NO08G01140, NO08G01140 (gene) Nannochloropsis oceanica

Overview
NameNO08G01140
Unique NameNO08G01140
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1165
Alignment locationchr8:358009..359173 -

Link to JBrowse

Properties
Property NameValue
DescriptionHeat shock protein hsp20
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:358009..359173 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008978HSP20-like_chaperone
IPR002068A-crystallin/Hsp20_dom
Homology
BLAST of NO08G01140 vs. NCBI_GenBank
Match: EWM26760.1 (heat shock protein hsp20 [Nannochloropsis gaditana])

HSP 1 Score: 266.9 bits (681), Expect = 5.100e-68
Identity = 142/210 (67.62%), Postives = 165/210 (78.57%), Query Frame = 0
Query:    1 MLRYLSRPLVHAARTTTAG---AHAQPPLALRRLSSRSIGRSVAGRQGGGGSTGQVMPRGQSGPPLASLGRFFDDFGMDVFNDPFFRPFLARGPGSSLEAADVSMGLDIAETDKEYVVKAELPGVKKEDIKVTFQEGILNIAAERKCEEVKEDERTQRHYSDFAYGKVSRSLRVPDAAEKDQVDAHLEDGVLTVKIAKGEHSKPKEIEVK 208
            M+R   R L HA R  T+       QP L +R LSSR+  RSVA R G G   GQV+ RG  GPP A+LGR FDD GM+VFNDPFFRPF ARGPG ++EAA+V+MGLDIAET+KEY+VKAELPGVKKED+KVTF +G+LNI+AERK E   EDE  ++HYSDFAYGKVSRSLRVPDAAEKD VDAHLEDGVLTVK+ KGE SKP++I +K
Sbjct:   16 MMRQSCRSLGHAGRAVTSAYSYRTTQPALPVRCLSSRAT-RSVAPR-GSGNRHGQVVSRGPGGPPWANLGRIFDDMGMEVFNDPFFRPFFARGPGGAMEAAEVAMGLDIAETEKEYIVKAELPGVKKEDVKVTFHDGVLNISAERKQEAAGEDEHHRQHYSDFAYGKVSRSLRVPDAAEKDHVDAHLEDGVLTVKVKKGEDSKPQDIPIK 223          
BLAST of NO08G01140 vs. NCBI_GenBank
Match: WP_020494518.1 (Hsp20/alpha crystallin family protein [Verrucomicrobium sp. 3C])

HSP 1 Score: 112.1 bits (279), Expect = 2.100e-21
Identity = 58/121 (47.93%), Postives = 79/121 (65.29%), Query Frame = 0
Query:   87 LARGPGSSLEAADVSMGLDIAETDKEYVVKAELPGVKKEDIKVTFQEGILNIAAERKCEEVKEDERTQRHYSDFAYGKVSRSLRVPDAAEKDQVDAHLEDGVLTVKIAKGEHSKPKEIEVK 208
            L   P   LE A+     DI E DKEY+VK ELPG+K+E++KV+ + G+L I+ ERK E  KE++  + H  + AYG  SRS  +PD    D++DA  ++GVL V + KGEH+KPK IEVK
Sbjct:   38 LLEAPSERLEIAEWRPLADITEDDKEYLVKLELPGMKREEVKVSMESGVLTISGERKLE--KEEKDKKYHRVERAYGSFSRSFVIPDEVVVDKIDAQFKEGVLQVHLPKGEHAKPKTIEVK 156          
BLAST of NO08G01140 vs. NCBI_GenBank
Match: WP_024807259.1 (Hsp20/alpha crystallin family protein [Verrucomicrobia bacterium LP2A])

HSP 1 Score: 108.6 bits (270), Expect = 2.300e-20
Identity = 54/121 (44.63%), Postives = 79/121 (65.29%), Query Frame = 0
Query:   87 LARGPGSSLEAADVSMGLDIAETDKEYVVKAELPGVKKEDIKVTFQEGILNIAAERKCEEVKEDERTQRHYSDFAYGKVSRSLRVPDAAEKDQVDAHLEDGVLTVKIAKGEHSKPKEIEVK 208
            L   P   LE A+     DI E DKEY+VK E+PG+K++++KV+ + G+L I+ ERK E  KE++  + H  + AYG  SRS  +PD    +++DA  ++G+L V + KGEH+KPK IEVK
Sbjct:   38 LLEAPSERLELAEWRPLADITEDDKEYLVKIEIPGMKRDEVKVSMESGVLTISGERKLE--KEEKSKKYHRVERAYGSFSRSFVIPDDVVAEKIDAEFKEGILQVHLPKGEHAKPKTIEVK 156          
BLAST of NO08G01140 vs. NCBI_GenBank
Match: OGS75279.1 (heat-shock protein Hsp20 [Gallionellales bacterium GWA2_55_18])

HSP 1 Score: 108.2 bits (269), Expect = 3.100e-20
Identity = 56/112 (50.00%), Postives = 78/112 (69.64%), Query Frame = 0
Query:   95 LEAADVSMGLDIAETDKEYVVKAELPGVKKEDIKVTFQEGILNIAAERKCEEVKEDERTQRHYSDFAYGKVSRSLRVPDAAEKDQVDAHLEDGVLTVKIAKGEHSKPKEIEV 207
            L  AD +  +DI+ETD  Y+VKAE+PGVKKED+KVT Q+G+L +  ERK E  KE++  + H  +  YG  +RS RVPD A+++ V A  +DGVL V ++K E +KPK+I V
Sbjct:   37 LAVADWAPSVDISETDTAYLVKAEIPGVKKEDVKVTIQDGMLTLQGERKQE--KEEKGKKFHRIERCYGSFARSFRVPDDADENSVKAEFKDGVLNVTLSKSEKAKPKQINV 146          
BLAST of NO08G01140 vs. NCBI_GenBank
Match: WP_090893594.1 (Hsp20/alpha crystallin family protein [Candidatus Nitrospira nitrificans] >CUS31355.1 Heat shock protein, Hsp20 family [Candidatus Nitrospira nitrificans])

HSP 1 Score: 106.3 bits (264), Expect = 1.200e-19
Identity = 59/133 (44.36%), Postives = 85/133 (63.91%), Query Frame = 0
Query:   76 DVFNDPFFRPFLARGPG-SSLEAADVSMGLDIAETDKEYVVKAELPGVKKEDIKVTFQEGILNIAAERKCEEVKEDERTQRHYSDFAYGKVSRSLRVPDAAEKDQVDAHLEDGVLTVKIAKGEHSKPKEIEVK 208
            D  N  F RP  AR  G  ++  AD +  +DI+ET+ EY +KAE+P VKKED+KVT ++G+L I  ERK E  KE++  + H  + +YG   R+  +PD  E+++V A  +DGVL + + K E +KPK IEVK
Sbjct:   17 DRLNRMFARPAAARTNGKETMIVADWTPSVDISETEGEYQIKAEIPDVKKEDVKVTLEDGVLTIQGERKHE--KEEKGKKFHRIERSYGSFVRTFSLPDVIEEEKVKAEFKDGVLNLHLPKSEKAKPKAIEVK 147          
BLAST of NO08G01140 vs. NCBI_GenBank
Match: OQW33564.1 (heat-shock protein Hsp20 [Nitrospira sp. SG-bin1])

HSP 1 Score: 106.3 bits (264), Expect = 1.200e-19
Identity = 59/133 (44.36%), Postives = 85/133 (63.91%), Query Frame = 0
Query:   76 DVFNDPFFRPFLARGPG-SSLEAADVSMGLDIAETDKEYVVKAELPGVKKEDIKVTFQEGILNIAAERKCEEVKEDERTQRHYSDFAYGKVSRSLRVPDAAEKDQVDAHLEDGVLTVKIAKGEHSKPKEIEVK 208
            D  N  F RP  +R  G  ++  AD +  +DI+ET+ EY +KAE+P VKKED+KVT ++G+L I  ERK E  KE++  + H  + +YG   RS  +PD  E+++V A  +DGVL + + K E +KPK IEVK
Sbjct:   17 DRLNRMFARPAASRTNGKETMIVADWTPSVDISETEGEYQIKAEIPDVKKEDVKVTLEDGVLTIQGERKHE--KEEKGKKFHRIERSYGSFVRSFSLPDVIEEEKVKAEFKDGVLNLHLPKSEKAKPKAIEVK 147          
BLAST of NO08G01140 vs. NCBI_GenBank
Match: OLB64836.1 (heat-shock protein Hsp20 [Nitrospirae bacterium 13_2_20CM_2_61_4])

HSP 1 Score: 105.9 bits (263), Expect = 1.500e-19
Identity = 57/118 (48.31%), Postives = 78/118 (66.10%), Query Frame = 0
Query:   90 GPGSSLEAADVSMGLDIAETDKEYVVKAELPGVKKEDIKVTFQEGILNIAAERKCEEVKEDERTQRHYSDFAYGKVSRSLRVPDAAEKDQVDAHLEDGVLTVKIAKGEHSKPKEIEVK 208
            G   S+  A+ S  +DI E DKEY++K ELP VKK+D+KVT + G+L I  ERK E  KE++  + H  + AYG   RS  +PD A+ ++V+A  +DGVL V +AK E +KPK IEVK
Sbjct:   34 GEQESMTIAEWSPLVDITEDDKEYLIKTELPEVKKDDVKVTVENGVLTITGERKFE--KEEKGRKYHRVERAYGNFVRSFTLPDDADANKVNAEFKDGVLKVHVAKSEAAKPKHIEVK 149          
BLAST of NO08G01140 vs. NCBI_GenBank
Match: WP_009965293.1 (Hsp20/alpha crystallin family protein [Verrucomicrobium spinosum])

HSP 1 Score: 105.5 bits (262), Expect = 2.000e-19
Identity = 55/118 (46.61%), Postives = 77/118 (65.25%), Query Frame = 0
Query:   90 GPGSSLEAADVSMGLDIAETDKEYVVKAELPGVKKEDIKVTFQEGILNIAAERKCEEVKEDERTQRHYSDFAYGKVSRSLRVPDAAEKDQVDAHLEDGVLTVKIAKGEHSKPKEIEVK 208
            G   +L  A+ +  +DI E DKEYV+KAELP +KKED+KVT   G L +A +RK E  KE+E  + H  + +YG   RS  +PDA +  +V+A  +DG+LTV + K E +KPK +EVK
Sbjct:   40 GAKEALTVAEWAPPVDITEDDKEYVIKAELPEIKKEDVKVTVTNGELTLAGQRKFE--KEEEGKKYHRVERSYGSFLRSFTLPDAVDATKVEAQFKDGILTVHLPKDERAKPKSVEVK 155          
BLAST of NO08G01140 vs. NCBI_GenBank
Match: SPE58858.1 (Heat shock protein, Hsp20 family [Verrucomicrobia bacterium])

HSP 1 Score: 104.4 bits (259), Expect = 4.400e-19
Identity = 58/118 (49.15%), Postives = 78/118 (66.10%), Query Frame = 0
Query:   90 GPGSSLEAADVSMGLDIAETDKEYVVKAELPGVKKEDIKVTFQEGILNIAAERKCEEVKEDERTQRHYSDFAYGKVSRSLRVPDAAEKDQVDAHLEDGVLTVKIAKGEHSKPKEIEVK 208
            G    L  A+ +  +DI+E DKEY++KAELP VKKED+KVT +EG L I  ERK E  KE++  + H  + AYG   RS  +PD A   +V A  +DGVLTV +AK + +KP++IEVK
Sbjct:   34 GQEEPLAVAEWAPLVDISEDDKEYLIKAELPEVKKEDVKVTAEEGTLTIMGERKFE--KEEKGKKYHRVERAYGSFGRSFSLPDDASPAKVTADFKDGVLTVHLAKTQRAKPQQIEVK 149          
BLAST of NO08G01140 vs. NCBI_GenBank
Match: OLB59484.1 (heat-shock protein Hsp20 [Nitrospirae bacterium 13_2_20CM_2_61_4])

HSP 1 Score: 104.0 bits (258), Expect = 5.800e-19
Identity = 54/130 (41.54%), Postives = 83/130 (63.85%), Query Frame = 0
Query:   78 FNDPFFRPFLARGPGSSLEAADVSMGLDIAETDKEYVVKAELPGVKKEDIKVTFQEGILNIAAERKCEEVKEDERTQRHYSDFAYGKVSRSLRVPDAAEKDQVDAHLEDGVLTVKIAKGEHSKPKEIEVK 208
            F+  F +PF        +   + +   DI E +KEY++KAELP +KKED+KVT + G+L I+ ERK E  KE+++ + H  +  YG   RS  +PD A+  +V+A  ++G+LTV + K EH+KPK+I+VK
Sbjct:   21 FSTLFGQPFRRTNGREEITLPEWTPLADITEDEKEYLIKAELPEMKKEDVKVTVENGVLTISGERKFE--KEEKKKKYHRVERGYGTFMRSFTLPDDADFSKVNAEFKNGLLTVHVPKSEHAKPKQIDVK 148          
The following BLAST results are available for this feature:
BLAST of NO08G01140 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM26760.15.100e-6867.62heat shock protein hsp20 [Nannochloropsis gaditana... [more]
WP_020494518.12.100e-2147.93Hsp20/alpha crystallin family protein [Verrucomicr... [more]
WP_024807259.12.300e-2044.63Hsp20/alpha crystallin family protein [Verrucomicr... [more]
OGS75279.13.100e-2050.00heat-shock protein Hsp20 [Gallionellales bacterium... [more]
WP_090893594.11.200e-1944.36Hsp20/alpha crystallin family protein [Candidatus ... [more]
OQW33564.11.200e-1944.36heat-shock protein Hsp20 [Nitrospira sp. SG-bin1][more]
OLB64836.11.500e-1948.31heat-shock protein Hsp20 [Nitrospirae bacterium 13... [more]
WP_009965293.12.000e-1946.61Hsp20/alpha crystallin family protein [Verrucomicr... [more]
SPE58858.14.400e-1949.15Heat shock protein, Hsp20 family [Verrucomicrobia ... [more]
OLB59484.15.800e-1941.54heat-shock protein Hsp20 [Nitrospirae bacterium 13... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008940NSK008940Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G01140.1NO08G01140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582137gene_3443Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100001g20gene3938Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G01140.1NO08G01140.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G01140 ID=NO08G01140|Name=NO08G01140|organism=Nannochloropsis oceanica|type=gene|length=1165bp
ACAAGCAGCTGGTACCACACTCTAAACCCCAATAAAATGTTACGATACTT
ATCCCGACCGCTTGTCCATGCTGCGCGCACAACGACCGCCGGTGCCCATG
CCCAGCCCCCTCTGGCCTTGCGTAGACTCAGCTCCCGCTCTATCGGCCGC
TCGGTAGCCGGACGGCAAGGTGGCGGTGGTAGCACTGGCCAAGTGATGCC
TCGTGGACAAAGTGGTCCTCCTTTAGCTAGCCTTGGGCGATTTTTTGACG
ATTTCGGAATGGACGTGTTTAATGATCCCTTCTTCCGCCCTTTTCTGGCG
CGCGGGCCAGGCAGCTCTTTGGAGGCAGCAGACGTTTCTATGGGACTGGA
CATTGCGGAGACGGATAAGGAGTACGTGGTCAAAGCTGAGCTTCCCGGGG
TCAAGAAGGAGGATATCAAGGTGACCTTCCAGGAAGGCATCCTGAACATC
GCGGCGGAACGCAAGTGCGAGGAAGTGAAGGAGGACGAGCGCACCCAGCG
CCACTACTCAGACTTTGCCTACGGGAAGGTGTCTCGCTCCCTGCGCGTGC
CGGACGCTGCGGAGAAGGATCAAGTGGATGCACATTTAGAGGATGGGGTG
CTGACGGTTAAAATTGCCAAGGGGGAGCACTCGAAACCGAAGGAGATCGA
AGTCAAGTGAATCGAGAAGAACAAGGGATGGAAGGGAGGAGGGAATGAGG
GAAGGGAGAGAGGGAGTGAGATTGGTAAAAGGAAAGGAAAGATAATAAAT
ATGGAGTAATCGGGAGGTGATAAAAAAGGACGGTGGGCGAAGAAGATGAT
TATGTGCAGCGAGAGAGGTGAATATGAGGATCGAGAGAAACCAAAGGAGG
AGCAGCGCCCGCTGCGGCATGACAAGCTGCATTGGGAGACATGAGATTGC
TGCAAAAAGAGAGAAACGTGGATGTCCTCACGGTACCAAAGAAAGACGAC
AACACATACGTAAACAAGCACAGAATGAGCGGCAGTAAGAAGGGCGTGCC
AAATGTAAGATGGAAGAATTAGGAACAGAATGCGAAGAGGCCGCCCATGA
ACACACACAAACCATCCCACACACGAACCCTCCCGGAACTAGGAAAGGAA
GAATCTAACAGAGAAAAGGAAGATTTGTTGTCTAAAAGACATGCAGACAC
ACACAGACACGAGCG
back to top

protein sequence of NO08G01140.1

>NO08G01140.1-protein ID=NO08G01140.1-protein|Name=NO08G01140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=208bp
MLRYLSRPLVHAARTTTAGAHAQPPLALRRLSSRSIGRSVAGRQGGGGST
GQVMPRGQSGPPLASLGRFFDDFGMDVFNDPFFRPFLARGPGSSLEAADV
SMGLDIAETDKEYVVKAELPGVKKEDIKVTFQEGILNIAAERKCEEVKED
ERTQRHYSDFAYGKVSRSLRVPDAAEKDQVDAHLEDGVLTVKIAKGEHSK
PKEIEVK*
back to top
Synonyms
Publications