NO08G01500, NO08G01500 (gene) Nannochloropsis oceanica

Overview
NameNO08G01500
Unique NameNO08G01500
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4064
Alignment locationchr8:470409..474472 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:470409..474472 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO08G01500 vs. NCBI_GenBank
Match: EWM26605.1 (hypothetical protein Naga_100001g53 [Nannochloropsis gaditana])

HSP 1 Score: 451.4 bits (1160), Expect = 9.400e-123
Identity = 367/1094 (33.55%), Postives = 518/1094 (47.35%), Query Frame = 0 
Query:   45 PTSSMAFVQAARTIRDYLHTLEKDKQ-----AEVNHLSHQERSYSLFLLLSQQLRDLTVASTSTCHSPAPSASPGRAASPPPWSFCYKESRGVQVETALTLLLLWVRL--VKRHP--SPDEQALLCLTMDCLASLVRHDRIFQYLIIRLWNQRSDGTRSSIPGVSLQTFCLETFVDW------RRGPAGRVENEACSGKNYSKVPVTSSQLASLLRLWDGLAARQPLEVQVENYPMLTDCLLHPIFTADSTPVPLSPTRRERTKTPAIMTMERKKEKLKRRGGVKRRSGCARGKGASPHVAPGALRDEEXXXXXXXXXXXXXXXXXXXXXXXXXDGIPDRLTMNTNGYQDNEEE-----------EDPNLLLLPSLHLLAHAARCSPSFRLFLKALDYQEEHLIFDALLSLVVSAQSQPSTTPLMALATLGTLSRLIAGDAHFESRVFDRGNVRETTKLIFPCLLSFTKDVGWEEGERARAAADLWGDFLSSPLVLGLLEEEDERQEGEGLPFFLANAVVALG-DIKDGREEG--GENIEALLRALRVVCEESPIGQSLLTRSVLPLVDGNEEEGCEGGEHSFHLTKLAELALSHHVPTAMESLALLQQLFVGACGEKSPQLWAALTGVLTSXXXXXXXXXXXXXXXXXXXXRSRAAPTS-----ASIQLSRSPLRRHRLQAVAAATGGANAGARVCAPSLLNLLVDRL-HAL---ADEVEVCCGGSGLEGLEIGSRGLNEAVFLELEWSLRPVMSMLSWMATTAFCHAPSLPYEVD---------------LRKEIALRLDARAVSVIVLGVAHVQVWQDEFKKMTVVHNPMSSTESFGLESNCLSQVTLMEKVRWCLSSMYPLERFELVLRGCRLMLLVGXXXXXXXXXXXXXXXXXEWTKGCPGRSVSNERPRHRHWLSIALNSSPVISILAAALHQGTDRELVSQTLSFLTDLKNMNNNASRQSEGDVEEGPEWSGLMDGIFRRNQAVHGCLQMFEKEMTDAANANGKLIMELRDNIILVEEAEGERVALQAAHDQEMERVGQDWREEVLKMREAAKAERSKDKAERAEIISDREGWQARAQAAETELAQ 1086
            P SSMA  QA RTIRDYL  + K        A    L  ++       LL  QL DLT +S  T   P    S GRA     W+F YKE RGVQ E A  LL LWV L    RHP     +Q LL  TMDCL+ L+R +  F++L+ R+W ++S G R S+P VS+Q FCL+T+  W      RRG +   ++           P+  S LASLL  W  LA +Q L+++   Y +L  CL+ P++ A ++P PLSP RR  +K  A  T+   +     R                                                     DG P        G Q  EE+           EDPN+LLLPS+HLLAHAAR SPSFR FL+A D+ EEHL+ D+LLSLVVSAQ +PS T  M LATLG LSRL+AG +  E +VFDR NV+E+T++I+ CLL           +   AA D+W D L+SP V+ +LE      EG+GLP F+  A+  +G  ++  RE+G     IEAL+RALRV+ + S +G+    R V+  +    E   E G     L  L  +ALS H   A ++ + L+++      E+    W  L+ VL +                     S   P S      +I  S  P    R Q  +  + G   G         +LLVDRL HAL   A+E EVCC G   EGL       +    LELEW LR ++S   W+A     +AP+LP   D               L +E+  R+ AR +  IV+  AH   + DE++   +           G++S+  +Q  L+      + S   +   E+V+ GCRL++ +                   W+     R+   E      W  I   S  + ++LAAALHQG DR L+S  +  L  ++     A +  +G   +G EW  ++D + R+N       ++ +KE+ +       L  +L+      E AE +R ALQA HD+E+E VGQDWREEVL +REAA+   ++  +E    +++ + W+A+A+ AE  L Q
Sbjct:    8 PVSSMALGQATRTIRDYLGAIGKGATGSWDCAHPLGLGLEDGRNQFSDLLLAQLLDLTSSSNLTEQVP----SSGRA-----WTFAYKECRGVQAEAASALLSLWVTLEATTRHPCTPAHQQILLRGTMDCLSGLIRGNPSFRHLLFRVWQEKSRGCRPSVPCVSMQMFCLQTYAQWSSVGVPRRGASNFPDHH----------PLPRSLLASLLHFWSLLAQQQLLQIEAAEYRLLYSCLVGPVYRAAASPAPLSPVRRRGSKAKATTTLRNMEHDENGRA----------------------------------------------------DGDPSEHDREKRGGQAGEEDGDVVPPPAGNKEDPNVLLLPSMHLLAHAARGSPSFRSFLQASDHHEEHLLLDSLLSLVVSAQREPSGTQDMVLATLGMLSRLVAGKSGMEHKVFDRKNVQESTEMIYSCLLPPNGTGALGSEDVLSAAVDVWSDLLASPWVVSILE------EGDGLPSFVTRALTTIGCMVEQAREDGAFSGRIEALIRALRVMFQGSSVGR----RCVVEYLFAKREN--ESGATPC-LVCLVRVALSRHTAAAAQAASFLERVMSNDPDEEVDGRWRVLSLVLLT---PVREACEQPGSRTCRAKSSHLPPESLLVCQENIPRSGKPDVDARHQNASGPSSGTLTG---------DLLVDRLAHALQTVAEEAEVCCEGGIAEGLTAKRPSFHVTGLLELEWHLRHLLSFAWWLA-----NAPTLPLAPDDSHASSTTRSTAPGVLGRELVRRISARVLGCIVVAWAHT-CFVDEWEGSDLASAQNGRNRGAGVQSS-QAQTRLLPPS--LVQSPLAVGSLEVVVIGCRLLVTI--------VNGEKEGALQPWSL---NRTAFAEACDPWRWPYILTTSPQISNVLAAALHQGLDRSLLSHLMGLLASIQ---AEAGQLGDGG-GDGLEWRVIVDSLVRQNHRTRLSSRLAKKEVAELQMECATLRRDLKAKTREAEMAESQRAALQAKHDREIESVGQDWREEVLSLREAAEIREAEQASELKACVTENDLWEAKAREAEKRLDQ 981
The following BLAST results are available for this feature:
BLAST of NO08G01500 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26605.19.400e-12333.55hypothetical protein Naga_100001g53 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008898NSK008898Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G01500.1NO08G01500.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582284gene_3477Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100001g53gene3906Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G01500.1NO08G01500.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G01500 ID=NO08G01500|Name=NO08G01500|organism=Nannochloropsis oceanica|type=gene|length=4064bp
ATGACGCTCATTGCCACCTCCCCTTCTTCTTCTGACAGGTATGCGGCATC
CGTTCCTGTTCCCTACAACCTCAACGCGTCCAAGTCACAGTCTATCATCG
TCACTCGCCAAAACACTTCAAAAGTCATGACGCCAACTTCGTCCATGGCC
TTTGTGCAGGCTGCGCGCACTATCCGTGACTACCTACACACGCTCGAGAA
GGACAAGCAAGCCGAGGTCAACCACCTGTCCCACCAAGAACGCAGCTACT
CGCTTTTTCTTCTCCTATCCCAACAGCTTCGTGATTTGACAGTGGCGTCA
ACATCCACTTGCCACTCCCCAGCGCCCTCAGCGTCCCCCGGAAGAGCTGC
ATCGCCGCCTCCATGGTCCTTTTGCTATAAGGAAAGCCGAGGCGTACAGG
TTGAGACAGCCTTAACCTTGCTCTTGCTATGGGTCAGGCTCGTCAAACGT
CACCCCTCTCCCGACGAGCAGGCATTGCTCTGCCTTACGATGGACTGCCT
GGCAAGCCTCGTCCGCCACGACCGAATCTTCCAATATTTGATTATACGGT
TGTGGAACCAGAGGAGCGATGGGACAAGGTCGTCTATTCCTGGCGTCTCC
CTGCAAACTTTTTGTCTGGAGACATTCGTTGATTGGCGTCGAGGCCCTGC
AGGGAGAGTCGAAAACGAAGCATGTTCTGGTAAAAACTACAGCAAAGTCC
CCGTCACGTCTTCTCAGCTTGCCTCTTTGTTGCGGCTTTGGGACGGGTTG
GCAGCGCGGCAGCCATTGGAAGTGCAAGTGGAGAACTACCCTATGCTGAC
CGATTGCTTGCTTCATCCTATTTTCACTGCAGACTCTACTCCGGTTCCTC
TCTCTCCTACTCGCCGGGAGAGGACGAAAACACCGGCAATAATGACGATG
GAGAGAAAAAAAGAAAAGTTGAAAAGAAGAGGAGGGGTGAAGAGGAGGAG
TGGCTGTGCGAGAGGTAAGGGGGCAAGTCCACATGTTGCTCCGGGTGCGT
TGCGGGACGAGGAGGAGGAGGAGGAGGCGGGGAGAGAAGTGAAAGAAGAG
GAGGATGAGGAGGGAGAGGTGGAAGGAAGAGAAGAAAGAGACGGCATTCC
TGACCGCCTCACCATGAACACCAACGGGTACCAGGACAATGAGGAGGAAG
AAGATCCTAATCTCCTCCTCCTCCCCAGCCTTCACCTTCTGGCACACGCC
GCCCGTTGCTCCCCCTCCTTCCGCCTTTTCCTCAAGGCCCTAGACTACCA
AGAAGAGCATCTCATCTTTGACGCCCTCCTATCCCTCGTCGTCTCCGCTC
AGTCCCAGCCAAGTACTACCCCTCTGATGGCGTTAGCTACCCTAGGAACC
CTTTCTCGCCTCATCGCAGGAGATGCCCACTTCGAAAGCAGGGTGTTCGA
CCGGGGGAATGTCCGCGAAACGACCAAATTGATTTTTCCTTGTCTCCTTT
CATTTACAAAGGACGTGGGATGGGAAGAGGGAGAGCGGGCAAGGGCAGCG
GCAGATTTGTGGGGAGATTTCCTCTCTAGTCCTCTGGTGTTGGGGCTCTT
GGAGGAGGAAGACGAGAGGCAGGAGGGGGAGGGTCTGCCTTTCTTTCTGG
CGAACGCGGTGGTGGCCCTGGGGGACATAAAAGATGGACGGGAAGAAGGA
GGAGAGAATATCGAAGCGCTGCTACGGGCTTTGCGGGTCGTGTGTGAGGA
ATCGCCAATTGGCCAGTCGTTGTTAACTCGGTCTGTGCTACCCTTGGTGG
ACGGAAACGAAGAGGAAGGATGCGAAGGAGGGGAGCACAGCTTTCATTTG
ACCAAGCTGGCAGAGTTGGCACTCTCCCATCATGTTCCAACAGCCATGGA
ATCTCTTGCATTGCTTCAGCAGCTCTTTGTGGGGGCCTGTGGCGAGAAGT
CTCCTCAGCTGTGGGCGGCATTGACTGGTGTGTTGACGAGCGCCACCACC
TTCAGCAGCAGCAGCAGCAGCAGCAGCAGCCACGGGGCCAGCTGTCCCAG
CAGGAGTCGTGCGGCTCCGACCTCGGCTTCCATTCAACTTTCTCGAAGCC
CATTACGTCGGCATCGGCTGCAGGCGGTAGCAGCCGCAACAGGTGGAGCA
AACGCAGGAGCACGTGTATGTGCCCCTTCGTTGCTGAACCTTTTGGTCGA
TCGTTTGCATGCGTTGGCAGATGAGGTAGAGGTTTGTTGTGGGGGTAGTG
GGTTGGAAGGACTAGAAATTGGGTCTCGTGGTTTGAACGAAGCTGTCTTT
CTGGAGCTGGAATGGTCTCTGCGGCCTGTTATGTCTATGTTGAGTTGGAT
GGCAACAACTGCTTTTTGTCATGCTCCTTCTTTACCGTACGAAGTGGACT
TGAGAAAAGAGATTGCCTTGCGTTTGGATGCCCGAGCCGTGAGCGTTATT
GTGCTGGGGGTAGCACACGTTCAGGTCTGGCAAGATGAATTCAAAAAGAT
GACAGTGGTGCATAACCCCATGTCATCAACGGAGAGTTTTGGTTTGGAAA
GCAATTGCCTGTCTCAGGTGACCCTGATGGAGAAGGTCCGGTGGTGTTTG
TCGAGTATGTATCCGCTTGAGAGGTTTGAGTTGGTTTTGAGGGGCTGTCG
ATTGATGTTGCTGGTGGGCAGTGTGGGTGGCACAACATCAGGTGGAGCAG
AGGAGGAAGAAGAGGAGGCTGAGTGGACGAAAGGGTGTCCTGGCCGTTCG
GTGTCTAATGAACGCCCGCGACACCGGCATTGGCTATCAATCGCCCTCAA
CAGCTCGCCAGTCATCAGTATTCTTGCCGCTGCCCTCCACCAAGGGACCG
ATCGCGAGCTTGTCTCCCAAACCCTTTCCTTTCTCACCGATTTAAAGAAC
ATGAACAACAACGCCAGTCGGCAGAGTGAGGGCGATGTGGAGGAAGGGCC
AGAGTGGAGTGGTCTGATGGACGGTATCTTTCGTCGGAACCAAGCAGTGC
ACGGGTGCCTGCAGATGTTTGAAAAAGAAATGACCGACGCGGCAAACGCA
AACGGAAAGCTGATAATGGAGCTGAGAGATAATATTATTCTAGTGGAAGA
GGCGGAAGGAGAACGAGTGGCGCTACAAGCGGCTCATGACCAAGAAATGG
AGCGGGTTGGACAGGATTGGAGGGAGGAGGTCCTAAAGATGCGCGAAGCG
GCGAAAGCAGAAAGGAGCAAGGATAAGGCCGAACGAGCGGAGATTATCTC
TGATCGAGAGGGATGGCAAGCACGAGCCCAAGCAGCAGAAACGGAGCTCG
CTCAAGTGCAGGAGGCACAGCAGGCCACGGCAGTCGAGGCAGCAGCATTG
CAAAGGCAAGTCGAGGCGCTCACTGTGCAACTGATGCAGTGCCAAAAGGA
GAGTATGACCCATGAGGGGAGAGCTGCAGAGTTAGCGAGCGAGGTGGTAG
AACACCGACAACGAGCTTACGACGCATGCCGACATAAAAAAGAGGCTGAG
GACGTGGTGCGGAAGAGCAATGCCCAGGTAGACAAGGCTCTAAAGAAGAT
GACAATGCTTTGCGACGCATTTAAAGTCAAAGACGAAGCGGCAAGAGTTG
ATAAGGCTCGATTACGCAAGCTGGATGTGCATGTAGGGGCGGTGGAGAAG
GAGCTGGCGATTCTTCGTGGACGTCTTGCAGAGACAGAGGGCGAAAACCG
GCGTTTGACAGCCTTGTGCGAGGCGGAAGTAGCGCATCGGGAGCAAGAAG
AGCAAGCGAGGGAAGAAGTGATGGAGAGGATGTTGGAGGACATGAAGGCG
CTTCGAACGTTGGTGGAGGTCAAGACGGAGGCAATGCGAGAATTGGAGTA
TGCGCACCAGCAGGCGCGGGAAGAGTTGCAACAAAAGGATGGGTTGTTGA
TGGATCAGGAGGATGAATTGCGACGGCAACAGCATGCGGCGGTTTTAATC
AAGCGTTTGGTAACCGCGGTGGAGAAGGATGACGAGAAAGGGGAGTGGGA
GGAAGGAGGGAGGGAAAGGCAATGTTTATAATGTATGTACACAGCCGCGC
GATCACAAAGGAAGAAAAAGAAAAAAGTCAAATTAAACAAGGTCAGATAA
TGTCGTTAATTCAA
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protein sequence of NO08G01500.1

>NO08G01500.1-protein ID=NO08G01500.1-protein|Name=NO08G01500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1327bp
MTLIATSPSSSDRYAASVPVPYNLNASKSQSIIVTRQNTSKVMTPTSSMA
FVQAARTIRDYLHTLEKDKQAEVNHLSHQERSYSLFLLLSQQLRDLTVAS
TSTCHSPAPSASPGRAASPPPWSFCYKESRGVQVETALTLLLLWVRLVKR
HPSPDEQALLCLTMDCLASLVRHDRIFQYLIIRLWNQRSDGTRSSIPGVS
LQTFCLETFVDWRRGPAGRVENEACSGKNYSKVPVTSSQLASLLRLWDGL
AARQPLEVQVENYPMLTDCLLHPIFTADSTPVPLSPTRRERTKTPAIMTM
ERKKEKLKRRGGVKRRSGCARGKGASPHVAPGALRDEEEEEEAGREVKEE
EDEEGEVEGREERDGIPDRLTMNTNGYQDNEEEEDPNLLLLPSLHLLAHA
ARCSPSFRLFLKALDYQEEHLIFDALLSLVVSAQSQPSTTPLMALATLGT
LSRLIAGDAHFESRVFDRGNVRETTKLIFPCLLSFTKDVGWEEGERARAA
ADLWGDFLSSPLVLGLLEEEDERQEGEGLPFFLANAVVALGDIKDGREEG
GENIEALLRALRVVCEESPIGQSLLTRSVLPLVDGNEEEGCEGGEHSFHL
TKLAELALSHHVPTAMESLALLQQLFVGACGEKSPQLWAALTGVLTSATT
FSSSSSSSSSHGASCPSRSRAAPTSASIQLSRSPLRRHRLQAVAAATGGA
NAGARVCAPSLLNLLVDRLHALADEVEVCCGGSGLEGLEIGSRGLNEAVF
LELEWSLRPVMSMLSWMATTAFCHAPSLPYEVDLRKEIALRLDARAVSVI
VLGVAHVQVWQDEFKKMTVVHNPMSSTESFGLESNCLSQVTLMEKVRWCL
SSMYPLERFELVLRGCRLMLLVGSVGGTTSGGAEEEEEEAEWTKGCPGRS
VSNERPRHRHWLSIALNSSPVISILAAALHQGTDRELVSQTLSFLTDLKN
MNNNASRQSEGDVEEGPEWSGLMDGIFRRNQAVHGCLQMFEKEMTDAANA
NGKLIMELRDNIILVEEAEGERVALQAAHDQEMERVGQDWREEVLKMREA
AKAERSKDKAERAEIISDREGWQARAQAAETELAQVQEAQQATAVEAAAL
QRQVEALTVQLMQCQKESMTHEGRAAELASEVVEHRQRAYDACRHKKEAE
DVVRKSNAQVDKALKKMTMLCDAFKVKDEAARVDKARLRKLDVHVGAVEK
ELAILRGRLAETEGENRRLTALCEAEVAHREQEEQAREEVMERMLEDMKA
LRTLVEVKTEAMRELEYAHQQAREELQQKDGLLMDQEDELRRQQHAAVLI
KRLVTAVEKDDEKGEWEEGGRERQCL*
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Synonyms
Publications