NO08G02140.1, NO08G02140.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G02140.1
Unique NameNO08G02140.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length612
Alignment locationchr8:629782..631073 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:629782..631073 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G02140.1 vs.
Match: EWM26593.1 (rab family gtpase [Nannochloropsis gaditana])

HSP 1 Score: 396.0 bits (1016), Expect = 7.200e-107
Identity = 201/203 (99.01%), Postives = 201/203 (99.01%), Query Frame = 0 
Query:    1 MNAEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELEGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEINRYASENVNKLLVGNKSDLEPKRVVSTEAAKEFADSLGIAFLETSAKNSTNVEKAFLTMASQIKARMKTQPVGPKTGGTKLTPSTAVGGPGASSGCC 204
            MNAEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELEGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEINRYASENVNKLLVGNKSDLEPKRVVSTE AKEFADSLGIAFLETSAKNSTNVEKAFLTMASQIKARMKTQPVGPKTGGTKLT STAVGGPGASSGCC
Sbjct:    1 MNAEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELEGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEINRYASENVNKLLVGNKSDLEPKRVVSTETAKEFADSLGIAFLETSAKNSTNVEKAFLTMASQIKARMKTQPVGPKTGGTKLTASTAVGGPGASSGCC 203
The following BLAST results are available for this feature:
BLAST of NO08G02140.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26593.17.200e-10799.01rab family gtpase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G02140NO08G02140Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G02140.1NO08G02140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G02140.1.cds1NO08G02140.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G02140.1.cds2NO08G02140.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G02140.1.cds3NO08G02140.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G02140.1.cds4NO08G02140.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G02140.1.cds5NO08G02140.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G02140.1 ID=NO08G02140.1|Name=NO08G02140.1|organism=Nannochloropsis oceanica|type=mRNA|length=612bp
ATGAACGCGGAATACGACTATCTCTTCAAGCTCCTGCTGATTGGAGACTC
AGGTGTAGGAAAGTCCTGTTTGCTGTTGCGCTTTGCGGACGACACATACA
CAGAAAGCTACATTTCCACCATCGGTGTCGATTTCAAAATCCGCACCATT
GAGCTGGAGGGGAAGACTATTAAGTTGCAGATTTGGGATACGGCCGGGCA
GGAGCGTTTCCGCACCATCACTTCCTCCTACTACAGAGGCGCACACGGCA
TCATCGTGGTCTACGATGTGACTGACCAGGAGTCATTCAACAACGTGAAG
CAGTGGCTCCACGAGATTAATCGCTACGCCTCCGAGAATGTCAACAAGCT
CCTCGTCGGCAACAAGAGCGATCTGGAACCCAAGCGCGTGGTCTCCACGG
AAGCCGCCAAGGAATTTGCTGACTCCTTAGGGATCGCCTTCCTTGAGACC
TCCGCCAAAAACTCAACCAATGTCGAAAAGGCCTTCCTGACCATGGCCTC
TCAAATCAAAGCACGGATGAAGACCCAACCGGTGGGCCCCAAAACGGGGG
GGACAAAGCTGACGCCCTCCACAGCGGTGGGCGGGCCGGGTGCGTCGTCG
GGGTGCTGCTAG
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protein sequence of NO08G02140.1

>NO08G02140.1-protein ID=NO08G02140.1-protein|Name=NO08G02140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=204bp
MNAEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTI
ELEGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVK
QWLHEINRYASENVNKLLVGNKSDLEPKRVVSTEAAKEFADSLGIAFLET
SAKNSTNVEKAFLTMASQIKARMKTQPVGPKTGGTKLTPSTAVGGPGASS
GCC*
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mRNA from alignment at chr8:629782..631073+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G02140.1 ID=NO08G02140.1|Name=NO08G02140.1|organism=Nannochloropsis oceanica|type=mRNA|length=1292bp|location=Sequence derived from alignment at chr8:629782..631073+ (Nannochloropsis oceanica)
ATGAACGCGGAATAGTAAGTGCATTGCTTGACCCCTACTTCTTCCCGCCC
GTTCTTCGAGACACCTACTCATCGCCCCCTTTTTCTTTTCTCATTACAGC
GACTATCTCTTCAAGCTCCTGCTGATTGGAGACTCAGGTGTAGGAAAGTC
CTGTTTGCTGTTGCGCTTTGCGGACGACACATACACAGAAAGCTACATTT
CCACCATCGGTGTCGATTTCGTGAGTGCGGGGAAGGGGTTGGGTGTTTGG
GGTGGATGGGGTAGGACAAGCTTGTTCAAATTGTTGACATAGCATGCTCC
ATAAGATGCTTCGTGAAGACGATTGAAGTGTTTGCCTGGCCACAACCGGC
TTGCCTCGGTTTTATGTATCGGGGTGGATCATGTGCCGTTGTGCTTCAAG
CTCTTCGTCACACCTTCTTTCTCATGCCTTTGTATCTCTCCACCTTTACT
CTTTTTGCAGAAAATCCGCACCATTGAGCTGGAGGGGAAGACTATTAAGT
TGCAGATTGTACGTCCAAGGGGGGTTGGGGGTGGGAGGTCTGAAAAGGGA
GAAGGGAGATTTGGAAGGAAGTGTGTTTGTTTAATATACGATGATTTGTC
TCCATGCGCTTACTTTAAATAAATCTTATCTTCAAAATCATAAGCTGCAC
ATAGTAACCCCTCTTACTTTCTCTTACCCTCTCCTGCACTCATTGCTCCT
CCCTTTTCTCTTACTCCTGCTTTTTAATCAGTGGGATACGGCCGGGCAGG
AGCGTTTCCGCACCATCACTTCCTCCTACTACAGAGGCGCACACGGCATC
ATCGTGGTCTACGATGTGACTGACCAGGTAATATACAAATATAAAATTTA
AAGAAGATTAGACAAAGAAGCGTGCAGTTTTGTGTGGTACTGGTGCTTAC
ATCTATTGTCTCCCTGCCTCCATCCTTCCCCCCTTTCCCCCCCATGCGCC
TGTGCGTAGGAGTCATTCAACAACGTGAAGCAGTGGCTCCACGAGATTAA
TCGCTACGCCTCCGAGAATGTCAACAAGCTCCTCGTCGGCAACAAGAGCG
ATCTGGAACCCAAGCGCGTGGTCTCCACGGAAGCCGCCAAGGAATTTGCT
GACTCCTTAGGGATCGCCTTCCTTGAGACCTCCGCCAAAAACTCAACCAA
TGTCGAAAAGGCCTTCCTGACCATGGCCTCTCAAATCAAAGCACGGATGA
AGACCCAACCGGTGGGCCCCAAAACGGGGGGGACAAAGCTGACGCCCTCC
ACAGCGGTGGGCGGGCCGGGTGCGTCGTCGGGGTGCTGCTAG
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Coding sequence (CDS) from alignment at chr8:629782..631073+

>NO08G02140.1 ID=NO08G02140.1|Name=NO08G02140.1|organism=Nannochloropsis oceanica|type=CDS|length=612bp|location=Sequence derived from alignment at chr8:629782..631073+ (Nannochloropsis oceanica)
ATGAACGCGGAATACGACTATCTCTTCAAGCTCCTGCTGATTGGAGACTC
AGGTGTAGGAAAGTCCTGTTTGCTGTTGCGCTTTGCGGACGACACATACA
CAGAAAGCTACATTTCCACCATCGGTGTCGATTTCAAAATCCGCACCATT
GAGCTGGAGGGGAAGACTATTAAGTTGCAGATTTGGGATACGGCCGGGCA
GGAGCGTTTCCGCACCATCACTTCCTCCTACTACAGAGGCGCACACGGCA
TCATCGTGGTCTACGATGTGACTGACCAGGAGTCATTCAACAACGTGAAG
CAGTGGCTCCACGAGATTAATCGCTACGCCTCCGAGAATGTCAACAAGCT
CCTCGTCGGCAACAAGAGCGATCTGGAACCCAAGCGCGTGGTCTCCACGG
AAGCCGCCAAGGAATTTGCTGACTCCTTAGGGATCGCCTTCCTTGAGACC
TCCGCCAAAAACTCAACCAATGTCGAAAAGGCCTTCCTGACCATGGCCTC
TCAAATCAAAGCACGGATGAAGACCCAACCGGTGGGCCCCAAAACGGGGG
GGACAAAGCTGACGCCCTCCACAGCGGTGGGCGGGCCGGGTGCGTCGTCG
GGGTGCTGCTAG
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Synonyms
Publications