NO08G01330, NO08G01330 (gene) Nannochloropsis oceanica
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Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO08G01330 vs. NCBI_GenBank
Match: EWM26689.1 (pentatricopeptide repeat-containing protein mitochondrial [Nannochloropsis gaditana]) HSP 1 Score: 870.9 bits (2249), Expect = 6.200e-249 Identity = 555/1480 (37.50%), Postives = 781/1480 (52.77%), Query Frame = 0
Query: 245 GGVQLDHVLFSPLIEELANRRDVGGKDEPGCRQAWA----AWEEVRKYDRRLTLPAFQSLQSCLINTQQYHHLLQLCRDLQETALALPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANPLLLQEAITTAAIQACLCLHDHIQAEMWINLTLEQGKHHPRAYQQALRSCLTLGRWDEMQRLFAQRTEKGNNEEDFDIFRLMATGAARLAQAPMQELSPFLEEVERRGWVGGRHVATAVVASA-SDLSXXXXXXXXXXXXXXXXXXXKRA-GMQRSSPSPAMSVHSTVAVELLHRRKGGGWQDALRVLKRLERVADELGDREI----VRNAAPTYERIMNAATKAGDLEAATLILSMLQAREVPVSSMGYNSILYGCAQTGQLARARKIFQEMLAAPATASAATGKG--------------------------------------VLPPLPTLINYNTMLLVLAKKGEFSEAKALLAEMRSPXXXXXXXXXXXXXXXXXXXXXXYEGVCEFFQKEMKGDGRREDRRVXXXXXXXXXXXXALQKW-KGGGRSRASGGGEEGRM------ISESSEKASAWTRGLAVLHELQSTPGVAPDLQTFNTLMDIGCKFDHIDEARSIILSTMHAANQTPDRVTYNILAMGFVRAKRYEEAIEVVEEGK----QVSWDALTYWVMFEALAGLRRDKELDALFWKRHKKIREGGAVDNQQRRGGRSITRGSRGRRTVKDESRD--DQALEELLCGMIHAGRLEDGLCLVTALEKEIIKKQAGKNGGALQLTPAAFHQCLQACKANGNLEGALLLLREMQRRGLPLGIAAYDTVVRICSTQHAWKKGLELLDHLRAEPALAHQMTRELHNTRVSFFAQLKDLKGCRHALEEMRADGHVPDGKSYAWALHGEAGTGTRNEAGVGELLDKAREEGWELTEEMLLAHTTALKRSGDWWGGMQVLERVAADRKKQLEQQGKQG--------GGDG--------VLNITSHIINNVLSALAQDKQWSRIFALQASMYEAYGATPDNVTYLYQIMALAQSGKGDEALSLFQQIRAGAFGPDVFAQDPMYTALLSNSGVALDGSAETIDKLLLMREEDGLPVTPHFVHSLISTYGKSGHLAKAIAVFESIPTYLNGQPPDLVAFNALIMAHRLAGTPLEIGGLPLYRQLLISXXXXXXXXXXXXXXDVSTTVPDGWTYTPLIASCESEGLWPVAMYLYDESAFTMHVTTWGSSPLSPVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLQGGKNNASLTMEVPPSALDNLVDTETGSS-----NSSRSSRARGTRFEILKTLIASLDRLGVDLFVQDLYKDGYNHGIFNHWLHKDGRGRVMDFHHFSRPLAKAAINHALEEFEADQLEQRKLPWGKRRKRDSPWVMIVGQGMRRRGGRGVLKQEVVRLLMELDPPLHAEVQANNLGRLVVAGKKIKDYTTARIERRGGRVRRREPVG 1643
G V++D L S L V G E G R+ WA AWE VR++ LT AF++L+S L T QY LL LCRDLQ + E + T I+ACL L DH + + + L QG H YQ+AL + L LGRWDEM RL+ E E+D+ + +MATGAARL++ PM++ PFL +ERRGW+ G + ++ AS+ S + K A G + VH+ VA+E+L R WQ++L+VL+RL A L + + + A P +ER+++AA KAG+LEAA +L L AR + S+ YN++LY A+TGQ++ A+ +F+ M AA G P P L++YNT+L A R P +G +FF++EM + R+V A Q +G GRS G + + + + W + LA+ +L++ G AP+L FN +MDIGCK H+D+ARS++L M PDRVTYN LA G++R +RYEEA+++ E + + WD+ TY VM +ALAGL++D E+ LFW+R +REG A + +R G + G R +D R + LEE+L M++ GR++DG+ L+ LE +I Q K L +F + +Q CK+ +LEGAL LL E++RRG AA V+R+CS + AW+ GL++++ + P L+ M R+LH RVSF A L D+ GCR AL EMR +G +PD K Y WAL EA T RN GVGELL +A+E+G LT ++L A L++SG+W G +Q+L+R+ A R++QL+ + + G G D V I++HI N+VL+ LAQ K+W +I LQ +M E +G PDNV++LY++ AL+++ +AL++ +IR GA GP VFAQD MYT +L SG ALD + I+ L++ EED P T HF+++LI YG+ G LAKA+ F IPT+LNG PD+VAFNAL++A RLA TPL+ G LPLYR+LL S PDGWTYT LI +CE++G WPVAMYLYD+SAFT+ G +P + + E + VD G+ +R +++ RFE LKTL++ L++L + LF++ LY+D Y G+F+ W +G GRVMD HHFS PLA AI +AL EFE++QLEQR+LPWGKR+K SPWV+IVGQG++R+ G G LK+EV+R+ LDPPL A+V N GRL+V +IK YTTARIE RG RE +G
Sbjct: 237 GSVEVDQELCSSL---------VVGAAENGRRKGWAGSWRAWEVVREHRTGLTAIAFKALRSSLTRTGQYERLLDLCRDLQ------------------------GALDSSGRSQGLSTASQSAEDVATTGIEACLHLEDHAELKKCVQKRLRQGAFHAIVYQEALSAWLALGRWDEMLRLYRDGQEGEAWEDDYLLLSIMATGAARLSKTPMKDSVPFLMNMERRGWIAGMSESPSLPASSISPFARSLLARDWNTSPRQRQTGEKVASGGSLRHDYESKPVHAIVALEMLRRADSRRWQESLQVLRRLCECAGRLEAKGVGVSALERAMPAFERVISAAVKAGNLEAAKDLLKRLDARGMCPSARSYNALLYEYARTGQVSDAQTLFEAMCAAGKGRHEDNAAGGAFHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPPRAPAPDLVSYNTVL-------------AAGTAARDP-----------------------KGARDFFEEEMV-----KKRKVRPDEVTYITLLSAWQAMARGYGRSEDEESHITGHVPHASPRLKKDVDSDEVWLQTLALFKDLENAEGGAPNLMAFNIMMDIGCKTGHVDDARSLVLPAMKRHACEPDRVTYNTLAQGYLRGRRYEEALKICRESRVGPVNLGWDSHTYGVMLKALAGLKKDDEMKGLFWERINALREGKANERASQRTGLPDSDG----RHFQDSKRSGIQKLLEEILSAMVYVGRVDDGVLLIRELENQISGPQ--KKNALYLLGADSFERSVQFCKSTRDLEGALRLLEELERRGERPSAAACFAVMRLCSIKQAWQTGLDVVERVAQCPELSRAMGRDLHTARVSFCAHLNDIAGCRVALREMRKEGFLPDEKVYGWALKCEA-TRPRNVGGVGELLVQAKEDGVMLTPDVLKAQMATLRQSGNWRGAVQLLDRMVALREQQLQNEEQDGQASQRVVRGTDADYGPQISQVTEISTHIFNDVLATLAQGKEWYQILELQGNMLEKHGVVPDNVSFLYRLQALSETKDWKQALAVLDEIRIGAHGPPVFAQDSMYTVIL--SGGALDRQPKEIEGLVMRWEEDSRPYTRHFLNALIGAYGRGGQLAKAVDTFNKIPTHLNGAEPDIVAFNALLVAQRLAATPLDEGALPLYRELLSRAP--------------SGLAPDGWTYTSLIVACEAKGAWPVAMYLYDDSAFTL--PRAGGAPAAASRASEGEGLEDVVKDAHFKAAEDARGLGWK--DPSRTEVHSVWEKSETGTWMGVDVTAGAEYRHPIAGARDAKSNSARFESLKTLMSCLEKLNIGLFIEKLYRDAYQQGVFSPWSQTEGNGRVMDLHHFSCPLATVAIRYALLEFESEQLEQRRLPWGKRKKSMSPWVIIVGQGLKRKSGSGALKKEVLRIFAGLDPPLQADVDKRNTGRLIVPASRIKAYTTARIE-RGKHTCTREALG 1614
BLAST of NO08G01330 vs. NCBI_GenBank
Match: XP_005856386.1 (pentatricopeptide repeat-containing protein, partial [Nannochloropsis gaditana CCMP526] >EKU19973.1 pentatricopeptide repeat-containing protein, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 110.2 bits (274), Expect = 6.400e-20 Identity = 99/371 (26.68%), Postives = 156/371 (42.05%), Query Frame = 0
Query: 449 AQAPMQELSPFLEEVERRGWVGGRHVATAVVASA-SDLSXXXXXXXXXXXXXXXXXXXKRA-GMQRSSPSPAMSVHSTVAVELLHRRKGGGWQDALRVLKRLERVADELGDREI----VRNAAPTYERIMNAATKAGDLEAATLILSMLQAREVPVSSMGYNSILYGCAQTGQLARARKIFQEMLAA--PATASAATGKGVLPPLPTLINYNTMLLVLAKKGEFSEAKALLAEMRSPXXXXXXXXXXXXXXXXXXXXXXYEGVCEFFQKEMKGDGRREDRRVXXXXXXXXXXXXALQKW-KGGGRSRASGGGEEGRM------ISESSEKASAWTRGLAVLHELQSTPGVAPDLQTFNTLMDIGCKFDHID 805
++ PM++ PFL +ERRGW+ G + ++ AS+ S + K A G + VH+ VA+E+L R WQ++L+VL+RL A L + + + A P +ER+++AA KAG+LEAA +L L AR + S+ YN++LY A+TGQ++ A+ +F+ M AA A G P +G +FF++EM + R+V A Q +G GRS G + + + + W + LA+ +L++ G AP+L FN +MDIGCK H+D
Sbjct: 1 SKTPMKDSVPFLMNMERRGWIAGMSESPSLPASSISPFARSLLARDWNTSPRQRQTGEKVASGGSLRHDYESKPVHAIVALEMLRRADSRRWQESLQVLRRLCECAGRLEAKGVGVSALERAMPAFERVISAAVKAGNLEAAKDLLKRLDARGMCPSARSYNALLYEYARTGQVSDAQTLFEAMCAAGKGRHEDNAAGGAFHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPPRAPAPDLVSYNTVLAAGTAARDPKGARDFFEEEMV-----KKRKVRPDEVTYITLLSAWQAMARGYGRSEDEESHITGHVPHASPRLKKDVDSDEVWLQTLALFKDLENAEGGAPNLMAFNIMMDIGCKTGHVD 366
BLAST of NO08G01330 vs. NCBI_GenBank
Match: XP_005856213.1 (hypothetical protein NGA_2036000, partial [Nannochloropsis gaditana CCMP526] >EKU20146.1 hypothetical protein NGA_2036000, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 67.4 bits (163), Expect = 4.800e-7 Identity = 54/205 (26.34%), Postives = 79/205 (38.54%), Query Frame = 0
Query: 1484 LKTLIASLDRLGVDLFVQDLYKDGYNHGIFNHWLHKDGRGRVMDFHHFSRPLAKAAINHALE--------------------------------------------------EFEADQ---LEQRKLPWGKRRKRD-------SPWVMIVGQGMRRRGGRGVLKQEVVRLL-MELDPPLHAEVQANNLGRLVVAGKKIKDYTTAR 1628
L +LI +++ + V Y+ Y+ G NHW RV+D H+FSRPLAKAA++H LE +AD+ + LPW + + R P V++ G G RR G VL+ ++ L E DPPL + N GRL+V + Y A+
Sbjct: 427 LNSLICAMEHPALHSLVASFYQQAYDKGQVNHW--SVAFYRVVDLHNFSRPLAKAALHHVLECMLEKHGPGVARDLSIVSDGEEMGTKEEKGFRSTAPFQSLSGEIPCDPAISTQADKKWSASEMYLPWPRNKARHGYVQDPRDPLVIVTGHGRRRAAGTSVLRDDIADFLTSEFDPPLTTKTMPYNPGRLLVPSSTLLTYLLAK 629 The following BLAST results are available for this feature:
BLAST of NO08G01330 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 3
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO08G01330 ID=NO08G01330|Name=NO08G01330|organism=Nannochloropsis oceanica|type=gene|length=4980bpback to top protein sequence of NO08G01330.1 >NO08G01330.1-protein ID=NO08G01330.1-protein|Name=NO08G01330.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1660bpback to top Synonyms
Publications
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