NO08G02350, NO08G02350 (gene) Nannochloropsis oceanica

Overview
NameNO08G02350
Unique NameNO08G02350
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2647
Alignment locationchr8:686268..688914 -

Link to JBrowse

Properties
Property NameValue
DescriptionPentatricopeptide repeat containining protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:686268..688914 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO08G02350 vs. NCBI_GenBank
Match: EWM26729.1 (Pentatricopeptide repeat containining protein [Nannochloropsis gaditana])

HSP 1 Score: 719.9 bits (1857), Expect = 8.900e-204
Identity = 496/691 (71.78%), Postives = 567/691 (82.05%), Query Frame = 0
Query:  109 IPPSVGKAQQSRAERGRQLNNELARIKVAGPVVDNELYLKALRSCAKLGNVKMAMTLLRQMQQQSPPPR-------VAYNLVLEAAARAQDRNVAVCVYTEMLWG-----RDGDGAEAIGVNVFTYGQMLSLYANLADGPAALALLKEMAAQGVAGNAFTYTSAIDACERSGLVGETERLXXXXXXXXXXXXXXXXNTIIARRAEQADTWTEALDWLAKLEASGIEPLRSSYAAALNACERAEEWELVVELTERAGSLADTTMWSRNLAALIKLMRHEEALAIFRRLREEQTVPMDEVLYTLALKACALARRPYGEARALLEEMRAAGLAPNVVTFSAAMEACNGDRDSEGMPNWEMXXXXXXXXXXXXXXXXXXXXXXXXXXLTEAGQWQRALHLFMTLEKDGEQAGATKSVWLYTAAIRACAQGRQLETALALLREVTADPARHGVPNLXXXXXXXXXXXXXXXXXXXXXXXXXMAREHSIVVDDVACGVVISACRKAGLVGDCLRLLAFMLNHRLAPNLGVYNTVIGALCSQPKYVDKAIEVLSFLVASQRPGNANISGSSRSARAPRPNTQSYSQVVDALADALRWDEALRLLQEMRDAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEYSFYELELLDQVFKKLVGVAAAGLRSISRGGGATEGGTVESTAAGTGVGRQG 788
            + PS G+ ++ RAERGRQL NELARI+ AG     +LY+KALRSCAKLG V +AM LLRQMQ+Q   PR       +A+NLVLEAAA+AQDR+VA+ VY EML G       G  +  +GVNVFTYGQ+LSL+A LADG AAL +L+EMAAQ                            XXXXXXXXXXXXXXXX TIIARRAE+ DTWTEALDWLAKLEASGI+PLRSSYAAA+NACERAEEWELVVELTERA  LADTTMWSR+L+A+++L RHE  LA FR+LREE+T+P+DEV+YTLALKACAL  RP+ EARALL +MR +GL PNVVTFSAAMEAC GD DS G PNWEM  XXXXXXXXXXXXXXXXXXXXXXX LT++GQWQRALH+FMTLE++ +QA   K+VWLYTAAIRACA+G+Q++TA+ALLREVT DP+ HG P+LXXXXXXXXXXXXXXXXXXXXXXXXX   +H+I+VDDVACGVVISACRKAGLVGDCLRLLAFMLNHRLAPNLGVYNTV+GALCSQP+Y+DKAIEVL FL ASQ   ++N++  S+ +R PRPN QS+SQV+DALADALRW++AL LLQEMR+ G XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD+YSFYELELLDQVFKKLVGVAAAGLRSIS  GGA +  T E+  A T  GR+G
Sbjct:  129 LTPSAGRIRRFRAERGRQLENELARIEAAGARAGLDLYIKALRSCAKLGKVDVAMMLLRQMQEQPAGPRRVPATPLLAFNLVLEAAAKAQDRDVALSVYNEMLCGVGEKAATGPASPGVGVNVFTYGQLLSLFAKLADGRAALDILEEMAAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTIIARRAERVDTWTEALDWLAKLEASGIQPLRSSYAAAINACERAEEWELVVELTERAEELADTTMWSRSLSAMLRLGRHESVLATFRQLREEKTIPVDEVMYTLALKACALGHRPFHEARALLMDMRTSGLTPNVVTFSAAMEACGGDTDSNGAPNWEMALXXXXXXXXXXXXXXXXXXXXXXXILTDSGQWQRALHIFMTLEREEDQAEVPKTVWLYTAAIRACAKGQQIDTAIALLREVTTDPSAHGAPDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHNIIVDDVACGVVISACRKAGLVGDCLRLLAFMLNHRLAPNLGVYNTVLGALCSQPEYLDKAIEVLHFLKASQPSSSSNLNLRSKPSRTPRPNAQSFSQVIDALADALRWEDALSLLQEMRNVGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDYSFYELELLDQVFKKLVGVAAAGLRSIS--GGAAD-STSETARAATDSGREG 816          
BLAST of NO08G02350 vs. NCBI_GenBank
Match: EWM26730.1 (Pentatricopeptide repeat containining protein [Nannochloropsis gaditana])

HSP 1 Score: 719.9 bits (1857), Expect = 8.900e-204
Identity = 496/691 (71.78%), Postives = 567/691 (82.05%), Query Frame = 0
Query:  109 IPPSVGKAQQSRAERGRQLNNELARIKVAGPVVDNELYLKALRSCAKLGNVKMAMTLLRQMQQQSPPPR-------VAYNLVLEAAARAQDRNVAVCVYTEMLWG-----RDGDGAEAIGVNVFTYGQMLSLYANLADGPAALALLKEMAAQGVAGNAFTYTSAIDACERSGLVGETERLXXXXXXXXXXXXXXXXNTIIARRAEQADTWTEALDWLAKLEASGIEPLRSSYAAALNACERAEEWELVVELTERAGSLADTTMWSRNLAALIKLMRHEEALAIFRRLREEQTVPMDEVLYTLALKACALARRPYGEARALLEEMRAAGLAPNVVTFSAAMEACNGDRDSEGMPNWEMXXXXXXXXXXXXXXXXXXXXXXXXXXLTEAGQWQRALHLFMTLEKDGEQAGATKSVWLYTAAIRACAQGRQLETALALLREVTADPARHGVPNLXXXXXXXXXXXXXXXXXXXXXXXXXMAREHSIVVDDVACGVVISACRKAGLVGDCLRLLAFMLNHRLAPNLGVYNTVIGALCSQPKYVDKAIEVLSFLVASQRPGNANISGSSRSARAPRPNTQSYSQVVDALADALRWDEALRLLQEMRDAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEYSFYELELLDQVFKKLVGVAAAGLRSISRGGGATEGGTVESTAAGTGVGRQG 788
            + PS G+ ++ RAERGRQL NELARI+ AG     +LY+KALRSCAKLG V +AM LLRQMQ+Q   PR       +A+NLVLEAAA+AQDR+VA+ VY EML G       G  +  +GVNVFTYGQ+LSL+A LADG AAL +L+EMAAQ                            XXXXXXXXXXXXXXXX TIIARRAE+ DTWTEALDWLAKLEASGI+PLRSSYAAA+NACERAEEWELVVELTERA  LADTTMWSR+L+A+++L RHE  LA FR+LREE+T+P+DEV+YTLALKACAL  RP+ EARALL +MR +GL PNVVTFSAAMEAC GD DS G PNWEM  XXXXXXXXXXXXXXXXXXXXXXX LT++GQWQRALH+FMTLE++ +QA   K+VWLYTAAIRACA+G+Q++TA+ALLREVT DP+ HG P+LXXXXXXXXXXXXXXXXXXXXXXXXX   +H+I+VDDVACGVVISACRKAGLVGDCLRLLAFMLNHRLAPNLGVYNTV+GALCSQP+Y+DKAIEVL FL ASQ   ++N++  S+ +R PRPN QS+SQV+DALADALRW++AL LLQEMR+ G XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD+YSFYELELLDQVFKKLVGVAAAGLRSIS  GGA +  T E+  A T  GR+G
Sbjct:  139 LTPSAGRIRRFRAERGRQLENELARIEAAGARAGLDLYIKALRSCAKLGKVDVAMMLLRQMQEQPAGPRRVPATPLLAFNLVLEAAAKAQDRDVALSVYNEMLCGVGEKAATGPASPGVGVNVFTYGQLLSLFAKLADGRAALDILEEMAAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTIIARRAERVDTWTEALDWLAKLEASGIQPLRSSYAAAINACERAEEWELVVELTERAEELADTTMWSRSLSAMLRLGRHESVLATFRQLREEKTIPVDEVMYTLALKACALGHRPFHEARALLMDMRTSGLTPNVVTFSAAMEACGGDTDSNGAPNWEMALXXXXXXXXXXXXXXXXXXXXXXXILTDSGQWQRALHIFMTLEREEDQAEVPKTVWLYTAAIRACAKGQQIDTAIALLREVTTDPSAHGAPDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHNIIVDDVACGVVISACRKAGLVGDCLRLLAFMLNHRLAPNLGVYNTVLGALCSQPEYLDKAIEVLHFLKASQPSSSSNLNLRSKPSRTPRPNAQSFSQVIDALADALRWEDALSLLQEMRNVGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDYSFYELELLDQVFKKLVGVAAAGLRSIS--GGAAD-STSETARAATDSGREG 826          
BLAST of NO08G02350 vs. NCBI_GenBank
Match: GAX28990.1 (hypothetical protein FisN_1Hh012 [Fistulifera solaris])

HSP 1 Score: 78.6 bits (192), Expect = 1.000e-10
Identity = 148/668 (22.16%), Postives = 229/668 (34.28%), Query Frame = 0
Query:  150 LRSCAKLGNVKMAMTLLRQ-----MQQQSPPPRVAYNLVLEAAARAQDRNVAVCVYTEMLWGRDGDGAEAIGVNVFTYGQMLSLYANLADGPAALALLKEMAAQG---VAGNAFTYTSAIDACERSGLVGETERLXXXXXXXXXXXXXXXXNTIIARRAEQADTWTEALDWLAKLEASGIEPLRSSYAAALNACERAEEWELVVELTERAGSLADTTMW-----SRNLAALIKLMRHEEALAIFRRLREEQTVPMDE---VLYTLALKACALARRPYGEARALLEEMRAAGLAPNVVTFSAAMEACNGDRDSEGMPNWEMXXXXXXXXXXXXXXXXXXXXXXXXXXLTEAGQWQRALHLFMTLEKDGEQAGATKSVWLYTAAIRACAQGRQLETALALLREVTADPARHG---------VPNLXXXXXXXXXXXXXXXXXXXXXXXXXM--AREHSIVVDDVACGVVISACRKAGLVGDCLRLLAFML-NHRLAPNLGVYNTVIGALCSQPKYVDKAIEVLSFLVASQRPGNANISGSSRSARAPRPNTQSYSQVVDALADALRWDEALRLLQEMRDAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEYSFYELELLDQVFKKLVGVAAAGLRSISRGGGATEGGTVESTAAGTGVGRQGHE 790
            L +CA+ G+   A   LRQ      +    P  V Y   + A  +A D      ++ E L        + I + V  Y  ++S  A   D   A+A++K+M A      A +A TY + + ACE +G                                     W + L+    ++  G +    + ++ L+AC++    E  ++L E+  +L  T        +  LA                    E   P +E   V YT A+  C  +   +  A  L++ MR  G+ PN +TF A + AC                                        +T +  +Q+A+ L   L+KD        ++ +Y AA+R CA+   L+ A AL  E+  D               PN+                         M       I  +++  G  +SACR+A        L   ML N +L PN+  YNTV+ A          A  +  F      P               +PN QSY  ++ ALA   R  EAL LLQ+M+ AG                                 D Y FY   +LD  FK+ V + +    S+ RG    +    +S  AG G  R  +E
Sbjct:    3 LNACARAGDAVTAQRWLRQANTLFARNPIAPNEVCYQACMTACVQANDFASCRKLFHEAL-------EKGIPLTVIGYNIVVSAAAKQGDWQTAMAVVKQMQAPNSTTPAPDAVTYGTLLAACEAAG------------------------------------QWLQVLEQAQAMKNEGFDLDVRALSSCLHACQQLGRAEQALQLLEQMEALPATDTQVPDAVAYRLALSXXXXXXXXXXXXXXXXXLETHFPHEEANVVAYTAAIAGCE-SEGQWKVAFRLVDRMRKRGVQPNEMTFVAVLAAC----------------ATACARQASTLASKTSTDVSAPKDITSSEPYQQAMKLLRVLKKD--TTVVNPNIHVYNAALRVCAEACDLKGAFALYNELIEDRDSSANIPEGTVTLAPNIVTFGTLMTACERVGSMEGVTQVFRWMQDLSGPPIKPNEIVYGAALSACRRAQNDERSFFLFEQMLQNPKLRPNVATYNTVLLAQTEAGTKTSTARALSVFRSLYNSP-------------YTQPNRQSYQIIIRALALDRRPLEALTLLQQMQQAGFRPDVDLYTCTVAAFEKTGQPAQALKLMEAMRADGYDFYSNGVLDAAFKQGVQIVS----SVQRGLETKK--MPKSLDAGLGAPRSFNE 589          
BLAST of NO08G02350 vs. NCBI_GenBank
Match: GAX11622.1 (hypothetical protein FisN_1Lh012 [Fistulifera solaris])

HSP 1 Score: 71.6 bits (174), Expect = 1.300e-8
Identity = 149/721 (20.67%), Postives = 238/721 (33.01%), Query Frame = 0
Query:  142 DNELYLKALRSCAKLGNVKMAMTLLRQMQQQSPPPRVA--YNLVLEAAARAQDRNVAVCVYTEMLWGRDGDGAEAIGVNVFTYGQMLSLYANLADGPAALALLKE----MAAQGVAGNAFTYTSAIDACERSGLVGETERLXXXXXXXXXXXXXXXXNTIIARRAEQADTWTEALDWLAKLEASGIE---PLRSSYAAALNACERAEEWELVVELTE---RAGSLADTTMWSRNLAALIKLMRHEEALAIFRRLREEQTVPM------DEVLYTLALKACALARRPYGEARALLEE-------------------------------------MRAAGLAPNVVTFSAAMEACNGDRDSEGMPNWEMXXXXXXXXXXXXXXXXXXXXXXXXXXLTEAGQWQRALHLFMTLEKDGEQAGATKSVWLYTAAIRACAQGRQLETALALLREVTADP-ARHGVPNLXXXXXXXXXXXXXXXXXXXXXXXXXMAREHSIVVDDVACGVVISACRKAGLVGDCLRLLAFM---------------------------------------LNHRLAPNLGVYNTVIGALCSQPKYVD--KAIEVLSFLVASQRPGNANISGSSRSARAPRPNTQSYSQVVDALADALRWDEALRLLQEMRDAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEYSFYELELLDQVFKKLVGVAAAGLRSISRG 766
            D+  + + +R   + G    A+ L   + QQS         N  ++A ARA    +   +            +    VNV+T G +L+  A   D   A   L++         +  N   Y + + AC ++       +L                N +++  A+Q D W  A+  + +++A       P   +Y   L ACE A +W  V+E  +     G   D    S  L A  +L R ++AL +   L + + +PM      D V Y LAL ACA   +   E   LLE+                                     MR  G+ PN +TF A + AC                                        +T +  +Q+A+ L   ++KD        ++ +Y AA+R CA+   L  A AL  E+   P +   VP                                S+  + V  G +++AC + G +    ++  +M                                        N +L PN+  YNTV+ A       +   +A+ V   L  S                  +PN QSY  ++ ALA   R  EA+ LLQ+M+ AG                                 D Y FY   +LD  FK+ V + +    S+ RG
Sbjct:    3 DSSSWEQRIRKAGRQGRTDEAIELYETLLQQSSSFLTIRHVNSAIDALARASPPRLEQALQLAQ--------SSPCRVNVYTLGMLLNACARAGDAATAQRWLRQANTLFPRNPITPNEVCYQACMTACVQANDFAACRKLFHEALEKGIPLTVIGYNIVLSAAAKQGD-WQTAMAVVKQMQAPNSTTPVPDAVTYGTLLAACEAAGQWLQVLEQAQAMKNEGFHLDVRALSSCLHACQQLGRADQALQL---LEQMEALPMIDTQVPDAVAYRLALSACARGGK-LAEGLRLLEKLETQFSHEEANXXXXXXXXXXXXXXXXXXXXXXXXXXMRKRGVQPNEMTFVAVLAAC----------------ATACARQAFSLASKTSTDLSAPKNITSSEPYQQAMKLLRVMKKD--PTVVNPNIHVYNAALRVCAEACDLTGAFALYSELLEGPDSSSNVPE----------------------------GTVSLKPNIVTFGTLMTACERVGSMEGVSQVFRWMQEFSDPPXXXXXXXXXXXXXXXXXXXXXERSFFLFEQMLRNQKLRPNVATYNTVLLAQTEANTKISMTRALSVFRSLYNSP---------------YTQPNRQSYQIMIRALALDRRPLEAMTLLQQMQQAGFRPDVDLYTCTVTAFEKTGQPAQALKLMEAMRADGYDFYSNGVLDAAFKQGVQIVS----SVQRG 645          
BLAST of NO08G02350 vs. NCBI_GenBank
Match: XP_024518174.1 (pentatricopeptide repeat-containing protein At3g57430, chloroplastic [Selaginella moellendorffii])

HSP 1 Score: 70.9 bits (172), Expect = 2.200e-8
Identity = 126/539 (23.38%), Postives = 197/539 (36.55%), Query Frame = 0
Query:  150 LRSCAKLGNVKMAMTLLRQMQQQS-PPPRVAYNLVLEAAARAQDRN---------------VAVCVYTEM--LWGRDGDGAEAIGV-------NVFTYGQMLSLYANLADGPAALALLKEMAAQGVAGNAFTYTSAIDACERSGLVGETERLXXXXXXXXXXXXXXXXNTIIARRAEQAD-----------------TWT-------------EALDWLAKLEASGIEPLRSSYAAALNACERAEE----------------------WELVVELTERAGSL------------ADTTMWSRNLAALIKLMRHEEALAIFRRLREEQTVPMDEVLYTLALKACALARRPYGEARALLEEMRAAGLAPNVVTFSAA--MEACNGDRDSEGMPNWEMXXXXXXXXXXXXXXXXXXXXXXXXXXLTEAGQWQRALHLFMTLEKDGEQAGATKSVWLYTAAIRACAQGRQLETALALLREVTADPARHGVPNLXXXXXXXXXXXXXXXXXXXXXXXXXMAREHSIVVDDVACGVVISACRKAG 598
            L S  +LG+ + AM L R M  +   P R +   +L A A  +D                 + V V T +  ++G+ G  AEA GV       +V ++  M++ YA    G  AL LLK+M  +G+  +  T+ S +DAC  SG +                      NT+++   + A                  +W              EAL  L K++  G++P + SY A LNAC    E                         ++ L  + GSL             D   W+  L A I+L   +EAL +F+ +  E T P D+V Y LAL ACA A  P  + +     + + GL  +    +A   M A  G+ D+    N E                             + G  + +L LF  +++DG +A        +  AI +C+    ++ A+A    +  D   HG+  L                          A E S+ +D V+    +SACR  G
Sbjct:  109 LTSYTQLGHAREAMELSRLMSMEGFRPNRASLLGLLAACATLEDLEQGRKFHATFLASGFMMDVFVETTLVNMYGKCGSLAEARGVLEGMEVKSVVSWNAMITAYAQHRHGREALELLKKMDLEGIPPSKVTFVSILDACASSGDLTRGRSAHSRAIATGFGGDVNVNNTLVSMYGKCASLDEARKVFDEMPSRDLVSWNALAVEYSQHGCGKEALKLLWKMDLEGLKPDKISYTALLNACVYTGEESAKAMHRRVLASGFQLDGNIVANFLINLYAKCGSLENSKCVFDGLKKKDVVSWNAMLTAYIQLDSPKEALKLFQAMDMEGTKP-DQVSYVLALDACAGAVAP-TQGKLFHSRVASQGLDSDDTVRNAIVNMYAECGNLDA---ANREFERIKRRDVVSWTVMVAAN---------AQHGNPRDSLKLFWKMQQDGTKADDVS----FLCAILSCSHSGLVKDAMACFSSMVED---HGIQPLAEHFGCVVDALAKVGRLGE-------AEEFSLAMDAVSWRAFLSACRVHG 619          
BLAST of NO08G02350 vs. NCBI_GenBank
Match: XP_024539939.1 (pentatricopeptide repeat-containing protein At4g18520, chloroplastic [Selaginella moellendorffii])

HSP 1 Score: 69.3 bits (168), Expect = 6.300e-8
Identity = 127/539 (23.56%), Postives = 199/539 (36.92%), Query Frame = 0
Query:  150 LRSCAKLGNVKMAMTLLRQMQQQS-PPPRVAYNLVLEAAARAQDRN---------------VAVCVYTEM--LWGRDGDGAEAIGV-------NVFTYGQMLSLYANLADGPAALALLKEMAAQGVAGNAFTYTSAIDACERSGLVGETERLXXXXXXXXXXXXXXXXNTIIA-----RRAEQAD------------TWT-------------EALDWLAKLEASGIEPLRSSYAAALNACERAEE----------------------WELVVELTERAGSL------------ADTTMWSRNLAALIKLMRHEEALAIFRRLREEQTVPMDEVLYTLALKACALARRPYGEARALLEEMRAAGLAPNVVTFSAA--MEACNGDRDSEGMPNWEMXXXXXXXXXXXXXXXXXXXXXXXXXXLTEAGQWQRALHLFMTLEKDGEQAGATKSVWLYTAAIRACAQGRQLETALALLREVTADPARHGVPNLXXXXXXXXXXXXXXXXXXXXXXXXXMAREHSIVVDDVACGVVISACRKAG 598
            L S  +LG+ + AM L R M  +   P R +   +L A A  +D                 + V V T +  ++G+ G  AEA GV       +V ++  M++ YA    G  AL LLK+M  +G+  +  T+ S +DAC  SG +                      NT+++      R ++A             +W              EAL  L K++  G++P + SY A LNAC    E                         ++ L  + GSL             D   W+  L A I+L   +EAL +F+ +  E T P D+V Y LAL ACA A  P  + +     + + GL  +    +A   M A  G+ D+    N E                             + G  + +L LF  +++DG +A        +  AI +C+    ++ A+A    +  D   HG+  L                          A E S+ +D V+    +SACR  G
Sbjct:  364 LTSYTQLGHAREAMELSRLMSMEGFRPNRASLLGLLAACATLEDLEQGRKFHATFLASGFMMDVFVETTLVNMYGKCGSLAEARGVLEGMEVKSVVSWNAMITAYAQHRHGREALELLKKMDLEGIPPSKVTFVSILDACASSGDLTRGRSAHSRAIATGFGGDVNVNNTLVSMYGKCARLDEARKVFDEMPSRDLVSWNALAVEYSQHGCGKEALKLLWKMDLEGLKPDKISYTALLNACVYTGEESAKAMHRRVLASGFQLDGNIVANFLINLYAKCGSLENSKCVFDGLKKKDVVSWNAMLTAYIQLDSPKEALKLFQAMDMEGTKP-DQVSYVLALDACAGAVAP-TQGKLFHFRVASQGLDSDDTVRNAIVNMYAECGNLDA---ANREFERIKRRDVVSWTVMVAAN---------AQHGNPRDSLKLFWKMQQDGTKADDVS----FLCAILSCSHSGLVKDAMACFSSMVED---HGIQPLAEHFGCLVDALAKVGRLGE-------AEEFSLAMDAVSWRAFLSACRVHG 874          
The following BLAST results are available for this feature:
BLAST of NO08G02350 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 6
Match NameE-valueIdentityDescription
EWM26729.18.900e-20471.78Pentatricopeptide repeat containining protein [Nan... [more]
EWM26730.18.900e-20471.78Pentatricopeptide repeat containining protein [Nan... [more]
GAX28990.11.000e-1022.16hypothetical protein FisN_1Hh012 [Fistulifera sola... [more]
GAX11622.11.300e-820.67hypothetical protein FisN_1Lh012 [Fistulifera sola... [more]
XP_024518174.12.200e-823.38pentatricopeptide repeat-containing protein At3g57... [more]
XP_024539939.16.300e-823.56pentatricopeptide repeat-containing protein At4g18... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008798NSK008798Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G02350.1NO08G02350.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582617gene_3564Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100001g141gene3827Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G02350.1NO08G02350.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G02350 ID=NO08G02350|Name=NO08G02350|organism=Nannochloropsis oceanica|type=gene|length=2647bp
CCCCCACCCCGGCCACTCTGCAGCTGTACTGGCTGTTATTGCTTGCTCCT
CAACATGATAATAAGACAAGACGCACAGCGAGAGTTGCAGCGGATGCCAC
CTAGAGACAGGAGGAGAAGAGGACGTAGACGGAGCCTCACCCTCCTGACA
TCCGCACGTATAGTACTCGCTTTGTCCGCCTTCCTTCACACGACCTCCGC
ATTTCTCTCCACCCTGCCTTCGCGCGTCGGCAGCAGAGGTACCGACGACG
GCGCCAAACCCCTTTGGCGGGCCGCTGCCATCGCCACATCCTCCACTTCG
TTGTCCTTTTCCAGTGCCGGCGAACGGAGACGGAAGAGCAACACCTCTAC
GTCGTCCTCTGCGAGTGGCCATTCCCCCATCCCCCCTTCTGTAGGAAAGG
CTCAACAGTCGAGAGCAGAACGTGGAAGGCAATTGAACAATGAATTGGCA
CGAATAAAGGTAGCTGGCCCGGTAGTAGACAACGAGCTGTACCTAAAAGC
CTTGCGGTCATGCGCCAAATTGGGTAACGTGAAAATGGCGATGACTCTAC
TGCGGCAGATGCAGCAGCAGTCTCCGCCACCGCGGGTAGCCTACAACCTC
GTGCTGGAGGCGGCAGCCAGGGCCCAGGACCGAAATGTGGCGGTTTGTGT
GTACACAGAGATGCTATGGGGTCGGGACGGGGACGGGGCCGAGGCTATCG
GGGTGAACGTGTTCACATATGGCCAGATGCTTTCCCTGTACGCGAACCTG
GCGGACGGGCCGGCCGCACTGGCCCTCCTGAAGGAAATGGCGGCACAAGG
CGTGGCGGGCAACGCCTTCACCTACACCTCTGCTATCGATGCCTGCGAGC
GGTCGGGGCTGGTGGGTGAGACGGAGCGCTTGTTTCGGGAGATGAAGGAG
CACGGCGTGGCACCCACCGTGGTTACATACAACACCATCATCGCTCGGCG
CGCCGAGCAGGCCGACACCTGGACCGAGGCACTAGACTGGCTGGCAAAAC
TGGAGGCCTCAGGCATCGAGCCCCTGCGTTCATCGTACGCGGCCGCGCTC
AACGCCTGTGAGCGCGCCGAGGAGTGGGAGCTGGTGGTGGAGCTAACGGA
GCGCGCGGGCTCCTTGGCCGACACCACAATGTGGTCGCGCAATCTGGCAG
CGCTGATCAAGCTGATGCGGCACGAGGAGGCGCTGGCCATATTCCGTCGC
CTGCGCGAAGAGCAGACCGTGCCCATGGACGAAGTTCTGTACACGCTGGC
GCTGAAGGCCTGCGCGCTGGCTCGGCGGCCTTACGGCGAAGCACGGGCGC
TGCTGGAGGAAATGCGCGCGGCCGGGCTGGCGCCCAACGTGGTGACATTC
TCGGCAGCCATGGAGGCCTGCAATGGCGACAGGGATTCGGAGGGCATGCC
CAACTGGGAGATGGCTTTAGAGTTGCTGCGTGAAATGCAGGCGCAGGGCG
TGCGGCCCAACACTGTCACCTACTCCACACTCATGGACGTGCTGACCGAA
GCCGGCCAGTGGCAACGTGCGCTGCATTTGTTTATGACACTGGAGAAGGA
CGGGGAGCAGGCGGGCGCCACCAAGTCCGTCTGGCTCTATACGGCCGCTA
TCCGTGCCTGTGCTCAAGGTCGGCAGCTGGAAACCGCGCTAGCCCTGCTG
CGCGAGGTGACGGCGGACCCGGCCCGGCACGGCGTGCCTAATCTTTGCCT
ATATACGGCCGCATTGGACGCCTGCGAGAAGATGGGCAATGGTTCGCTGG
CGCTGCAGCTGCTTGATGAGATGGCCCGCGAGCACAGTATCGTGGTCGAC
GACGTGGCCTGTGGCGTGGTTATCAGCGCTTGCCGCAAGGCGGGGCTGGT
GGGTGACTGCTTACGCCTGCTGGCTTTCATGCTGAACCACAGGCTAGCCC
CAAACCTGGGCGTCTATAACACTGTCATAGGTGCTCTCTGCTCCCAGCCT
AAGTATGTGGACAAAGCCATCGAGGTTCTCTCATTCCTGGTCGCCTCACA
ACGCCCCGGAAACGCCAACATCAGCGGCAGCAGCAGGTCGGCGCGCGCCC
CGCGTCCCAACACACAGAGCTACAGCCAGGTAGTGGACGCGCTGGCCGAC
GCCTTGCGCTGGGACGAGGCGCTGCGGCTGCTACAGGAGATGCGGGATGC
GGGCCACCGGCCCGAGGTCTTGACGTGCGCCAAGGTGGTGGCGGCCTGCG
AGAAGAAGCAGCGCTGGAAGGAGGCGCTGCAGCTGCTGGACGACATGCGC
AAGGACGAGTATTCTTTCTATGAACTCGAGCTGCTGGACCAGGTCTTCAA
AAAGCTTGTGGGTGTGGCCGCGGCAGGCCTTCGGTCCATTTCACGAGGTG
GGGGAGCGACAGAAGGCGGGACCGTGGAAAGCACCGCGGCAGGAACGGGC
GTGGGACGACAAGGCCATGAATTGAAGGAAGTCGAGGAAATCGACGAGTT
AGAAATGCCGCCGTCATCATCTCTGCTAGTGGGAAAGGAGATTGAGACCA
AGGCAAAAGCAAGCGTCCACGTTGCGAGTGAAAGCAGTGACAGATGAAGA
TGCACAGCTGGACACACTGTACTTATCAAATAACAACATTATCACCATTA
CTATGATCATGATCATCAAGAACAACAACAAAAAAAAATAATTAAAT
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protein sequence of NO08G02350.1

>NO08G02350.1-protein ID=NO08G02350.1-protein|Name=NO08G02350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=831bp
MIIRQDAQRELQRMPPRDRRRRGRRRSLTLLTSARIVLALSAFLHTTSAF
LSTLPSRVGSRGTDDGAKPLWRAAAIATSSTSLSFSSAGERRRKSNTSTS
SSASGHSPIPPSVGKAQQSRAERGRQLNNELARIKVAGPVVDNELYLKAL
RSCAKLGNVKMAMTLLRQMQQQSPPPRVAYNLVLEAAARAQDRNVAVCVY
TEMLWGRDGDGAEAIGVNVFTYGQMLSLYANLADGPAALALLKEMAAQGV
AGNAFTYTSAIDACERSGLVGETERLFREMKEHGVAPTVVTYNTIIARRA
EQADTWTEALDWLAKLEASGIEPLRSSYAAALNACERAEEWELVVELTER
AGSLADTTMWSRNLAALIKLMRHEEALAIFRRLREEQTVPMDEVLYTLAL
KACALARRPYGEARALLEEMRAAGLAPNVVTFSAAMEACNGDRDSEGMPN
WEMALELLREMQAQGVRPNTVTYSTLMDVLTEAGQWQRALHLFMTLEKDG
EQAGATKSVWLYTAAIRACAQGRQLETALALLREVTADPARHGVPNLCLY
TAALDACEKMGNGSLALQLLDEMAREHSIVVDDVACGVVISACRKAGLVG
DCLRLLAFMLNHRLAPNLGVYNTVIGALCSQPKYVDKAIEVLSFLVASQR
PGNANISGSSRSARAPRPNTQSYSQVVDALADALRWDEALRLLQEMRDAG
HRPEVLTCAKVVAACEKKQRWKEALQLLDDMRKDEYSFYELELLDQVFKK
LVGVAAAGLRSISRGGGATEGGTVESTAAGTGVGRQGHELKEVEEIDELE
MPPSSSLLVGKEIETKAKASVHVASESSDR*
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Synonyms
Publications