NO08G01060, NO08G01060 (gene) Nannochloropsis oceanica

Overview
NameNO08G01060
Unique NameNO08G01060
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3297
Alignment locationchr8:334753..338049 +

Link to JBrowse

Properties
Property NameValue
DescriptionArmadillo-like helical
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:334753..338049 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Vocabulary: INTERPRO
TermDefinition
IPR016024ARM-type_fold
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO08G01060 vs. NCBI_GenBank
Match: EWM26646.1 (Armadillo-like helical [Nannochloropsis gaditana])

HSP 1 Score: 814.3 bits (2102), Expect = 2.800e-232
Identity = 419/615 (68.13%), Postives = 487/615 (79.19%), Query Frame = 0 
Query:   69 HATYETIGSRRTIGHLAVAPFLIGTLCWSTYFYHQRANQDFVMAAGVHSEEAGGTKTQVMGLFSLFKYLEISTDGPRLDLSPLAQMIDWRGLVDLAPTQAFLGVVYYCWSSLLHGMDNTVALFPSMDIKPKLVRLGVLEKLEEGLGSENPTVRLCAAYVVNRMVRNTHVARMVAARPVIVQGIVQMLEEEVVVEGGRFVGFVHSESSASAEVFVTLLETVNNVVEAVVDKDIVLLIGASGGHHPLVGSRPDAVLQLLPSSLISKASLMLRHLELCDEHVGNASGLFNDPHMSIYSKFFPHRVDDQVRRRMREVEAEVTRFLGAISKEGGACERLLLQREVLAGLVPLARTEGRNASAFVHAVEGVHNILDLYEMVMEREGXXXXXXXXXXXXXXHSIGSSGNDGG-----------------TRARQXXXXXXXXXXXXXXXXXLPETSLLLPSHLTSRALVDAHATIACRDEGTLGGPFARLHSVYAMRCYISSMACLVAGGLYGILRSAAAFPLVKPMYAYSVNGMGAVLLNAGYGTYGMRNWLKQHTYIEDDETNALWTWGTAVVDVAVVTTIVRRHPYALLPMCAVNYLGFNSSPGTGMKRLDGMDSFFSL 667
            H TYE+ G+ RT+GHL VAPFL+GTLCWST+FY + AN D V AAG +++EAGGT++Q++GLFS+FKYLEISTDGPRLDLSPLA ++DWRGL+ LAPTQ+ LG+VY+ WSSLLHG+DNTVA FPS+DIKPKLVRLGVL KLEEGL SE+PTVRLCAAYVVNR+VRN HVARMVAARPVIVQG+V MLEEE++VEGGRF GF HS  +ASAEVFVTLLET+NN+VE VV+K+ V+LIG SGGH P++G+RPD VL L+  SL+ KASLMLR L+LCDEHVGNA+GLF D  MSIY+KFFP RVDDQVRRRMREVEAEV RFLG ISK+  ACE LLL+R+VLAGLVPLAR EGRNASAFVHAVE VHN+LD Y  V E+                HS+ S+G + G                   A +                    +SLLLPSHLT  A+ DA  ++A R+EGTLG PFARL SVYAMRCYISSMACLV GGLYG++RSAA+FPLV P+ AYSVNG+GAV+LNAGYGTYG+RNWLKQ+TY+E+ E+ A WT   AVVDV VVT IVRRHPYALLPM AVNY GFNSSPGTGMKRLDGMD+FF+L
Sbjct:   69 HGTYESSGT-RTVGHLMVAPFLLGTLCWSTFFYQKHANGDLVAAAG-YNKEAGGTRSQILGLFSMFKYLEISTDGPRLDLSPLAALVDWRGLMALAPTQSTLGLVYFVWSSLLHGVDNTVAFFPSLDIKPKLVRLGVLSKLEEGLQSEDPTVRLCAAYVVNRLVRNAHVARMVAARPVIVQGLVDMLEEEMLVEGGRFQGFGHSAGNASAEVFVTLLETLNNLVEGVVNKEAVILIGVSGGHDPVLGARPDDVLPLITPSLVHKASLMLRLLDLCDEHVGNAAGLFEDHRMSIYAKFFPGRVDDQVRRRMREVEAEVARFLGGISKDAKACETLLLERDVLAGLVPLARAEGRNASAFVHAVEAVHNVLDRYWTVKEQ-----------GVKERHSLPSAGVERGGLSDESAEESAVKKCATPWATRREASAVDRCLGQGTPSFFSSSSLLLPSHLTDCAIADAVESVAGREEGTLGRPFARLRSVYAMRCYISSMACLVVGGLYGVMRSAASFPLVPPVIAYSVNGIGAVMLNAGYGTYGLRNWLKQNTYVEESESFAAWTSAQAVVDVGVVTAIVRRHPYALLPMVAVNYFGFNSSPGTGMKRLDGMDAFFTL 670
The following BLAST results are available for this feature:
BLAST of NO08G01060 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26646.12.800e-23268.13Armadillo-like helical [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL109nonsL109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR083ncniR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR141ngnoR141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008947NSK008947Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO08G01060.1NO08G01060.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582113gene_3435Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100001g15gene3943Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO08G01060.1NO08G01060.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO08G01060 ID=NO08G01060|Name=NO08G01060|organism=Nannochloropsis oceanica|type=gene|length=3297bp
GGTCCTCCTCCAATGCCTTGCCCATGCGAACACACACAGTCTCTTGTAAG
GGCAGCCTGGATCTCGAGCAATGTCCCTTTCCATGACTCTGCAAAACTGG
AGCCGTTAAGGTTCGCTATTGTCTGCTGCAAACAACTCCATCTTGCCATA
CAATGCACGCACATTCGTCACACGACACTCCCCCAAAACATCCACAGGCC
ACGGGCGCCACGGGCAGGAAGGGCTGCCATAAGGAGCCATTGCCTTCCCT
GTTTTCCTGAATTCCCTCCTGCCTACCCCAAGGTCGCACACCTCACCCCC
TGAGCTGCTTTGCTTGTCAGCACGCTGACACGGCCACCTCCCGCCCCCCC
TCTCCCTTCAAAAGCGGCACGACGCCCATCCGCTATACTTACGATCATGC
TGGGCCGCCGTCTCATCACCTCCATAGGATCGGACATGCGTCTATGTCTC
CGCTTGCCCAGGACTGCCACAACCGCCACTGCCAGCCGCCTGAGGACTTC
CGCTGCCCCCCACAAACTCGAATCGGTTGGCGGCAAAAGCCTCCAACCCC
TCCAGCCCCGCCTTCCCATTCTCCTCTATACATCAACAAACCGCGTCGCC
CACGCCACGTACGAAACCATCGGCTCTCGCCGCACAATCGGTCACCTGGC
CGTTGCGCCTTTCCTTATTGGCACGTTGTGTTGGAGCACGTACTTCTATC
ACCAACGGGCCAACCAAGACTTTGTCATGGCCGCGGGCGTCCACAGCGAA
GAGGCGGGTGGGACCAAAACGCAGGTGATGGGACTATTTTCGCTGTTCAA
GTACTTGGAGATCAGTACGGATGGGCCGCGGTTGGACTTGTCCCCATTGG
CACAGATGATTGACTGGAGGGGCCTCGTGGATTTGGCTCCCACCCAGGCA
TTTTTGGGTGTCGTGTACTATTGCTGGTCGAGCCTGCTGCACGGGATGGA
CAATACGGTGGCCTTGTTTCCATCGATGGACATAAAGCCTAAGCTAGTGA
GGTTGGGCGTTCTGGAAAAGTTGGAGGAGGGGCTTGGGAGTGAGAATCCG
ACCGTGCGCTTGTGTGCGGCGTACGTGGTGAATCGGATGGTCAGGAATAC
TCATGTGGCAAGGATGGTGGCGGCGCGACCTGTGATTGTCCAGGGAATCG
TACAGATGCTCGAGGAGGAGGTGGTGGTAGAGGGTGGGAGATTTGTGGGA
TTTGTCCACTCGGAGAGCTCAGCCAGCGCGGAAGTGTTTGTGACGTTGCT
TGAGACGGTGAACAATGTGGTGGAGGCGGTGGTTGATAAGgtaggaaggg
gggtagagaggaatagaaggaggagacagaggcggtatggtttgattatt
tgtacctttctcttgtcgtcggctctttatcctgcttccccaaccaccct
ctagctcgctttacccattttcagcacccacccatcctccctcccttccc
tcctcccatcccaccctccctcacagGATATAGTCCTTCTCATCGGCGCT
TCCGGCGGGCACCACCCGCTAGTCGGCTCCCGGCCTGATGCGGTCCTGCA
GCTCCTCCCTTCCTCCCTCATCTCCAAAGCAAGCTTGATGCTGCGGCATT
TGGAATTATGTGACGAGCACGTGGGCAACGCCAGTGGCTTGTTCAATGAC
CCCCATATGTCGATTTATTCCAAATTCTTCCCTCACCGTGTCGACGACCA
GGTTCGGCGAAGGATGAGAGAGGTAGAGGCCGAAGTGACTCGATTTTTAG
GGGCCATTTCCAAAGAGGGAGGGGCGTGTGAGAGGCTGCTACTGCAGAGG
GAGGTGCTGGCCGGCCTTGTGCCGTTGGCGAGGACGGAGGGGAGGAATGC
GAGCGCCTTTGTGCACGCTGTGGAGGGAGTGCATAATATTTTAGACCTAT
ATGAGATGGTGATGGAAAGGGAGGGAAGGAGAGAGGAAGGGAGGGAGGAA
GGGAGAGAGAGAGGCTTTCACAGCATCGGCAGCAGTGGCAACGACGGCGG
GACTCGGGCTAGGCAGGTCCATCACGACCTGCAGCAACAGCAACAGCAAC
AGCAACAGCAACACCAATTGCCGGAGACCTCCCTCCTTCTCCCCTCCCAC
CTCACGTCTCGTGCGCTGGTTGACGCCCATGCCACGATCGCCTGCCGAGA
CGAAGGCACCTTGGGCGGGCCTTTCGCGCGTCTTCATTCCGTCTACGCAA
TGCGGTGCTATATTTCTTCTATGGCCTGTCTCGTCGCCGGGGGTTTATAC
GGTATTCTTCGGTCGGCCGCTGCCTTCCCTCTTGTCAAACCCATGTATGC
TTACAGTGTGAATGGCATGGGCGCCGTTTTGTTGAACGCGGGCTATGGCA
CTTATGGGATGAGGAACTGGCTGAAGCAGCATACGTATATTGAGGATGAC
GAGACGAATGCCCTCTGGACGTGGGGGACAGCAGTAGTGGATGTGGCGGT
GGTGACGACGATCGTGAGGAGGCATCCATACGCCTTGTTGCCCATGTGCG
CGGTGAATTATTTGGGATTCAATTCGAGCCCGGGCACAGGGATGAAGCGG
CTTGATGGTATGGATTCCTTTTTTTCATTGGGGTGAAGAGAGGAGGAAGA
TAATGGAAGGAAGAAGGGCTAGGGAAGGAAATGAGTAGATTCGAAAATTG
TTCGGAGTCACCGCAAGAGATGCCAGTGTAGAGAAGGGCGGCAGCATGGA
TCGAAACAGGAGGAGCTAGCCGACGGCAAGGACGACACAAGATGTCCCCC
CCACACTATAGGGCTTCGGTTCTATGCTAGCTTGTTGCAGTATGTTCAAA
GATTAGGGAGATTTGTGTAACAGGAGTGAACGGGAGTGAGACAGCGAGAG
AGATTGGGTGCCGGAATGCGTTTGCGTGTGCATGTTCGTGAGCAGTAAAA
TAATTGGTGAGGGGAATACAACCACAATAAAGTATGCGCGGATAAAAGAC
AGTCAAGCAGAGGTAAAGATAGAGAGGATGAGATGAAAACAACCAAACCA
GAAAACAAAAGTCCGGATCAGCCTAGGAAATAATACTCGTGGCAGCAACG
AGAAGCGGAAAAAAGCACAGCAGCAGTGAGACTTGGATAAAGTGAAGGCG
GAGGGACGCGGAGAGGATACCTATCTGAAGCAGCCGCTCCGGTGGTGGTC
AGGAAACGACCACAATAATAGAGTATTACCAAAAAACCCATTTTTGAAGC
TTTCGTGTATGCAGAGAAAAAGAGAGTGTGAGCTCATTCCCGCACGCGAC
ATGATGAATCGATAAAACAAAGGACCGACAAATCAACCCAGCCTTCG
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protein sequence of NO08G01060.1

>NO08G01060.1-protein ID=NO08G01060.1-protein|Name=NO08G01060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=668bp
MLGRRLITSIGSDMRLCLRLPRTATTATASRLRTSAAPHKLESVGGKSLQ
PLQPRLPILLYTSTNRVAHATYETIGSRRTIGHLAVAPFLIGTLCWSTYF
YHQRANQDFVMAAGVHSEEAGGTKTQVMGLFSLFKYLEISTDGPRLDLSP
LAQMIDWRGLVDLAPTQAFLGVVYYCWSSLLHGMDNTVALFPSMDIKPKL
VRLGVLEKLEEGLGSENPTVRLCAAYVVNRMVRNTHVARMVAARPVIVQG
IVQMLEEEVVVEGGRFVGFVHSESSASAEVFVTLLETVNNVVEAVVDKDI
VLLIGASGGHHPLVGSRPDAVLQLLPSSLISKASLMLRHLELCDEHVGNA
SGLFNDPHMSIYSKFFPHRVDDQVRRRMREVEAEVTRFLGAISKEGGACE
RLLLQREVLAGLVPLARTEGRNASAFVHAVEGVHNILDLYEMVMEREGRR
EEGREEGRERGFHSIGSSGNDGGTRARQVHHDLQQQQQQQQQQHQLPETS
LLLPSHLTSRALVDAHATIACRDEGTLGGPFARLHSVYAMRCYISSMACL
VAGGLYGILRSAAAFPLVKPMYAYSVNGMGAVLLNAGYGTYGMRNWLKQH
TYIEDDETNALWTWGTAVVDVAVVTTIVRRHPYALLPMCAVNYLGFNSSP
GTGMKRLDGMDSFFSLG*
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Synonyms
Publications