NO08G02140, NO08G02140 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO08G02140 vs. NCBI_GenBank
Match: AJF20647.1 (ras-related protein, partial [Phytophthora nicotianae] >AJF20649.1 ras-related protein, partial [Phytophthora nicotianae] >AJF20651.1 ras-related protein, partial [Phytophthora nicotianae] >AJF20652.1 ras-related protein, partial [Phytophthora nicotianae]) HSP 1 Score: 320.1 bits (819), Expect = 5.000e-84 Identity = 166/194 (85.57%), Postives = 173/194 (89.18%), Query Frame = 0 Query: 6 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELEGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEINRYASENVNKLLVGNKSDLEPKRVVSTEAAKEFADSLGIAFLETSAKNSTNVEKAFLTMASQIKARMKTQPVGPKTGGTKLTPSTAVGGPGAS 200 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL+GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEI+RYA ENVNKLLVGNKSDL KRVVST+AAKEFA+SLGI FLETSAKN+ NVEKAF+ MA+QIK RM PV PK G KLTP V G S Sbjct: 1 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEIDRYACENVNKLLVGNKSDLTAKRVVSTDAAKEFAESLGIEFLETSAKNAANVEKAFMMMAAQIKKRMANAPVAPK-AGVKLTPGQQVPSNGGS 193
BLAST of NO08G02140 vs. NCBI_GenBank
Match: XP_008872832.1 (Ras-like GTP-binding protein YPT1 [Aphanomyces invadans] >ETV98635.1 Ras-like GTP-binding protein YPT1 [Aphanomyces invadans]) HSP 1 Score: 319.7 bits (818), Expect = 6.600e-84 Identity = 168/203 (82.76%), Postives = 175/203 (86.21%), Query Frame = 0 Query: 1 MNAEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELEGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEINRYASENVNKLLVGNKSDLEPKRVVSTEAAKEFADSLGIAFLETSAKNSTNVEKAFLTMASQIKARMKTQPVGPKTGGTKLTPSTAVGGPGASSGCC 204 MN EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL+GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEI+RYA ENVNKLLVGNKSDL KRVVST+AAKEFA+SLGI FLETSAKN+ NVEKAF+ MA+QIK RM PV K L P VG S CC Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEIDRYACENVNKLLVGNKSDLTAKRVVSTDAAKEFAESLGIEFLETSAKNAANVEKAFMMMAAQIKKRMANAPVVSKP-AISLGPGKDVG--SKSGSCC 200
BLAST of NO08G02140 vs. NCBI_GenBank
Match: PNH12912.1 (GTP-binding protein yptV1 [Tetrabaena socialis]) HSP 1 Score: 319.7 bits (818), Expect = 6.600e-84 Identity = 162/203 (79.80%), Postives = 176/203 (86.70%), Query Frame = 0 Query: 1 MNAEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELEGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEINRYASENVNKLLVGNKSDLEPKRVVSTEAAKEFADSLGIAFLETSAKNSTNVEKAFLTMASQIKARMKTQPVGPKTGGTKLTPSTAVGGPGASSGCC 204 MN EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRT+EL+GK IKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWL EI+RYASENVNKLLVGNKSDL K+VV +AAK FAD +GI FLETSAKN+TNVE+AF+TMA++IK RM +QP PK GG + P+ SS CC Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLSEIDRYASENVNKLLVGNKSDLTAKKVVDYQAAKAFADEIGIPFLETSAKNATNVEQAFMTMAAEIKNRMASQPAPPKPGGPVVRPTEGKPINSKSSSCC 203
BLAST of NO08G02140 vs. NCBI_GenBank
Match: XP_002290315.1 (ypt1-like rab-type small G protein [Thalassiosira pseudonana CCMP1335] >EED92067.1 ypt1-like rab-type small G protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 318.9 bits (816), Expect = 1.100e-83 Identity = 162/177 (91.53%), Postives = 165/177 (93.22%), Query Frame = 0 Query: 1 MNAEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELEGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEINRYASENVNKLLVGNKSDLEPKRVVSTEAAKEFADSLGIAFLETSAKNSTNVEKAFLTMASQIKARMKTQP 178 MN EYDYLFKLLLIGDSGVGKS LLLRFADDTYTESYISTIGVDFKIRTIEL+GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTD ESFNNVKQWLHEI+RYA ENVNKLLVGNK DLE KRVVSTE KEFAD LGI FLETSAK STNVE+AFLTMASQIKARMK QP Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSSLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDNESFNNVKQWLHEIDRYACENVNKLLVGNKCDLEGKRVVSTEQGKEFADGLGIEFLETSAKTSTNVEQAFLTMASQIKARMKNQP 177
BLAST of NO08G02140 vs. NCBI_GenBank
Match: AJF20648.1 (ras-related protein, partial [Phytophthora nicotianae]) HSP 1 Score: 318.9 bits (816), Expect = 1.100e-83 Identity = 165/194 (85.05%), Postives = 173/194 (89.18%), Query Frame = 0 Query: 6 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELEGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEINRYASENVNKLLVGNKSDLEPKRVVSTEAAKEFADSLGIAFLETSAKNSTNVEKAFLTMASQIKARMKTQPVGPKTGGTKLTPSTAVGGPGAS 200 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL+GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEI+RYA ENVNKLLVGNKSDL KRVVST+AAKEFA+SLGI FLETSA+N+ NVEKAF+ MA+QIK RM PV PK G KLTP V G S Sbjct: 1 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEIDRYACENVNKLLVGNKSDLTAKRVVSTDAAKEFAESLGIEFLETSARNAANVEKAFMMMAAQIKKRMANAPVAPK-AGVKLTPGQQVPSNGGS 193
BLAST of NO08G02140 vs. NCBI_GenBank
Match: KFM74897.1 (Ras-related protein Rab-1A, partial [Stegodyphus mimosarum]) HSP 1 Score: 317.8 bits (813), Expect = 2.500e-83 Identity = 165/205 (80.49%), Postives = 175/205 (85.37%), Query Frame = 0 Query: 1 MNAEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELEGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEINRYASENVNKLLVGNKSDLEPKRVVSTEAAKEFADSLGIAFLETSAKNSTNVEKAFLTMASQIKARM--KTQPVGPKTGGTKLTPSTAVGGPGASSGCC 204 MN EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELEGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWL EI+RYASENVN+LLVGNK D+ PK+VV AKEFAD LGI FLETSAKN+TNVE+AF+TMA++IK RM T G K+ PST V P S GCC Sbjct: 4 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELEGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNRLLVGNKCDMTPKKVVDYVTAKEFADQLGIPFLETSAKNATNVEQAFMTMAAEIKRRMGPPTSAADASRQGEKINPSTPVKAP--SGGCC 206
BLAST of NO08G02140 vs. NCBI_GenBank
Match: XP_020618942.1 (ras-related protein Rab-1A [Orbicella faveolata] >XP_020618943.1 ras-related protein Rab-1A [Orbicella faveolata]) HSP 1 Score: 317.4 bits (812), Expect = 3.300e-83 Identity = 164/203 (80.79%), Postives = 174/203 (85.71%), Query Frame = 0 Query: 1 MNAEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELEGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEINRYASENVNKLLVGNKSDLEPKRVVSTEAAKEFADSLGIAFLETSAKNSTNVEKAFLTMASQIKARMKTQPVGPKTGGTKLTPSTAVGGPGASSGCC 204 MN EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL+GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWL EI+RYA ENVNKLLVGNKSDL K+VV AKE+ADSLGI FLETSAKN+TNVE+AF+TMA++IK RM P P T K+ ST V G GCC Sbjct: 4 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYACENVNKLLVGNKSDLTTKKVVDFTTAKEYADSLGIPFLETSAKNATNVEQAFMTMAAEIKNRMGPAPAQPGTSNVKINSSTPVKPSG--GGCC 204
BLAST of NO08G02140 vs. NCBI_GenBank
Match: AJF20650.1 (ras-related protein, partial [Phytophthora nicotianae]) HSP 1 Score: 317.0 bits (811), Expect = 4.300e-83 Identity = 164/194 (84.54%), Postives = 173/194 (89.18%), Query Frame = 0 Query: 6 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELEGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEINRYASENVNKLLVGNKSDLEPKRVVSTEAAKEFADSLGIAFLETSAKNSTNVEKAFLTMASQIKARMKTQPVGPKTGGTKLTPSTAVGGPGAS 200 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL+GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEI+RYA ENVNKLLVGNKSDL KRVVST+AA+EFA+SLGI FLETSAKN+ NVEKAF+ MA+QIK RM PV P+ G KLTP V G S Sbjct: 1 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEIDRYACENVNKLLVGNKSDLTAKRVVSTDAAQEFAESLGIEFLETSAKNAANVEKAFMMMAAQIKKRMANAPVAPR-AGVKLTPGQHVPSNGGS 193
BLAST of NO08G02140 vs. NCBI_GenBank
Match: XP_004076945.1 (ras-related protein ORAB-1 [Oryzias latipes]) HSP 1 Score: 316.6 bits (810), Expect = 5.600e-83 Identity = 166/204 (81.37%), Postives = 177/204 (86.76%), Query Frame = 0 Query: 1 MNAEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELEGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEINRYASENVNKLLVGNKSDLEPKRVVSTEAAKEFADSLGIAFLETSAKNSTNVEKAFLTMASQIKARM-KTQPVGPKTGGTKLTPSTAVGGPGASSGCC 204 MN EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL+GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWL EI+RYASENVNKLLVGNK DL K+VV AKEFADSLGI FLETSAKN+TNVE+AF+TMA++IK RM VG + KLTP T+V +S GCC Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGATVGGEKPNVKLTPGTSV--KPSSGGCC 202
BLAST of NO08G02140 vs. NCBI_GenBank
Match: XP_001703135.1 (small rab-related GTPase [Chlamydomonas reinhardtii] >Q39571.1 RecName: Full=GTP-binding protein YPTC1 >AAA82727.1 YptC1 [Chlamydomonas reinhardtii] >ABB46195.1 YptC1 [Chlamydomonas incerta] >PNW75798.1 hypothetical protein CHLRE_12g560150v5 [Chlamydomonas reinhardtii]) HSP 1 Score: 316.2 bits (809), Expect = 7.300e-83 Identity = 160/203 (78.82%), Postives = 174/203 (85.71%), Query Frame = 0 Query: 1 MNAEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELEGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEINRYASENVNKLLVGNKSDLEPKRVVSTEAAKEFADSLGIAFLETSAKNSTNVEKAFLTMASQIKARMKTQPVGPKTGGTKLTPSTAVGGPGASSGCC 204 MN EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRT+EL+GK IKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWL+EI+RYASENVNKLLVGNKSDL K+VV AK FAD +GI FLETSAKN+TNVE+AF+TMA++IK RM +QP+ K GG + P SS CC Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKSDLTSKKVVEYSVAKAFADEIGIPFLETSAKNATNVEQAFMTMAAEIKNRMASQPIPTKAGGPVVRPQEGKPINSKSSSCC 203 The following BLAST results are available for this feature:
BLAST of NO08G02140 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO08G02140 ID=NO08G02140|Name=NO08G02140|organism=Nannochloropsis oceanica|type=gene|length=1292bpback to top protein sequence of NO08G02140.1 >NO08G02140.1-protein ID=NO08G02140.1-protein|Name=NO08G02140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=204bpback to top Synonyms
Publications
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