NO08G01140.1, NO08G01140.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G01140.1
Unique NameNO08G01140.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1165
Alignment locationchr8:358009..359173 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:358009..359173 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G01140.1 vs.
Match: EWM26760.1 (heat shock protein hsp20 [Nannochloropsis gaditana])

HSP 1 Score: 266.9 bits (681), Expect = 5.100e-68
Identity = 142/210 (67.62%), Postives = 165/210 (78.57%), Query Frame = 0 
Query:    1 MLRYLSRPLVHAARTTTAGAH---AQPPLALRRLSSRSIGRSVAGRQGGGGSTGQVMPRGQSGPPLASLGRFFDDFGMDVFNDPFFRPFLARGPGSSLEAADVSMGLDIAETDKEYVVKAELPGVKKEDIKVTFQEGILNIAAERKCEEVKEDERTQRHYSDFAYGKVSRSLRVPDAAEKDQVDAHLEDGVLTVKIAKGEHSKPKEIEVK 208
            M+R   R L HA R  T+       QP L +R LSSR+  RSVA R G G   GQV+ RG  GPP A+LGR FDD GM+VFNDPFFRPF ARGPG ++EAA+V+MGLDIAET+KEY+VKAELPGVKKED+KVTF +G+LNI+AERK E   EDE  ++HYSDFAYGKVSRSLRVPDAAEKD VDAHLEDGVLTVK+ KGE SKP++I +K
Sbjct:   16 MMRQSCRSLGHAGRAVTSAYSYRTTQPALPVRCLSSRAT-RSVAPR-GSGNRHGQVVSRGPGGPPWANLGRIFDDMGMEVFNDPFFRPFFARGPGGAMEAAEVAMGLDIAETEKEYIVKAELPGVKKEDVKVTFHDGVLNISAERKQEAAGEDEHHRQHYSDFAYGKVSRSLRVPDAAEKDHVDAHLEDGVLTVKVKKGEDSKPQDIPIK 223
The following BLAST results are available for this feature:
BLAST of NO08G01140.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26760.15.100e-6867.62heat shock protein hsp20 [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G01140NO08G01140Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G01140.1NO08G01140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G01140.1.cds1NO08G01140.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G01140.1 ID=NO08G01140.1|Name=NO08G01140.1|organism=Nannochloropsis oceanica|type=mRNA|length=1165bp
ACAAGCAGCTGGTACCACACTCTAAACCCCAATAAAATGTTACGATACTT
ATCCCGACCGCTTGTCCATGCTGCGCGCACAACGACCGCCGGTGCCCATG
CCCAGCCCCCTCTGGCCTTGCGTAGACTCAGCTCCCGCTCTATCGGCCGC
TCGGTAGCCGGACGGCAAGGTGGCGGTGGTAGCACTGGCCAAGTGATGCC
TCGTGGACAAAGTGGTCCTCCTTTAGCTAGCCTTGGGCGATTTTTTGACG
ATTTCGGAATGGACGTGTTTAATGATCCCTTCTTCCGCCCTTTTCTGGCG
CGCGGGCCAGGCAGCTCTTTGGAGGCAGCAGACGTTTCTATGGGACTGGA
CATTGCGGAGACGGATAAGGAGTACGTGGTCAAAGCTGAGCTTCCCGGGG
TCAAGAAGGAGGATATCAAGGTGACCTTCCAGGAAGGCATCCTGAACATC
GCGGCGGAACGCAAGTGCGAGGAAGTGAAGGAGGACGAGCGCACCCAGCG
CCACTACTCAGACTTTGCCTACGGGAAGGTGTCTCGCTCCCTGCGCGTGC
CGGACGCTGCGGAGAAGGATCAAGTGGATGCACATTTAGAGGATGGGGTG
CTGACGGTTAAAATTGCCAAGGGGGAGCACTCGAAACCGAAGGAGATCGA
AGTCAAGTGAATCGAGAAGAACAAGGGATGGAAGGGAGGAGGGAATGAGG
GAAGGGAGAGAGGGAGTGAGATTGGTAAAAGGAAAGGAAAGATAATAAAT
ATGGAGTAATCGGGAGGTGATAAAAAAGGACGGTGGGCGAAGAAGATGAT
TATGTGCAGCGAGAGAGGTGAATATGAGGATCGAGAGAAACCAAAGGAGG
AGCAGCGCCCGCTGCGGCATGACAAGCTGCATTGGGAGACATGAGATTGC
TGCAAAAAGAGAGAAACGTGGATGTCCTCACGGTACCAAAGAAAGACGAC
AACACATACGTAAACAAGCACAGAATGAGCGGCAGTAAGAAGGGCGTGCC
AAATGTAAGATGGAAGAATTAGGAACAGAATGCGAAGAGGCCGCCCATGA
ACACACACAAACCATCCCACACACGAACCCTCCCGGAACTAGGAAAGGAA
GAATCTAACAGAGAAAAGGAAGATTTGTTGTCTAAAAGACATGCAGACAC
ACACAGACACGAGCG
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protein sequence of NO08G01140.1

>NO08G01140.1-protein ID=NO08G01140.1-protein|Name=NO08G01140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=208bp
MLRYLSRPLVHAARTTTAGAHAQPPLALRRLSSRSIGRSVAGRQGGGGST
GQVMPRGQSGPPLASLGRFFDDFGMDVFNDPFFRPFLARGPGSSLEAADV
SMGLDIAETDKEYVVKAELPGVKKEDIKVTFQEGILNIAAERKCEEVKED
ERTQRHYSDFAYGKVSRSLRVPDAAEKDQVDAHLEDGVLTVKIAKGEHSK
PKEIEVK*
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mRNA from alignment at chr8:358009..359173-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G01140.1 ID=NO08G01140.1|Name=NO08G01140.1|organism=Nannochloropsis oceanica|type=mRNA|length=1165bp|location=Sequence derived from alignment at chr8:358009..359173- (Nannochloropsis oceanica)
ACAAGCAGCTGGTACCACACTCTAAACCCCAATAAAATGTTACGATACTT
ATCCCGACCGCTTGTCCATGCTGCGCGCACAACGACCGCCGGTGCCCATG
CCCAGCCCCCTCTGGCCTTGCGTAGACTCAGCTCCCGCTCTATCGGCCGC
TCGGTAGCCGGACGGCAAGGTGGCGGTGGTAGCACTGGCCAAGTGATGCC
TCGTGGACAAAGTGGTCCTCCTTTAGCTAGCCTTGGGCGATTTTTTGACG
ATTTCGGAATGGACGTGTTTAATGATCCCTTCTTCCGCCCTTTTCTGGCG
CGCGGGCCAGGCAGCTCTTTGGAGGCAGCAGACGTTTCTATGGGACTGGA
CATTGCGGAGACGGATAAGGAGTACGTGGTCAAAGCTGAGCTTCCCGGGG
TCAAGAAGGAGGATATCAAGGTGACCTTCCAGGAAGGCATCCTGAACATC
GCGGCGGAACGCAAGTGCGAGGAAGTGAAGGAGGACGAGCGCACCCAGCG
CCACTACTCAGACTTTGCCTACGGGAAGGTGTCTCGCTCCCTGCGCGTGC
CGGACGCTGCGGAGAAGGATCAAGTGGATGCACATTTAGAGGATGGGGTG
CTGACGGTTAAAATTGCCAAGGGGGAGCACTCGAAACCGAAGGAGATCGA
AGTCAAGTGAATCGAGAAGAACAAGGGATGGAAGGGAGGAGGGAATGAGG
GAAGGGAGAGAGGGAGTGAGATTGGTAAAAGGAAAGGAAAGATAATAAAT
ATGGAGTAATCGGGAGGTGATAAAAAAGGACGGTGGGCGAAGAAGATGAT
TATGTGCAGCGAGAGAGGTGAATATGAGGATCGAGAGAAACCAAAGGAGG
AGCAGCGCCCGCTGCGGCATGACAAGCTGCATTGGGAGACATGAGATTGC
TGCAAAAAGAGAGAAACGTGGATGTCCTCACGGTACCAAAGAAAGACGAC
AACACATACGTAAACAAGCACAGAATGAGCGGCAGTAAGAAGGGCGTGCC
AAATGTAAGATGGAAGAATTAGGAACAGAATGCGAAGAGGCCGCCCATGA
ACACACACAAACCATCCCACACACGAACCCTCCCGGAACTAGGAAAGGAA
GAATCTAACAGAGAAAAGGAAGATTTGTTGTCTAAAAGACATGCAGACAC
ACACAGACACGAGCG
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Coding sequence (CDS) from alignment at chr8:358009..359173-

>NO08G01140.1 ID=NO08G01140.1|Name=NO08G01140.1|organism=Nannochloropsis oceanica|type=CDS|length=624bp|location=Sequence derived from alignment at chr8:358009..359173- (Nannochloropsis oceanica)
ATGTTACGATACTTATCCCGACCGCTTGTCCATGCTGCGCGCACAACGAC
CGCCGGTGCCCATGCCCAGCCCCCTCTGGCCTTGCGTAGACTCAGCTCCC
GCTCTATCGGCCGCTCGGTAGCCGGACGGCAAGGTGGCGGTGGTAGCACT
GGCCAAGTGATGCCTCGTGGACAAAGTGGTCCTCCTTTAGCTAGCCTTGG
GCGATTTTTTGACGATTTCGGAATGGACGTGTTTAATGATCCCTTCTTCC
GCCCTTTTCTGGCGCGCGGGCCAGGCAGCTCTTTGGAGGCAGCAGACGTT
TCTATGGGACTGGACATTGCGGAGACGGATAAGGAGTACGTGGTCAAAGC
TGAGCTTCCCGGGGTCAAGAAGGAGGATATCAAGGTGACCTTCCAGGAAG
GCATCCTGAACATCGCGGCGGAACGCAAGTGCGAGGAAGTGAAGGAGGAC
GAGCGCACCCAGCGCCACTACTCAGACTTTGCCTACGGGAAGGTGTCTCG
CTCCCTGCGCGTGCCGGACGCTGCGGAGAAGGATCAAGTGGATGCACATT
TAGAGGATGGGGTGCTGACGGTTAAAATTGCCAAGGGGGAGCACTCGAAA
CCGAAGGAGATCGAAGTCAAGTGA
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Synonyms
Publications