NO08G02210, NO08G02210 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO08G02210
Unique Name	NO08G02210
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1543
Alignment location	chr8:651394..652936 +

Link to JBrowse

Properties


Property Name	Value
Description	Caltractin ICL1c

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr8	genome	chr8:651394..652936 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
PXD016054	2021-01-14
PXD016699	2021-01-08
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
PXD010030	2020-03-16
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005509	calcium ion binding
GO:0005488	binding

Vocabulary: **INTERPRO**
Term	Definition
IPR011992	EF-hand-dom_pair
IPR002048	EF_hand_dom

Homology

[Close]

BLAST of NO08G02210 vs. NCBI_GenBank
Match: OMJ88465.1 (hypothetical protein SteCoe_9594 [Stentor coeruleus] >OMJ90830.1 hypothetical protein SteCoe_6697 [Stentor coeruleus])

HSP 1 Score: 201.8 bits (512), Expect = 1.700e-48
Identity = 103/154 (66.88%), Postives = 126/154 (81.82%), Query Frame = 0

Query:   23 REGLTEEEIEEIREAFNLFDLQGSGTIDVRELKQAMQSLGFDAKNHTIYQMIADMDKDGTGSESNSIDFDGFLHMMTTKMSDKESKEDIEKVFNMFDEQGKGSISFKDLKRVAKELGENMSEAELKEMILRADADQDGEVSFEDFYNIMTRRTF 177
            R GLTE+EIEEI+EAF+LFD  GSGTID  ELK AMQSLGF+AKN TIYQMI+D+DKDG+G    +IDFD FL MMT +MSDK++KEDI KVF +FD+   G I+ K+L+RVAKELGE M++ EL EM+ RAD+D DG+VS EDFYNIMT++ F
Sbjct:   26 RPGLTEDEIEEIKEAFDLFDSDGSGTIDPAELKSAMQSLGFEAKNQTIYQMISDLDKDGSG----AIDFDEFLDMMTARMSDKDTKEDINKVFRLFDDDKTGYITIKNLRRVAKELGETMTDEELMEMVERADSDGDGQVSQEDFYNIMTKKAF 175

[Close]

BLAST of NO08G02210 vs. NCBI_GenBank
Match: PHJ19165.1 (centrin 2 [Cystoisospora suis])

HSP 1 Score: 201.1 bits (510), Expect = 3.000e-48
Identity = 105/166 (63.25%), Postives = 129/166 (77.71%), Query Frame = 0

Query:   11 GGRGAAWGADSSREGLTEEEIEEIREAFNLFDLQGSGTIDVRELKQAMQSLGFDAKNHTIYQMIADMDKDGTGSESNSIDFDGFLHMMTTKMSDKESKEDIEKVFNMFDEQGKGSISFKDLKRVAKELGENMSEAELKEMILRADADQDGEVSFEDFYNIMTRRTF 177
            GG G +      R GLTE+EIEEIREAFNLFD  GSG ID +ELK AMQSLGF+ KN TIYQMIAD+D+DG G     IDF+ FL  +T K+ DKES+E I+K+FN+FD+   G+I+ K+LKRVAKELGE MSE EL+EM+ RAD++ DGE+SFEDFY IMT++TF
Sbjct:   12 GGAGGSRRRIIERPGLTEDEIEEIREAFNLFDTDGSGMIDPKELKAAMQSLGFETKNPTIYQMIADLDRDGGG----PIDFEEFLDAITAKLGDKESREGIQKIFNLFDDDRTGTITMKNLKRVAKELGETMSEDELREMLERADSNGDGEISFEDFYAIMTKKTF 173

[Close]

BLAST of NO08G02210 vs. NCBI_GenBank
Match: PFH38011.1 (centrin 2 [Besnoitia besnoiti])

HSP 1 Score: 200.7 bits (509), Expect = 3.900e-48
Identity = 108/172 (62.79%), Postives = 133/172 (77.33%), Query Frame = 0

Query:   11 GGRGAAWGADSSRE------GLTEEEIEEIREAFNLFDLQGSGTIDVRELKQAMQSLGFDAKNHTIYQMIADMDKDGTGSESNSIDFDGFLHMMTTKMSDKESKEDIEKVFNMFDEQGKGSISFKDLKRVAKELGENMSEAELKEMILRADADQDGEVSFEDFYNIMTRRTF 177
            G RGA+  A SSR       GLTE+E+EEIREAFNLFD  GSG ID +ELK AMQSLGF+ KN TIYQMIAD+D+DG G     IDF+ FL  +T K+ DKES+E I+K+FN+FD+   G+I+ K+LKRVAKELGE MSE EL+EM+ RAD++ DGE+SFEDFY IMT++TF
Sbjct:    5 GIRGASPTATSSRRRVIDRPGLTEDEVEEIREAFNLFDTDGSGMIDPKELKAAMQSLGFETKNPTIYQMIADLDRDGGG----PIDFEEFLDAITAKLGDKESREGIQKIFNLFDDDRTGTITLKNLKRVAKELGETMSEDELREMLERADSNGDGEISFEDFYAIMTKKTF 172

[Close]

BLAST of NO08G02210 vs. NCBI_GenBank
Match: CEL97183.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 198.4 bits (503), Expect = 1.900e-47
Identity = 100/154 (64.94%), Postives = 126/154 (81.82%), Query Frame = 0

Query:   23 REGLTEEEIEEIREAFNLFDLQGSGTIDVRELKQAMQSLGFDAKNHTIYQMIADMDKDGTGSESNSIDFDGFLHMMTTKMSDKESKEDIEKVFNMFDEQGKGSISFKDLKRVAKELGENMSEAELKEMILRADADQDGEVSFEDFYNIMTRRTF 177
            R GLTE+EI+EIREAFNLFD  GSGTID +ELK AMQSLGF+ KN TI+QMIAD+D+DG+G    +IDFD FL  +  K+ DKES++ I+K+F +FDE   G+I+ K+LKRVAKELGE M+E EL+EMI RAD++ DGE+SFEDFY IMT++TF
Sbjct:   14 RPGLTEDEIDEIREAFNLFDTDGSGTIDPKELKAAMQSLGFETKNPTIFQMIADLDRDGSG----AIDFDEFLDAICAKLGDKESRDGIQKIFALFDEDKTGTITIKNLKRVAKELGETMTEEELREMIERADSNGDGEISFEDFYTIMTKKTF 163

[Close]

BLAST of NO08G02210 vs. NCBI_GenBank
Match: XP_023973606.1 (caltractin-like [Physeter catodon])

HSP 1 Score: 198.0 bits (502), Expect = 2.500e-47
Identity = 106/176 (60.23%), Postives = 132/176 (75.00%), Query Frame = 0

Query:    1 MRRSPSAKNQGGRGAAWGADSSREGLTEEEIEEIREAFNLFDLQGSGTIDVRELKQAMQSLGFDAKNHTIYQMIADMDKDGTGSESNSIDFDGFLHMMTTKMSDKESKEDIEKVFNMFDEQGKGSISFKDLKRVAKELGENMSEAELKEMILRADADQDGEVSFEDFYNIMTRRTF 177
            MR S      GGR         R GLTE+E+EEIREAFNLFD  GSG ID +ELK AMQSLGF+ KN TIYQMIAD+D+DG G     IDF+ FL  +T+K+ DKES+E I+K+FN+FD+   G+I+ K+LKRVA+ELGE MSE EL+EM+ RAD++ DGE+SFEDFY IMT++TF
Sbjct:    1 MRGSSPLPGAGGRRRV----IERPGLTEDEVEEIREAFNLFDTDGSGMIDPKELKAAMQSLGFETKNPTIYQMIADLDRDGGG----PIDFEEFLDAITSKLGDKESREGIQKIFNLFDDDRTGTITLKNLKRVARELGETMSEDELREMLERADSNGDGEISFEDFYAIMTKKTF 168

[Close]

BLAST of NO08G02210 vs. NCBI_GenBank
Match: OXB71740.1 (hypothetical protein H355_007869 [Colinus virginianus])

HSP 1 Score: 196.8 bits (499), Expect = 5.600e-47
Identity = 99/154 (64.29%), Postives = 126/154 (81.82%), Query Frame = 0

Query:   23 REGLTEEEIEEIREAFNLFDLQGSGTIDVRELKQAMQSLGFDAKNHTIYQMIADMDKDGTGSESNSIDFDGFLHMMTTKMSDKESKEDIEKVFNMFDEQGKGSISFKDLKRVAKELGENMSEAELKEMILRADADQDGEVSFEDFYNIMTRRTF 177
            R GLTE+E+EEIREAFNLFD  GSG ID +ELK AMQSLGF+ KN TIYQMIAD+++DG G     IDF+ FL  +T+K+ DKES+E I+K+FN+FD+   G+I+ K+LKRVA+ELGE MSE EL+EM+ RAD++ DGE+SFEDFY IMT++TF
Sbjct:   19 RPGLTEDEVEEIREAFNLFDTDGSGMIDPKELKAAMQSLGFETKNPTIYQMIADLNRDGGG----PIDFEEFLDAITSKLGDKESREGIQKIFNLFDDDRTGTITLKNLKRVARELGETMSEDELREMLERADSNGDGEISFEDFYAIMTKKTF 168

[Close]

BLAST of NO08G02210 vs. NCBI_GenBank
Match: XP_018635066.1 (centrin 2 [Toxoplasma gondii ME49] >EPR63420.1 centrin 2 [Toxoplasma gondii GT1] >EPT25169.1 centrin 2 [Toxoplasma gondii ME49] >ESS34482.1 centrin 2 [Toxoplasma gondii VEG] >KFG40632.1 centrin 2 [Toxoplasma gondii GAB2-2007-GAL-DOM2] >KFH11861.1 centrin 2 [Toxoplasma gondii VAND] >CEL78623.1 TPA: caltractin, putative [Toxoplasma gondii VEG] >KYF50189.1 centrin 2 [Toxoplasma gondii ARI] >KYK63988.1 centrin 2 [Toxoplasma gondii TgCatPRC2] >PIM04372.1 centrin 2 [Toxoplasma gondii COUG])

HSP 1 Score: 196.1 bits (497), Expect = 9.500e-47
Identity = 105/171 (61.40%), Postives = 130/171 (76.02%), Query Frame = 0

Query:   13 RGAAWGADSS-------REGLTEEEIEEIREAFNLFDLQGSGTIDVRELKQAMQSLGFDAKNHTIYQMIADMDKDGTGSESNSIDFDGFLHMMTTKMSDKESKEDIEKVFNMFDEQGKGSISFKDLKRVAKELGENMSEAELKEMILRADADQDGEVSFEDFYNIMTRRTF 177
            RGA  GA  +       R GLTE+EIEEIREAFNLFD  GSG ID +ELK AMQSLGF+ KN TIYQMIAD+D+D  G     IDF+ FL  +T K+ DKES+E I+K+F++FD+   G+I+ K+LKRVAKELGE MSE EL+EM+ RAD++ DGE+SFEDFY IMT++TF
Sbjct:    3 RGALRGASPTARRRLVDRPGLTEDEIEEIREAFNLFDTDGSGMIDPKELKAAMQSLGFETKNPTIYQMIADLDRDSGG----PIDFEEFLDAITAKLGDKESREGIQKIFSLFDDDRTGTITLKNLKRVAKELGETMSEDELREMLERADSNGDGEISFEDFYAIMTKKTF 169

[Close]

BLAST of NO08G02210 vs. NCBI_GenBank
Match: XP_008888656.1 (centrin 2 [Hammondia hammondi] >KEP60710.1 centrin 2 [Hammondia hammondi])

HSP 1 Score: 196.1 bits (497), Expect = 9.500e-47
Identity = 105/171 (61.40%), Postives = 130/171 (76.02%), Query Frame = 0

Query:   13 RGAAWGADSS-------REGLTEEEIEEIREAFNLFDLQGSGTIDVRELKQAMQSLGFDAKNHTIYQMIADMDKDGTGSESNSIDFDGFLHMMTTKMSDKESKEDIEKVFNMFDEQGKGSISFKDLKRVAKELGENMSEAELKEMILRADADQDGEVSFEDFYNIMTRRTF 177
            RGA  GA  +       R GLTE+EIEEIREAFNLFD  GSG ID +ELK AMQSLGF+ KN TIYQMIAD+D+D  G     IDF+ FL  +T K+ DKES+E I+K+F++FD+   G+I+ K+LKRVAKELGE MSE EL+EM+ RAD++ DGE+SFEDFY IMT++TF
Sbjct:    3 RGAMRGASPTSRRRLVDRPGLTEDEIEEIREAFNLFDTDGSGMIDPKELKAAMQSLGFETKNPTIYQMIADLDRDSGG----PIDFEEFLDAITAKLGDKESREGIQKIFSLFDDDRTGTITLKNLKRVAKELGETMSEDELREMLERADSNGDGEISFEDFYAIMTKKTF 169

[Close]

BLAST of NO08G02210 vs. NCBI_GenBank
Match: XP_003886219.1 (putative caltractin [Neospora caninum Liverpool] >CBZ56194.1 putative caltractin [Neospora caninum Liverpool] >CEL70956.1 TPA: caltractin, putative [Neospora caninum Liverpool])

HSP 1 Score: 195.7 bits (496), Expect = 1.200e-46
Identity = 100/154 (64.94%), Postives = 124/154 (80.52%), Query Frame = 0

Query:   23 REGLTEEEIEEIREAFNLFDLQGSGTIDVRELKQAMQSLGFDAKNHTIYQMIADMDKDGTGSESNSIDFDGFLHMMTTKMSDKESKEDIEKVFNMFDEQGKGSISFKDLKRVAKELGENMSEAELKEMILRADADQDGEVSFEDFYNIMTRRTF 177
            R GLTE+EIEEIREAFNLFD  GSG ID +ELK AMQSLGF+ KN TIYQMIAD+D+D  G     IDF+ FL  +T K+ DKES+E I+K+F++FD+   G+I+ K+LKRVAKELGE MSE EL+EM+ RAD++ DGE+SFEDFY IMT++TF
Sbjct:   20 RPGLTEDEIEEIREAFNLFDTDGSGMIDPKELKAAMQSLGFETKNPTIYQMIADLDRDSGG----PIDFEEFLDAITAKLGDKESREGIQKIFSLFDDDRTGTITLKNLKRVAKELGETMSEDELREMLERADSNGDGEISFEDFYAIMTKKTF 169

[Close]

BLAST of NO08G02210 vs. NCBI_GenBank
Match: OMJ71551.1 (hypothetical protein SteCoe_30224 [Stentor coeruleus])

HSP 1 Score: 195.7 bits (496), Expect = 1.200e-46
Identity = 103/154 (66.88%), Postives = 124/154 (80.52%), Query Frame = 0

Query:   23 REGLTEEEIEEIREAFNLFDLQGSGTIDVRELKQAMQSLGFDAKNHTIYQMIADMDKDGTGSESNSIDFDGFLHMMTTKMSDKESKEDIEKVFNMFDEQGKGSISFKDLKRVAKELGENMSEAELKEMILRADADQDGEVSFEDFYNIMTRRTF 177
            R GLTE+EIEEI+EAF+LFD  GSGTID  ELK AMQSLGF+AKN TIYQMI+D+DKDG+G    +IDFD FL MMT +MSDK++KEDI KVF +FD+   G I+ K+L+RVAKELGE M++ EL EMI RAD+D DG  S EDFYNIMT++ F
Sbjct:   26 RPGLTEDEIEEIKEAFDLFDSDGSGTIDPAELKSAMQSLGFEAKNQTIYQMISDLDKDGSG----AIDFDEFLDMMTARMSDKDTKEDINKVFRLFDDDKTGYITIKNLRRVAKELGETMTDEELMEMIERADSDGDG-XSTEDFYNIMTKKAF 174

The following BLAST results are available for this feature:

BLAST of NO08G02210 vs. NCBI_GenBank

BLAST of NO08G02210 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
OMJ88465.1	1.700e-48	66.88	hypothetical protein SteCoe_9594 [Stentor coeruleu...	[more]
PHJ19165.1	3.000e-48	63.25	centrin 2 [Cystoisospora suis]	[more]
PFH38011.1	3.900e-48	62.79	centrin 2 [Besnoitia besnoiti]	[more]
CEL97183.1	1.900e-47	64.94	unnamed protein product [Vitrella brassicaformis C...	[more]
XP_023973606.1	2.500e-47	60.23	caltractin-like [Physeter catodon]	[more]
OXB71740.1	5.600e-47	64.29	hypothetical protein H355_007869 [Colinus virginia...	[more]
XP_018635066.1	9.500e-47	61.40	centrin 2 [Toxoplasma gondii ME49] >EPR63420.1 cen...	[more]
XP_008888656.1	9.500e-47	61.40	centrin 2 [Hammondia hammondi] >KEP60710.1 centrin...	[more]
XP_003886219.1	1.200e-46	64.94	putative caltractin [Neospora caninum Liverpool] >...	[more]
OMJ71551.1	1.200e-46	66.88	hypothetical protein SteCoe_30224 [Stentor coerule...	[more]

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Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL109	nonsL109	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR083	ncniR083	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR141	ngnoR141	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO08G02210.1	NO08G02210.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582566	gene_3549	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO08G02210.1	NO08G02210.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO08G02210 ID=NO08G02210|Name=NO08G02210|organism=Nannochloropsis oceanica|type=gene|length=1543bp
TTTGACCCCTCGCTCGTTATATTCGCTAAAGCAAGTGGGCGAGCGCAACA
AACCCGGAACGACCCGGAAGACAACGTTGTTGTGTGTTGCCAAAAAATCG
GAACTGCTCAAGCAGAGCACATGCCCTCATGCGAAACCGTCATACCTTAG
CCATGATCATCAAGACTTTTCTTCACATCGTTAAAATTTGCCTTCCCATC
CTAAACTAAACTTAAAAAACACAGCTCGCCGGCCTCGACGCCCACATAAT
CACCATCATAAAACATCATCAATGgtaagtccatctattcgccctccatc
ccccgccgtacgcgtcaatacatgcacaccaccacacaccacagCGTCGT
AGCCCTTCGGCAAAAAATCAGGGAGGCAGGGGAGCAGCTTGGGGCGCTGA
CTCGAGCCGGGAAGGGTTAACCGAGGAAGAAATCGAGGgtacttcgggat
ggaagggaggggagaaccgattggcttgcctgcagaaataaatgaagcgc
gagccttaagctgaggagagggtgttttgactgaattcaggagggccttt
tgagttcgaacttgtccatacttcggatcggctatgcggtcgtgcctgat
tttcctcccctatctcgccatcccatccagacccatgtactgaacataac
cccgccttactatcttccatgcacagAGATCCGTGAGGCGTTCAACCTGT
TCGATTTGCAAGGAAGTGGGACAATTGATGTGCGGGAGCTTAAGCAGGCT
ATGCAGTCTCTGGGCTTTGACGCCAAGAACCACACCATCTACCAAATGAT
AGCTGACATGGACAAGGATGGGACTGGAAGCGAGAGCAACAGCATTGACT
TTGACGGGTTCCTACACATGATGACGACCAAGATGAGCGACAAGGAAAGC
AAAGAGGATATTGAAAAGGTATTCAACATGTTTGACGAGCAGGGCAAGGG
CTCCATCTCCTTCAAGGACCTAAAGCGCGTCGCCAAGGAGCTGGGAGAGA
ACATGTCGGgtacgtttgcgtgtgaatgtgtgtgcgtacgattcgtttga
ccacttcttaataatcatattagactgtcattatgtataaattaattgga
tctgagagaaagccggtcccttctttcgacccaccaaagcctcctttctt
ccctcttgcctatactcacacaacagAGGCGGAGCTGAAGGAGATGATCC
TACGGGCGGACGCGGACCAAGACGGCGAGGTGTCTTTCGAGGACTTTTAC
AATATCATGACCCGACGAACATTCACTTAATTTTAGCCAAAAGGAAGGGG
AAGGAAGGATGAAAAATGCTTCGTTCTCGGCTCTATTTCCTGACGACGAT
TGAAGGAGGAAAAAGTTAAGCCTGGGAGATAAAAATTGAATAGTCGCGCA
TGCATTCTCCCAAGAGAGAAGCATTGGGGGGGTGTAGCACTTGTGCTGGT
ATGAAGAGGACAATAATGTAGGGTAGTGGCATTTGGAAGAGAGCAAAAAG
ACGAAGGAGTGATCGAAAGCAAGAAAGCCAGCGAAGTCAGTCA

protein sequence of NO08G02210.1

>NO08G02210.1-protein ID=NO08G02210.1-protein|Name=NO08G02210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=178bp
MRRSPSAKNQGGRGAAWGADSSREGLTEEEIEEIREAFNLFDLQGSGTID
VRELKQAMQSLGFDAKNHTIYQMIADMDKDGTGSESNSIDFDGFLHMMTT
KMSDKESKEDIEKVFNMFDEQGKGSISFKDLKRVAKELGENMSEAELKEM
ILRADADQDGEVSFEDFYNIMTRRTFT*

Synonyms

Publications