 bits (302), Expect = 3.100e-24
Identity = 58/119 (48.74%), Postives = 75/119 (63.03%), Query Frame = 0
Query:   20 RLIAAGLTVSPAKRKFARYETTFLGFTVSKDGIKANPEAVSAVKNFPNTRNLRGVRAFVGLCSYYRCFIEGFSTIAGPLNDLTCNTTRWHWGKAQKGAFDKLKQALISAPVLAFPEPNK 139
            RL    L V P K  F   E  FLG  + ++GI+ NPE V A+  +P    ++GVRAF+GL ++YR FIE F+ I  PLNDLT     W WG  ++ AFDKLKQA  +AP+LAFPE +K
Sbjct:  488 RLQERDLFVKPEKCNFKVKEVDFLGMIIGQNGIRMNPEKVQAILEWPEPTRVKGVRAFLGLGNFYRRFIENFAKITRPLNDLTKKDLVWQWGAKEQEAFDKLKQAFTTAPILAFPELDK 606          
BLAST of NO08G02510 vs. NCBI_GenBank
Match: XP_007313168.1 (putative retrotransposon [Serpula lacrymans var. lacrymans S7.9] >EGO31284.1 putative retrotransposon [Serpula lacrymans var. lacrymans S7.9])

HSP 1 Score: 118.6 bits (296), Expect = 1.500e-23
Identity = 57/119 (47.90%), Postives = 75/119 (63.03%), Query Frame = 0
Query:   20 RLIAAGLTVSPAKRKFARYETTFLGFTVSKDGIKANPEAVSAVKNFPNTRNLRGVRAFVGLCSYYRCFIEGFSTIAGPLNDLTCNTTRWHWGKAQKGAFDKLKQALISAPVLAFPEPNK 139
            RL    L V P K  F   E  FLG  + ++ I+ NPE V A+ ++P    ++GVRAF+GL ++YR FIE F+ I  PLNDLT     WHW   ++ AFDKLKQA  +AP+LAFPE +K
Sbjct:  746 RLQERDLFVKPEKCNFNVKEVDFLGMIIGQNRIRMNPEKVQAILDWPEPTRVKGVRAFLGLGNFYRRFIENFAKITRPLNDLTKKDIVWHWSAKEQEAFDKLKQAFTTAPILAFPELDK 864          
BLAST of NO08G02510 vs. NCBI_GenBank
Match: KXJ11369.1 (Transposon Ty3-I Gag-Pol polyprotein [Exaiptasia pallida])

HSP 1 Score: 118.6 bits (296), Expect = 1.500e-23
Identity = 58/118 (49.15%), Postives = 75/118 (63.56%), Query Frame = 0
Query:   20 RLIAAGLTVSPAKRKFARYETTFLGFTVSKDGIKANPEAVSAVKNFPNTRNLRGVRAFVGLCSYYRCFIEGFSTIAGPLNDLTCNTTRWHWGKAQKGAFDKLKQALISAPVLAFPEPN 138
            RL AA L +  AK KFAR    FLG  VS DGI+ NP  + AVK FP     + VR+F+GL +YYR F++GF+ +A PLN LT    R+ W    + AF+KLK AL SAP+L +P+ N
Sbjct:  778 RLRAANLKLKTAKCKFARNSVAFLGHIVSSDGIRPNPAKIEAVKTFPVPTKTKDVRSFLGLANYYRRFVKGFAELASPLNALTSKHKRFEWTPQCQIAFEKLKDALCSAPILVYPDFN 895          
BLAST of NO08G02510 vs. NCBI_GenBank
Match: KXJ12376.1 (Transposon Ty3-I Gag-Pol polyprotein [Exaiptasia pallida])

HSP 1 Score: 118.6 bits (296), Expect = 1.500e-23
Identity = 53/116 (45.69%), Postives = 77/116 (66.38%), Query Frame = 0
Query:   20 RLIAAGLTVSPAKRKFARYETTFLGFTVSKDGIKANPEAVSAVKNFPNTRNLRGVRAFVGLCSYYRCFIEGFSTIAGPLNDLTCNTTRWHWGKAQKGAFDKLKQALISAPVLAFPE 136
            RL +A L + P+K  FA     FLG  +++DGI  NP+ +SAVKNFP  + ++ VR+F+GL +YYR F+  F+ IA PLN L C   ++ W +  + AFDKLK AL  +P+LA+P+
Sbjct:  652 RLRSANLRLKPSKCDFATKSVKFLGHIITRDGISPNPDKISAVKNFPVPKCVKEVRSFLGLANYYRRFVNSFAKIAAPLNALMCKDKQFFWSEQCQSAFDKLKAALCESPILAYPD 767          
BLAST of NO08G02510 vs. NCBI_GenBank
Match: KXJ15017.1 (Transposon Ty3-G Gag-Pol polyprotein [Exaiptasia pallida])

HSP 1 Score: 118.2 bits (295), Expect = 2.000e-23
Identity = 55/115 (47.83%), Postives = 77/115 (66.96%), Query Frame = 0
Query:   20 RLIAAGLTVSPAKRKFARYETTFLGFTVSKDGIKANPEAVSAVKNFPNTRNLRGVRAFVGLCSYYRCFIEGFSTIAGPLNDLTCNTTRWHWGKAQKGAFDKLKQALISAPVLAFP 135
            RL  A + + P K  FA     +LG  +S DG++ NP+ + AV  FP  +NL+GVR+F+GL +YYR F+  F+ IA PLN+LT  + ++ W +  + AFD LKQALISAP+LAFP
Sbjct:  673 RLRDADIRLKPTKCAFASPTIEYLGHIISADGVRPNPDKIKAVAEFPIPKNLKGVRSFLGLANYYRRFVHNFAKIAVPLNNLTRKSVKFQWTQECQTAFDTLKQALISAPILAFP 787          
BLAST of NO08G02510 vs. NCBI_GenBank
Match: KMQ92283.1 (reverse ribonuclease integrase [Lasius niger])

HSP 1 Score: 117.9 bits (294), Expect = 2.600e-23
Identity = 53/116 (45.69%), Postives = 75/116 (64.66%), Query Frame = 0
Query:   20 RLIAAGLTVSPAKRKFARYETTFLGFTVSKDGIKANPEAVSAVKNFPNTRNLRGVRAFVGLCSYYRCFIEGFSTIAGPLNDLTCNTTRWHWGKAQKGAFDKLKQALISAPVLAFPE 136
            RL  A L ++P K +F   +  +LG  + +DGI+ +PE VSAV N+P    ++ +R F+G+ S+YR FI  FS++A PL  LT    RW WG  +K AFD+LK  L+SAPVLA P+
Sbjct:  293 RLRDARLRLNPEKCRFCVGQLKYLGHVIDRDGIRTDPEKVSAVANWPEPTTIKQIRQFLGMASWYRRFIANFSSVAAPLTQLTRKNARWAWGATEKEAFDRLKHTLVSAPVLACPD 408          
BLAST of NO08G02510 vs. NCBI_GenBank
Match: KMQ85886.1 (reverse ribonuclease integrase, partial [Lasius niger])

HSP 1 Score: 117.1 bits (292), Expect = 4.400e-23
Identity = 55/116 (47.41%), Postives = 75/116 (64.66%), Query Frame = 0
Query:   20 RLIAAGLTVSPAKRKFARYETTFLGFTVSKDGIKANPEAVSAVKNFPNTRNLRGVRAFVGLCSYYRCFIEGFSTIAGPLNDLTCNTTRWHWGKAQKGAFDKLKQALISAPVLAFPE 136
            RL  A L ++P K +F   +  +LG  + +DGI+ +PE VSAV N+P    ++ VR F+G+ S+YR FI  FS+IA PL  LT    RW WG  +K AFD+LK  L+SAPVLA P+
Sbjct:  298 RLRDARLRLNPEKCRFCVGQLKYLGHVIDRDGIRTDPEKVSAVANWPEPTTIKQVRQFLGMASWYRQFIANFSSIAAPLTRLTRKNARWAWGLIEKEAFDRLKHTLVSAPVLACPD 413          
BLAST of NO08G02510 vs. NCBI_GenBank
Match: EXX52028.1 (gag-pol fusion protein [Rhizophagus irregularis DAOM 197198w])

HSP 1 Score: 116.7 bits (291), Expect = 5.800e-23
Identity = 56/119 (47.06%), Postives = 76/119 (63.87%), Query Frame = 0
Query:   20 RLIAAGLTVSPAKRKFARYETTFLGFTVSKDGIKANPEAVSAVKNFPNTRNLRGVRAFVGLCSYYRCFIEGFSTIAGPLNDLTCNTTRWHWGKAQKGAFDKLKQALISAPVLAFPEPNK 139
            RL  AGL ++P K  F + E  FLG  VS  GI+ +P  +  VK+FP   N+  +R F GL SYYR F+ GFS IA PLN L      ++WG+ Q+ AF++LKQ LI++P+L FP+ NK
Sbjct:  213 RLEDAGLKLNPDKCSFVKEELEFLGHIVSNRGIRTDPAKIQKVKDFPTPLNVTQLRGFFGLASYYRRFVPGFSRIATPLNKLLKKGVAYNWGEKQQVAFEQLKQTLITSPILVFPDFNK 331          
The following BLAST results are available for this feature:
BLAST of NO08G02510 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
GBC13192.12.400e-2450.00gag-pol fusion protein [Rhizophagus irregularis DA... [more]
EGO04961.13.100e-2448.74hypothetical protein SERLA73DRAFT_24707, partial [... [more]
XP_007314333.13.100e-2448.74hypothetical protein SERLADRAFT_433232 [Serpula la... [more]
XP_007313168.11.500e-2347.90putative retrotransposon [Serpula lacrymans var. l... [more]
KXJ11369.11.500e-2349.15Transposon Ty3-I Gag-Pol polyprotein [Exaiptasia p... [more]
KXJ12376.11.500e-2345.69Transposon Ty3-I Gag-Pol polyprotein [Exaiptasia p... [more]
KXJ15017.12.000e-2347.83Transposon Ty3-G Gag-Pol polyprotein [Exaiptasia p... [more]
KMQ92283.12.600e-2345.69reverse ribonuclease integrase [Lasius niger][more]
KMQ85886.14.400e-2347.41reverse ribonuclease integrase, partial [Lasius ni... [more]
EXX52028.15.800e-2347.06gag-pol fusion protein [Rhizophagus irregularis DA... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G02510.1NO08G02510.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G02510.1NO08G02510.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G02510 ID=NO08G02510|Name=NO08G02510|organism=Nannochloropsis oceanica|type=gene|length=420bp
ATGACATCTGCGTCTTCAGCAAAACAGCAGATCACGTGCGGGACGTGGCC
TTGGTGCAGGCTGATTGCGGCTGGGCTGACGGTATCCCCGGCCAAGCGCA
AGTTCGCGCGCTATGAGACAACGTTTTTGGGCTTCACCGTCTCCAAGGAT
GGCATCAAGGCCAACCCGGAGGCAGTATCGGCGGTCAAGAATTTTCCTAA
CACCAGGAACCTGCGCGGCGTGCGGGCATTCGTGGGCCTATGCTCATACT
ACCGGTGCTTCATCGAGGGCTTCTCCACCATCGCCGGACCACTCAATGAT
CTCACGTGCAACACCACGCGCTGGCACTGGGGCAAGGCGCAAAAAGGGGC
GTTTGACAAACTCAAGCAGGCGCTCATCTCGGCACCAGTGCTGGCCTTCC
CAGAACCCAACAAGGGGTAG
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protein sequence of NO08G02510.1

>NO08G02510.1-protein ID=NO08G02510.1-protein|Name=NO08G02510.1|organism=Nannochloropsis oceanica|type=polypeptide|length=140bp
MTSASSAKQQITCGTWPWCRLIAAGLTVSPAKRKFARYETTFLGFTVSKD
GIKANPEAVSAVKNFPNTRNLRGVRAFVGLCSYYRCFIEGFSTIAGPLND
LTCNTTRWHWGKAQKGAFDKLKQALISAPVLAFPEPNKG*
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Synonyms
Publications