NO08G02210.1, NO08G02210.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G02210.1
Unique NameNO08G02210.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1068
Alignment locationchr8:651394..652936 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:651394..652936 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G02210.1 vs.
Match: OQR99006.1 (centrin [Achlya hypogyna])

HSP 1 Score: 218.0 bits (554), Expect = 2.300e-53
Identity = 118/171 (69.01%), Postives = 138/171 (80.70%), Query Frame = 0 
Query:    9 NQGG--RGAAWGADSSREGLTEEEIEEIREAFNLFDLQGSGTIDVRELKQAMQSLGFDAKNHTIYQMIADMDKDGTGSESNSIDFDGFLHMMTTKMSDKESKEDIEKVFNMFDEQGKGSISFKDLKRVAKELGENMSEAELKEMILRADADQDGEVSFEDFYNIMTRRTFT 178
            NQGG  RG+       R GL+EEEIEEIREAFNLFD  GSGTID +ELK AMQSLGF+AKN TIYQMI D+DKDG+GS    IDF+ FL MMT KMSDK+S+EDI+KVFN+FD+ G G IS ++LKRVAKELGE MS+AEL EMI RAD DQDGE++ E+FY IMT++TFT
Sbjct:    6 NQGGPKRGSK---TYERPGLSEEEIEEIREAFNLFDTDGSGTIDPKELKAAMQSLGFEAKNQTIYQMIGDIDKDGSGS----IDFEEFLDMMTAKMSDKDSREDIQKVFNLFDDDGTGKISLRNLKRVAKELGETMSDAELLEMIERADTDQDGEINAEEFYAIMTKKTFT 169
The following BLAST results are available for this feature:
BLAST of NO08G02210.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
OQR99006.12.300e-5369.01centrin [Achlya hypogyna][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G02210NO08G02210Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G02210.1NO08G02210.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G02210.1.cds1NO08G02210.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G02210.1.cds2NO08G02210.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G02210.1.cds3NO08G02210.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G02210.1.cds4NO08G02210.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G02210.1 ID=NO08G02210.1|Name=NO08G02210.1|organism=Nannochloropsis oceanica|type=mRNA|length=1068bp
TTTGACCCCTCGCTCGTTATATTCGCTAAAGCAAGTGGGCGAGCGCAACA
AACCCGGAACGACCCGGAAGACAACGTTGTTGTGTGTTGCCAAAAAATCG
GAACTGCTCAAGCAGAGCACATGCCCTCATGCGAAACCGTCATACCTTAG
CCATGATCATCAAGACTTTTCTTCACATCGTTAAAATTTGCCTTCCCATC
CTAAACTAAACTTAAAAAACACAGCTCGCCGGCCTCGACGCCCACATAAT
CACCATCATAAAACATCATCAATGCGTCGTAGCCCTTCGGCAAAAAATCA
GGGAGGCAGGGGAGCAGCTTGGGGCGCTGACTCGAGCCGGGAAGGGTTAA
CCGAGGAAGAAATCGAGGAGATCCGTGAGGCGTTCAACCTGTTCGATTTG
CAAGGAAGTGGGACAATTGATGTGCGGGAGCTTAAGCAGGCTATGCAGTC
TCTGGGCTTTGACGCCAAGAACCACACCATCTACCAAATGATAGCTGACA
TGGACAAGGATGGGACTGGAAGCGAGAGCAACAGCATTGACTTTGACGGG
TTCCTACACATGATGACGACCAAGATGAGCGACAAGGAAAGCAAAGAGGA
TATTGAAAAGGTATTCAACATGTTTGACGAGCAGGGCAAGGGCTCCATCT
CCTTCAAGGACCTAAAGCGCGTCGCCAAGGAGCTGGGAGAGAACATGTCG
GAGGCGGAGCTGAAGGAGATGATCCTACGGGCGGACGCGGACCAAGACGG
CGAGGTGTCTTTCGAGGACTTTTACAATATCATGACCCGACGAACATTCA
CTTAATTTTAGCCAAAAGGAAGGGGAAGGAAGGATGAAAAATGCTTCGTT
CTCGGCTCTATTTCCTGACGACGATTGAAGGAGGAAAAAGTTAAGCCTGG
GAGATAAAAATTGAATAGTCGCGCATGCATTCTCCCAAGAGAGAAGCATT
GGGGGGGTGTAGCACTTGTGCTGGTATGAAGAGGACAATAATGTAGGGTA
GTGGCATTTGGAAGAGAGCAAAAAGACGAAGGAGTGATCGAAAGCAAGAA
AGCCAGCGAAGTCAGTCA
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protein sequence of NO08G02210.1

>NO08G02210.1-protein ID=NO08G02210.1-protein|Name=NO08G02210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=178bp
MRRSPSAKNQGGRGAAWGADSSREGLTEEEIEEIREAFNLFDLQGSGTID
VRELKQAMQSLGFDAKNHTIYQMIADMDKDGTGSESNSIDFDGFLHMMTT
KMSDKESKEDIEKVFNMFDEQGKGSISFKDLKRVAKELGENMSEAELKEM
ILRADADQDGEVSFEDFYNIMTRRTFT*
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mRNA from alignment at chr8:651394..652936+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G02210.1 ID=NO08G02210.1|Name=NO08G02210.1|organism=Nannochloropsis oceanica|type=mRNA|length=1543bp|location=Sequence derived from alignment at chr8:651394..652936+ (Nannochloropsis oceanica)
TTTGACCCCTCGCTCGTTATATTCGCTAAAGCAAGTGGGCGAGCGCAACA
AACCCGGAACGACCCGGAAGACAACGTTGTTGTGTGTTGCCAAAAAATCG
GAACTGCTCAAGCAGAGCACATGCCCTCATGCGAAACCGTCATACCTTAG
CCATGATCATCAAGACTTTTCTTCACATCGTTAAAATTTGCCTTCCCATC
CTAAACTAAACTTAAAAAACACAGCTCGCCGGCCTCGACGCCCACATAAT
CACCATCATAAAACATCATCAATGGTAAGTCCATCTATTCGCCCTCCATC
CCCCGCCGTACGCGTCAATACATGCACACCACCACACACCACAGCGTCGT
AGCCCTTCGGCAAAAAATCAGGGAGGCAGGGGAGCAGCTTGGGGCGCTGA
CTCGAGCCGGGAAGGGTTAACCGAGGAAGAAATCGAGGGTACTTCGGGAT
GGAAGGGAGGGGAGAACCGATTGGCTTGCCTGCAGAAATAAATGAAGCGC
GAGCCTTAAGCTGAGGAGAGGGTGTTTTGACTGAATTCAGGAGGGCCTTT
TGAGTTCGAACTTGTCCATACTTCGGATCGGCTATGCGGTCGTGCCTGAT
TTTCCTCCCCTATCTCGCCATCCCATCCAGACCCATGTACTGAACATAAC
CCCGCCTTACTATCTTCCATGCACAGAGATCCGTGAGGCGTTCAACCTGT
TCGATTTGCAAGGAAGTGGGACAATTGATGTGCGGGAGCTTAAGCAGGCT
ATGCAGTCTCTGGGCTTTGACGCCAAGAACCACACCATCTACCAAATGAT
AGCTGACATGGACAAGGATGGGACTGGAAGCGAGAGCAACAGCATTGACT
TTGACGGGTTCCTACACATGATGACGACCAAGATGAGCGACAAGGAAAGC
AAAGAGGATATTGAAAAGGTATTCAACATGTTTGACGAGCAGGGCAAGGG
CTCCATCTCCTTCAAGGACCTAAAGCGCGTCGCCAAGGAGCTGGGAGAGA
ACATGTCGGGTACGTTTGCGTGTGAATGTGTGTGCGTACGATTCGTTTGA
CCACTTCTTAATAATCATATTAGACTGTCATTATGTATAAATTAATTGGA
TCTGAGAGAAAGCCGGTCCCTTCTTTCGACCCACCAAAGCCTCCTTTCTT
CCCTCTTGCCTATACTCACACAACAGAGGCGGAGCTGAAGGAGATGATCC
TACGGGCGGACGCGGACCAAGACGGCGAGGTGTCTTTCGAGGACTTTTAC
AATATCATGACCCGACGAACATTCACTTAATTTTAGCCAAAAGGAAGGGG
AAGGAAGGATGAAAAATGCTTCGTTCTCGGCTCTATTTCCTGACGACGAT
TGAAGGAGGAAAAAGTTAAGCCTGGGAGATAAAAATTGAATAGTCGCGCA
TGCATTCTCCCAAGAGAGAAGCATTGGGGGGGTGTAGCACTTGTGCTGGT
ATGAAGAGGACAATAATGTAGGGTAGTGGCATTTGGAAGAGAGCAAAAAG
ACGAAGGAGTGATCGAAAGCAAGAAAGCCAGCGAAGTCAGTCA
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Coding sequence (CDS) from alignment at chr8:651394..652936+

>NO08G02210.1 ID=NO08G02210.1|Name=NO08G02210.1|organism=Nannochloropsis oceanica|type=CDS|length=534bp|location=Sequence derived from alignment at chr8:651394..652936+ (Nannochloropsis oceanica)
ATGCGTCGTAGCCCTTCGGCAAAAAATCAGGGAGGCAGGGGAGCAGCTTG
GGGCGCTGACTCGAGCCGGGAAGGGTTAACCGAGGAAGAAATCGAGGAGA
TCCGTGAGGCGTTCAACCTGTTCGATTTGCAAGGAAGTGGGACAATTGAT
GTGCGGGAGCTTAAGCAGGCTATGCAGTCTCTGGGCTTTGACGCCAAGAA
CCACACCATCTACCAAATGATAGCTGACATGGACAAGGATGGGACTGGAA
GCGAGAGCAACAGCATTGACTTTGACGGGTTCCTACACATGATGACGACC
AAGATGAGCGACAAGGAAAGCAAAGAGGATATTGAAAAGGTATTCAACAT
GTTTGACGAGCAGGGCAAGGGCTCCATCTCCTTCAAGGACCTAAAGCGCG
TCGCCAAGGAGCTGGGAGAGAACATGTCGGAGGCGGAGCTGAAGGAGATG
ATCCTACGGGCGGACGCGGACCAAGACGGCGAGGTGTCTTTCGAGGACTT
TTACAATATCATGACCCGACGAACATTCACTTAA
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Synonyms
Publications