|
|
Properties
| Property Name | Value |
|---|
| Description | Unknown protein |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr8 | genome | chr8:638617..642142 - |
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
| GO:0016020 | membrane |
Homology
BLAST of NO08G02170 vs. NCBI_GenBank
Match: EWM26645.1 (hypothetical protein Naga_100001g123 [Nannochloropsis gaditana]) HSP 1 Score: 373.2 bits (957), Expect = 1.000e-99 Identity = 203/379 (53.56%), Postives = 265/379 (69.92%), Query Frame = 0
Query: 15 LLHAG-VGTARGSGAXXXXVYGGTSTDGGG--PDLASTVCHQSSIFHSMGKGSLMGKRKRGTSEILRQTRRHQTYLAFFLFTTLGFILFAALSRSGWALGRIISTSILMPEKVPCPPKMTELGPDAKCEASELVIFTSRINYGLFGDLKYETTSEVSIDTRAKTPGGMTRTWLEKKNTLVSSDIQPSFEHWANNFPEYYDYVRSTQAFVVVSVLATVTSLIFLSLITIARPAPIWARTDTLTTGFYALLLSTICLALSIFAWMGVPLSAFTTECGPSSALPSLNGTGISSRSSTLFDISSXXXXXXXXVDASLCIQLDGRLCLQNCSVNNTVIRGGGMYGLVVFSCLLQCVCLMFWAEFQEEVLRGYDQTPSRRSSAAT 391
L+++G TA G G YGG ST+ G PDLAST HQSSIFH+M KGS++G R +EI+R TRRH+ YLAFFLF T F+L A LSR GW LGRII+TS++MP V CPP + E P+A+C+AS++VIF++RINYGLFGDLKY T+SE S+ T+A+ GG +R ++ +VSS+IQ S++ WA NFPEY DY+ +T++ +VVS L+T LI L +I++ PA A+ DTL+ GFYAL LS +CL + + AWMGVPLSAFTTEC P SALP +NGTG++ D SS ++C+QLDG LC +NCS ++V RGGGMYG+ VFSCLLQCVCL+FWA+ QEE+ DQ+ R+S T
Sbjct: 13 LIYSGNADTASGRGR-----YGGVSTEDNGNPPDLASTFYHQSSIFHTMRKGSIVG-HHRNLTEIMRGTRRHRLYLAFFLFATSAFVLVAMLSRGGWTLGRIITTSVMMPRVVTCPPALAEWEPNAECKASKIVIFSTRINYGLFGDLKYLTSSETSVHTQAEAAGGESRGLKTREKAIVSSNIQSSYDTWAANFPEYMDYIHTTESCLVVSFLSTALCLILLGVISLGLPASGQAKLDTLSAGFYALALSALCLFVGMLAWMGVPLSAFTTECHP-SALPGVNGTGLN-----WADTSS------DFYGGAMCVQLDGGLCSENCSTTSSVNRGGGMYGIAVFSCLLQCVCLVFWAKLQEELSSADDQSRGGRTSFGT 373
The following BLAST results are available for this feature:
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO08G02170 ID=NO08G02170|Name=NO08G02170|organism=Nannochloropsis oceanica|type=gene|length=3526bp
ATAGCGCTAGTGAGTCCTCTTTGTCAATCTTCAGTACATGCAGTCCACGG
CATGGTAAGCCACAGCACACACGGCATTCTAGACTCTGACCGAGGTGTAT
GCCCCTTGCTCTGACTGGGCGGTGAGGCTGTCGGCATCATTATTGGCGAG
CCTCTCCGAAGAGTCCAAACCTCGTTTTTCAACTGGTCGATTTTGCGAAT
GTCAAAGTGAGGGAGGAATGGCTGAATGCAAGCCCTGGTGTGCTGCTCTA
CTCTCGGCTCCCACTGCTCCGCACACTTGCTTACCCTACAGGTGTTTTGC
GAGACGCCCCTCGTGTCCGATCGCGTTTTTTGTATTTCCGCTTTACAAGC
GACAACAGTGTATCGGCTCCCGTGGCACACAGTATTGGTTTGCCGACCAC
AACTCCAATCAGCATCACTAGCGCAAGGTCAAGgtagggatgtctgatag
aagagcattgtgtcaaaaactttagctagaagcccgtcaagatctaaaat
attttcgtctcacccctcaactagTCCATCATCGTACCTGACACACTATT
TCGGAATAGTATTAGCAGCAGAACAGGCGTTTAGAGCATGAGTTGTCACC
CGGGGAATGGAGCAGGCGAGCTAGTGCCCCTGCTACATGCGGGGGTTGGC
ACGGCGAGAGGAAGCGGGGCCGGTGGTGGCGGGGTCTATGGGGGAACGTC
AACCGACGGCGGCGGGCCAGATTTGGCATCGACAGTATGCCATCAAAGTT
CGATTTTTCATTCGATGGGCAAAGGCTCCTTAATGgtgagggttggaaag
attgaggagtaggaattaaagtggatgtgaatctgcaatgttataaattt
aatacgcctccgtcatcatctaaaccatatatgcagGGCAAACGAAAACG
CGGGACCTCAGAGATCCTTCGACAGACGCGTCGTCATCAAACTTATTgta
agtgctaggaagtaaggatatgaggaagatttcaaggtgctctttttctc
ttgacgtgtctgtctgcttgggagcgttcgaagggttcaatatacgaaga
ctactgacggatgccactgactttttttttacaatatcttctcgccgctt
tcagTGGCTTTCTTTTTGTTTACGACTCTGGGCTTCATCCTTTTTGCCGC
ACTCTCGAGAAGCGGGTGGGCTTTAGGTCGCATCATCAGCACCTCTATTC
TTATGCCTGAGAAGGTGCCTTGCCCGCCAAAGATGACTGAACTGGGCCCC
GATGCCAAGTGCGAAGCTTCCGAGCTTGTCATTTTCACAAGTCGGATAAA
TTACGgtacgagcgcactgattcatgcccgtatatgttttactgatatat
tgttcttaaacataaaaaagaaactcacgtacacatttttctctcccgcc
ctccctcttaacccccacagGATTGTTCGGTGACCTGAAATATGAAACAA
CCTCCGAAGTCTCCATTGACACCCGAGCAAAGACCCCGGGTGGGATGACC
CGGACGTGGCTGGAAAAGAAGAACACCCTCGTTTCTAGCGACATCCAACC
CTCCTTCGAGCACTGgtacgtgttttgcgtcaatttttgtctttgtgttg
aggtgtgtttacatatgttcaaacggaggcccatcgctcgattcttttct
tcagggttggcggctaggcagtgcagaaacctgaaagtatactgatacta
aaaccgcagttacgtgcacctataaacttcaccatccccaaaatacacgt
actcatgcagGGCCAATAATTTCCCCGAATATTATGACTATGTTCGCTCA
ACTCAAGCCTTTGTCGTTGTCAGCGTCCTTGCTACCGTGACAAGCTTGAT
CTTTCTCAGCTTGATTACCATAGCGCGTCCCGCCCCTATTTGGgtgagta
ttatgtagggttagggaagtagggggagaggggggaagcacttatttgtc
tctcttttttttgcatgtcacttatccagtgacccgaaattcgaaacatt
ccttcaatcatcaatcaaataaatagGCACGCACAGACACCTTGACTACG
GGTTTTTACGCCCTCCTGCTCTCGACCATCTGCCTTGCCCTTAGCATATT
TGCCTGGATGgtaagtatatctcttttcccttgcttccgctttagctgga
ctcacctctgacacaatcattgactctatatcgttgtgtgtaaacagGGC
GTCCCACTTTCCGCCTTTACGACGGAGTGCGGCCCGTCGTCAGCTTTGCC
ATCTCTCAACGGGACCGGTATCAGCAGCAGAAGCTCCACGCTCTTTGATA
TCAGCAGCAGCAGCAGCAGCAATAGCAGCAACGTCGACGCCTCCCTTTGC
ATCCAACTCGACGGGAGACTGTGCCTGCAGAACTGCTCGGTCAACAACAC
TGTCATCCGCGGGGGAGGGATGTATGGCCTGGTCGTCTTCTCCTGCCTCC
TCCAATGTGTTTGCCTCATGTTTTGGGCCGAATTCCAAGAAGAGGTATTG
CGTGGGTATGACCAGACCCCCAGCAGAAGGAGCAGTGCCGCGACGCCTCC
CGTCATTGAAACGGGCCCGATACTGCCGACGATGATAGTGTCCTAATGTG
TCTCCAAGCACGTACGGTGTTTCATTAATTTTCCTCTTTTTTTTTGAAGT
CTGTCAGCAGGGGGAGAGCTGGGTGTCATTAGATAAGGGATGCCCCTCTT
AAAAGCGGGATTTAAGCATGCCACTGCTTTTCGTTTCAGTTTCCTATCGA
GCTTGACTGAGGATCCATAGAAGGTCGGGGATCTGAGTATTGTGAGTCTG
GTGAGTGTGTCAGCAGGTGAGTCGGCGATGGTTGGCGACGCCATAGTAAT
ATATTAAATTGCAGGAGCCACCAGGCATTGAGTCGAGGTCCACAACAAGC
GATAGGGGGTAAGGGGGATCCATGTCCATGGGGGGTAAGGGGGATCCTGG
GTGATGACTTGGGGTTCGATTGTTTTGATTCGAAGTGCACAATCGCCGAT
CTTTTCGGTGAAAGCGAAGGGGGAAAATCGATTTGATGGATTTGAGCACG
GACCATTCCGTCAGATCGTGCTGATCACAACGATTCCATTCTGAGGTTTC
ATGGAGGGTCAGGGGGACCAGGGGGTTCACCACCTTTCGTCCTTCGACGG
TGATGGCAGGACATCATCCCCACTGGACATATTCAAAAAGACAAAACCCA
CGGACACAAAGTTCGAGGGGACCAGCCGCGCCGCGGCCTCAATATCAGTA
TCATATGTGACTTATACACCCAGAATAATCGCCAAAGAGTCAAGGAAGAA
CGAAGATATTAAAATGCTTGCAAATTTTTGATAGTCCCCGAGAAAAGCGA
CGGGGAAAGGATGCACCTGCTTTTGTGATATCCCGAAAGAGAAATTTTGC
ATGGGATACAACAATAATACGAGTGTTCTCTGGGCAGTCAATATCGAAAT
AAATAAATAAATTCCTAAACTGCAATTAAGCAGGGACCGCCCGCTCGCGA
AGTGAAGTAGAAATTAAGAAGCGTCG back to topprotein sequence of NO08G02170.3 >NO08G02170.3-protein ID=NO08G02170.3-protein|Name=NO08G02170.3|organism=Nannochloropsis oceanica|type=polypeptide|length=407bp
MSCHPGNGAGELVPLLHAGVGTARGSGAGGGGVYGGTSTDGGGPDLASTV
CHQSSIFHSMGKGSLMGKRKRGTSEILRQTRRHQTYLAFFLFTTLGFILF
AALSRSGWALGRIISTSILMPEKVPCPPKMTELGPDAKCEASELVIFTSR
INYGLFGDLKYETTSEVSIDTRAKTPGGMTRTWLEKKNTLVSSDIQPSFE
HWANNFPEYYDYVRSTQAFVVVSVLATVTSLIFLSLITIARPAPIWARTD
TLTTGFYALLLSTICLALSIFAWMGVPLSAFTTECGPSSALPSLNGTGIS
SRSSTLFDISSSSSSNSSNVDASLCIQLDGRLCLQNCSVNNTVIRGGGMY
GLVVFSCLLQCVCLMFWAEFQEEVLRGYDQTPSRRSSAATPPVIETGPIL
PTMIVS* back to topprotein sequence of NO08G02170.2 >NO08G02170.2-protein ID=NO08G02170.2-protein|Name=NO08G02170.2|organism=Nannochloropsis oceanica|type=polypeptide|length=407bp
MSCHPGNGAGELVPLLHAGVGTARGSGAGGGGVYGGTSTDGGGPDLASTV
CHQSSIFHSMGKGSLMGKRKRGTSEILRQTRRHQTYLAFFLFTTLGFILF
AALSRSGWALGRIISTSILMPEKVPCPPKMTELGPDAKCEASELVIFTSR
INYGLFGDLKYETTSEVSIDTRAKTPGGMTRTWLEKKNTLVSSDIQPSFE
HWANNFPEYYDYVRSTQAFVVVSVLATVTSLIFLSLITIARPAPIWARTD
TLTTGFYALLLSTICLALSIFAWMGVPLSAFTTECGPSSALPSLNGTGIS
SRSSTLFDISSSSSSNSSNVDASLCIQLDGRLCLQNCSVNNTVIRGGGMY
GLVVFSCLLQCVCLMFWAEFQEEVLRGYDQTPSRRSSAATPPVIETGPIL
PTMIVS* back to topprotein sequence of NO08G02170.1 >NO08G02170.1-protein ID=NO08G02170.1-protein|Name=NO08G02170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=407bp
MSCHPGNGAGELVPLLHAGVGTARGSGAGGGGVYGGTSTDGGGPDLASTV
CHQSSIFHSMGKGSLMGKRKRGTSEILRQTRRHQTYLAFFLFTTLGFILF
AALSRSGWALGRIISTSILMPEKVPCPPKMTELGPDAKCEASELVIFTSR
INYGLFGDLKYETTSEVSIDTRAKTPGGMTRTWLEKKNTLVSSDIQPSFE
HWANNFPEYYDYVRSTQAFVVVSVLATVTSLIFLSLITIARPAPIWARTD
TLTTGFYALLLSTICLALSIFAWMGVPLSAFTTECGPSSALPSLNGTGIS
SRSSTLFDISSSSSSNSSNVDASLCIQLDGRLCLQNCSVNNTVIRGGGMY
GLVVFSCLLQCVCLMFWAEFQEEVLRGYDQTPSRRSSAATPPVIETGPIL
PTMIVS* back to top
|