NO08G01000, NO08G01000 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO08G01000
Unique Name	NO08G01000
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2031
Alignment location	chr8:321409..323439 -

Link to JBrowse

Properties


Property Name	Value
Description	Dynein light intermediate chain

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr8	genome	chr8:321409..323439 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005868	cytoplasmic dynein complex
GO:0005868	cytoplasmic dynein complex

Vocabulary: **Molecular Function**
Term	Definition
GO:0003777	microtubule motor activity
GO:0003777	microtubule motor activity

Vocabulary: **Biological Process**
Term	Definition
GO:0007018	microtubule-based movement
GO:0007018	microtubule-based movement

Vocabulary: **INTERPRO**
Term	Definition
IPR008467	Dynein1_light_intermed_chain
IPR022780	Dynein_light_int_chain

Homology

[Close]

BLAST of NO08G01000 vs. NCBI_GenBank
Match: EWM26714.1 (dynein light intermediate chain [Nannochloropsis gaditana])

HSP 1 Score: 291.6 bits (745), Expect = 6.200e-75
Identity = 199/499 (39.88%), Postives = 265/499 (53.11%), Query Frame = 0

Query:   14 KQQQEQHWAALLSEAAANSKGQPKFNSGTVLFLGD-AVGKTRLVKRFQKIPKRADKLAFMVGERMEAGRATTEEEKLECLEAGEEASSL------PLLSYSYFDAPGEARDEGSSSGSNIGRRGSVRTSERGMSPDTRLRRNNDIESGGSYDDDDMDSAARINIWSLSDPSYKTLLQVAFDDSQGDCCDKEAGGNEADQSTKTEMARTG-RKAGARAKALQRTVCMIGVDLTRPWTCEAALQQWVEVLKAVLAE---AGCSEGDRGXXXXXXXXXXXXXXXXXXXLVAYLTKCYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKDVVKEVPVFRVHKSSPLRSRTVSSRCSSPSS-LPPGVLTENLGVPLIVVGLQADLVHAPDSFEDEQRSQFLQQYLRSFCLKHGAALVYVSATRDTNCLLLQRYILHRLYPELFPFSLHAQARRRESLFVPAGWDSEEIVRKLLSPQSLPWPTSATFTQILVPPKGVR 501
            +++ E  W  LL+EAA +   Q  F  GT+LFLGD AVGKTRL+ RF       ++ A   G    A     EEEK +  E G+E S         LLSY++F A      +      + G  G       G  P    +   + +     D+++MD+ AR+N+WSLSDP+ K LL VA DD       + A    ++  T      +        A+ LQRT+CMI +DLTRPW CE+AL++WV VL++VL E   AGC +G+                     LVAYL++CY                                       + +   VFR+++      R +SS   + S+ LP GVL ENLGVPL+VVGL+ADL   PDS++D  RS F QQYLR  CLK+GA+LVY SA+   NCLLLQRY+LHRLYPE F F L  QA R  + FVP+GWD+ E+V+KLLSPQ++PWP S TF++I VPPKG R
Sbjct:   11 QRETELIWGPLLAEAARSE--QSNFTPGTILFLGDAAVGKTRLIDRFITSYDALERQAAATGRNFIA-----EEEKED--EEGQEGSGALSSHDHSLLSYAFFPAIDPVGCKAGGQSWDNGTVGRSSDCLPGRCPAGASKGLAEDDQDAGVDENEMDAGARVNVWSLSDPALKDLLHVALDDPG---VRRRAASIRSEVPTDPRFDTSSLNSKSTPAQTLQRTICMIAIDLTRPWACESALERWVGVLRSVLGEKARAGCHKGEE---------EGEEERVRKARLVAYLSRCYQGEDMDRVWLERGELKEEDEGG----------------GLEEPKVVFRINRMESSGGRPLSSPQPARSTPLPAGVLEENLGVPLVVVGLKADLAPVPDSYDDGLRSLFFQQYLRRVCLKYGASLVYTSASNGDNCLLLQRYLLHRLYPEHFSFLLPVQAPRALT-FVPSGWDTPELVQKLLSPQAVPWPPSLTFSEIFVPPKGAR 471

[Close]

BLAST of NO08G01000 vs. NCBI_GenBank
Match: CBJ30850.1 (D1LIC, cytoplasmic dynein 1 light intermediate chain [Ectocarpus siliculosus])

HSP 1 Score: 139.0 bits (349), Expect = 5.100e-29
Identity = 68/133 (51.13%), Postives = 91/133 (68.42%), Query Frame = 0

Query:  366 LPPGVLTENLGVPLIVVGLQADLVHAPDSFEDEQRSQFLQQYLRSFCLKHGAALVYVSATRDTNCLLLQRYILHRLYPELFPFSLHAQARRRESLFVPAGWDSEEIVRKLLSPQSLPWPTSATFTQILVPPKG 499
            L  GVL  NLGVP++VVG +AD + + ++FE +QR  F+QQ LR FCLK+GAALVY SA    NC LL RY+L  +YP+ F FS   Q    ++ F+PAGWDS+ ++  LLSP   PW  +ATF +++VPP G
Sbjct:  267 LGDGVLERNLGVPMVVVGCKADSLQS-ETFEQQQRLHFIQQSLRRFCLKYGAALVYTSAKDSVNCSLLHRYLLSCVYPDAFSFSEEGQT--SDAAFIPAGWDSKRLIDGLLSPDKTPWGPNATFAEVVVPPPG 396

[Close]

BLAST of NO08G01000 vs. NCBI_GenBank
Match: XP_009524077.1 (dynein [Phytophthora sojae] >EGZ21360.1 dynein [Phytophthora sojae])

HSP 1 Score: 103.6 bits (257), Expect = 2.400e-18
Identity = 91/345 (26.38%), Postives = 141/345 (40.87%), Query Frame = 0

Query:  152 ESGGSYDDDDMDSAARINIWSLSDPSYKTLLQVAFDDSQGDCCDKEAGGNEADQSTKTEMARTGRKAGARAKALQRTVCMIGVDLTRPWTCEAALQQWVEVLKAVLAEAGCSEGDRGXXXXXXXXXXXXXXXXXXXLVAYLTKCYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKDVVKEVPVFRVHKSSPLRSRTVSSRCSSPSSLPPGVLTENLGVPLIVVGLQADLVHAPDSFEDEQRSQFLQQYLRSFCLKHGAALVYVSATRDTNCLLLQRYILHRLYPELFPFSLHAQARRRESLFVPAGWDSEEIVRKLLSPQSLPWPTSATFTQILVPP 497
            ESGG   +D M   A+I  WSL+D + K L+++A                                   + + LQ+TV  I +DL+RPWT +++L+QW+  L+  L E                            ++AY                                               E P   V  S+P    T     S+   +  GVL++NLGVPL++V  +ADL       E+  +  +++  LR F +++GA++V+ SA   +N   L++YILHR YP  F F+   Q     SLF+P+G+DS E+V + L      WPT   F +I+  P
Sbjct:   68 ESGGDASEDVM---AQIGTWSLNDLNLKDLIKIA----------------------------------VKPRTLQKTVVAIVLDLSRPWTIKSSLEQWLSALEGQLLEQ--------INQLAPEARNELYAAIKQHILAY-----------------------------------------------EDPT--VDHSAPTPMDT-----STNEFMEEGVLSKNLGVPLVLVVAKADL-----RPENSVKMDYIEYTLRQFAIRYGASVVFTSAKTGSNVDTLRKYILHRAYPSQFKFTEPPQLVDHNSLFIPSGYDSFELVNQSLVGSQARWPTDKPFEKIVPAP 308

[Close]

BLAST of NO08G01000 vs. NCBI_GenBank
Match: POM59694.1 (Dynein 1 light intermediate chain [Phytophthora palmivora var. palmivora] >POM81387.1 Dynein 1 light intermediate chain [Phytophthora palmivora var. palmivora])

HSP 1 Score: 103.2 bits (256), Expect = 3.100e-18
Identity = 91/345 (26.38%), Postives = 141/345 (40.87%), Query Frame = 0

Query:  152 ESGGSYDDDDMDSAARINIWSLSDPSYKTLLQVAFDDSQGDCCDKEAGGNEADQSTKTEMARTGRKAGARAKALQRTVCMIGVDLTRPWTCEAALQQWVEVLKAVLAEAGCSEGDRGXXXXXXXXXXXXXXXXXXXLVAYLTKCYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKDVVKEVPVFRVHKSSPLRSRTVSSRCSSPSSLPPGVLTENLGVPLIVVGLQADLVHAPDSFEDEQRSQFLQQYLRSFCLKHGAALVYVSATRDTNCLLLQRYILHRLYPELFPFSLHAQARRRESLFVPAGWDSEEIVRKLLSPQSLPWPTSATFTQILVPP 497
            ESGG   +D M   A I  WSL+D S K L+++A                                   + + LQ+TV  I +DL+RPWT +++L+QW+  L+  L E                            L+A  T+                                       K  +       V  S+P    T     S+   +  GVL++NLGVPL++V  +ADL       E+  +  +++  LR F +++GA++V+ SA   +N   L++YILHR YP  F F+   Q     S+F+P+G+DS E+V + L      WPT   F +I+  P
Sbjct:   68 ESGGDASEDVM---AHIGTWSLNDLSLKDLIKIA----------------------------------VKPQTLQKTVVAIVLDLSRPWTIKSSLEQWLSALEGQLLE-------------------------QINLLAPETR--------------------------------NELYAAIKQHILAYEDPSVDHSAPTPMDT-----STNEFMQEGVLSKNLGVPLMIVVAKADL-----RPENSVKMDYIEYTLRQFAIRYGASVVFTSAKTGSNVDTLRKYILHRAYPSQFKFAEPPQLVDHNSIFIPSGYDSFELVNQSLVGSQARWPTDKPFEKIVPAP 308

[Close]

BLAST of NO08G01000 vs. NCBI_GenBank
Match: XP_013419825.1 (cytoplasmic dynein 1 light intermediate chain 2 isoform X1 [Lingula anatina])

HSP 1 Score: 102.4 bits (254), Expect = 5.300e-18
Identity = 56/136 (41.18%), Postives = 79/136 (58.09%), Query Frame = 0

Query:  337 VKEVPVFRVHKSSPLRSRTVSSRCSSPSSLPPGVLTENLGVPLIVVGLQADLVHAPDSFED--EQRSQFLQQYLRSFCLKHGAALVYVSATRDTNCLLLQRYILHRLYPELFPFSLHAQARRRESLFVPAGWDSEE 471
            +K  P    +   P  S T   R   P  L    LT NLG+P++VV  ++D +   +   D  E+   F+QQ++R FCL +GAAL YVS   D NC LL +Y++HR+Y   FPFS+      R+S+FVPAGWD+E+
Sbjct:  184 IKSPPRRDFNPLHPSASSTDEERVLLP--LGESTLTNNLGIPIVVVVTKSDAISTLEKENDYREEHFDFIQQHIRKFCLNYGAALAYVSVKEDKNCELLYKYLVHRIYG--FPFSVPGYVVERDSVFVPAGWDNEK 315

[Close]

BLAST of NO08G01000 vs. NCBI_GenBank
Match: XP_023933298.1 (cytoplasmic dynein 1 light intermediate chain 2 isoform X2 [Lingula anatina])

HSP 1 Score: 102.4 bits (254), Expect = 5.300e-18
Identity = 56/136 (41.18%), Postives = 79/136 (58.09%), Query Frame = 0

Query:  337 VKEVPVFRVHKSSPLRSRTVSSRCSSPSSLPPGVLTENLGVPLIVVGLQADLVHAPDSFED--EQRSQFLQQYLRSFCLKHGAALVYVSATRDTNCLLLQRYILHRLYPELFPFSLHAQARRRESLFVPAGWDSEE 471
            +K  P    +   P  S T   R   P  L    LT NLG+P++VV  ++D +   +   D  E+   F+QQ++R FCL +GAAL YVS   D NC LL +Y++HR+Y   FPFS+      R+S+FVPAGWD+E+
Sbjct:  184 IKSPPRRDFNPLHPSASSTDEERVLLP--LGESTLTNNLGIPIVVVVTKSDAISTLEKENDYREEHFDFIQQHIRKFCLNYGAALAYVSVKEDKNCELLYKYLVHRIYG--FPFSVPGYVVERDSVFVPAGWDNEK 315

[Close]

BLAST of NO08G01000 vs. NCBI_GenBank
Match: XP_008891035.1 (hypothetical protein PPTG_01179 [Phytophthora parasitica INRA-310] >ETI55996.1 hypothetical protein F443_01371 [Phytophthora parasitica P1569] >ETK95808.1 hypothetical protein L915_01302 [Phytophthora parasitica] >ETL49191.1 hypothetical protein L916_01282 [Phytophthora parasitica] >ETM02247.1 hypothetical protein L917_01262 [Phytophthora parasitica] >ETM55492.1 hypothetical protein L914_01291 [Phytophthora parasitica] >ETN25043.1 hypothetical protein PPTG_01179 [Phytophthora parasitica INRA-310] >ETO84749.1 hypothetical protein F444_01372 [Phytophthora parasitica P1976] >ETP53824.1 hypothetical protein F442_01309 [Phytophthora parasitica P10297] >KUF76599.1 Cytoplasmic dynein 1 light intermediate chain 2 [Phytophthora nicotianae])

HSP 1 Score: 102.1 bits (253), Expect = 6.900e-18
Identity = 90/345 (26.09%), Postives = 140/345 (40.58%), Query Frame = 0

Query:  152 ESGGSYDDDDMDSAARINIWSLSDPSYKTLLQVAFDDSQGDCCDKEAGGNEADQSTKTEMARTGRKAGARAKALQRTVCMIGVDLTRPWTCEAALQQWVEVLKAVLAEAGCSEGDRGXXXXXXXXXXXXXXXXXXXLVAYLTKCYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKDVVKEVPVFRVHKSSPLRSRTVSSRCSSPSSLPPGVLTENLGVPLIVVGLQADLVHAPDSFEDEQRSQFLQQYLRSFCLKHGAALVYVSATRDTNCLLLQRYILHRLYPELFPFSLHAQARRRESLFVPAGWDSEEIVRKLLSPQSLPWPTSATFTQILVPP 497
            ESGG   +D M   A I  WSL+D + K L+++A                                   + + LQ+TV  I +DL+RPWT +++L+QW+  L+  L E                            ++AY                                               E P   V  S+P    T     S+   +  GVL++NLGVPL++V  +ADL       E+  +  +++  LR F +++GA++V+ SA   +N   L++YILHR YP  F F+   Q     S+F+P+G+DS E+V + L      WPT   F +I+  P
Sbjct:   78 ESGGDASEDVM---AHIGTWSLNDLNLKDLIKIA----------------------------------VKPQTLQKTVVAIVLDLSRPWTIKSSLEQWLSALEGQLLEQ--------INQLAPETRNELYGAIKQHILAY-----------------------------------------------EDP--SVDHSAPTPMDT-----STNEFMEEGVLSKNLGVPLVIVVAKADL-----RPENSVKMDYIEYTLRQFAIRYGASVVFTSAKTGSNVDTLRKYILHRAYPSQFKFTEPPQLVDHNSIFIPSGYDSFELVNQSLVGSQARWPTDKPFEKIVPAP 318

[Close]

BLAST of NO08G01000 vs. NCBI_GenBank
Match: XP_008891036.1 (hypothetical protein, variant [Phytophthora parasitica INRA-310] >ETI55997.1 hypothetical protein, variant [Phytophthora parasitica P1569] >ETK95809.1 hypothetical protein, variant [Phytophthora parasitica] >ETL49192.1 hypothetical protein, variant [Phytophthora parasitica] >ETM02248.1 hypothetical protein, variant [Phytophthora parasitica] >ETM55493.1 hypothetical protein, variant [Phytophthora parasitica] >ETN25044.1 hypothetical protein, variant [Phytophthora parasitica INRA-310] >ETO84750.1 hypothetical protein, variant [Phytophthora parasitica P1976] >ETP53825.1 hypothetical protein, variant [Phytophthora parasitica P10297])

HSP 1 Score: 102.1 bits (253), Expect = 6.900e-18
Identity = 90/345 (26.09%), Postives = 140/345 (40.58%), Query Frame = 0

Query:  152 ESGGSYDDDDMDSAARINIWSLSDPSYKTLLQVAFDDSQGDCCDKEAGGNEADQSTKTEMARTGRKAGARAKALQRTVCMIGVDLTRPWTCEAALQQWVEVLKAVLAEAGCSEGDRGXXXXXXXXXXXXXXXXXXXLVAYLTKCYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKDVVKEVPVFRVHKSSPLRSRTVSSRCSSPSSLPPGVLTENLGVPLIVVGLQADLVHAPDSFEDEQRSQFLQQYLRSFCLKHGAALVYVSATRDTNCLLLQRYILHRLYPELFPFSLHAQARRRESLFVPAGWDSEEIVRKLLSPQSLPWPTSATFTQILVPP 497
            ESGG   +D M   A I  WSL+D + K L+++A                                   + + LQ+TV  I +DL+RPWT +++L+QW+  L+  L E                            ++AY                                               E P   V  S+P    T     S+   +  GVL++NLGVPL++V  +ADL       E+  +  +++  LR F +++GA++V+ SA   +N   L++YILHR YP  F F+   Q     S+F+P+G+DS E+V + L      WPT   F +I+  P
Sbjct:   78 ESGGDASEDVM---AHIGTWSLNDLNLKDLIKIA----------------------------------VKPQTLQKTVVAIVLDLSRPWTIKSSLEQWLSALEGQLLEQ--------INQLAPETRNELYGAIKQHILAY-----------------------------------------------EDP--SVDHSAPTPMDT-----STNEFMEEGVLSKNLGVPLVIVVAKADL-----RPENSVKMDYIEYTLRQFAIRYGASVVFTSAKTGSNVDTLRKYILHRAYPSQFKFTEPPQLVDHNSIFIPSGYDSFELVNQSLVGSQARWPTDKPFEKIVPAP 318

[Close]

BLAST of NO08G01000 vs. NCBI_GenBank
Match: KUF76608.1 (Cytoplasmic dynein 1 light intermediate chain 2 [Phytophthora nicotianae])

HSP 1 Score: 102.1 bits (253), Expect = 6.900e-18
Identity = 90/345 (26.09%), Postives = 140/345 (40.58%), Query Frame = 0

Query:  152 ESGGSYDDDDMDSAARINIWSLSDPSYKTLLQVAFDDSQGDCCDKEAGGNEADQSTKTEMARTGRKAGARAKALQRTVCMIGVDLTRPWTCEAALQQWVEVLKAVLAEAGCSEGDRGXXXXXXXXXXXXXXXXXXXLVAYLTKCYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKDVVKEVPVFRVHKSSPLRSRTVSSRCSSPSSLPPGVLTENLGVPLIVVGLQADLVHAPDSFEDEQRSQFLQQYLRSFCLKHGAALVYVSATRDTNCLLLQRYILHRLYPELFPFSLHAQARRRESLFVPAGWDSEEIVRKLLSPQSLPWPTSATFTQILVPP 497
            ESGG   +D M   A I  WSL+D + K L+++A                                   + + LQ+TV  I +DL+RPWT +++L+QW+  L+  L E                            ++AY                                               E P   V  S+P    T     S+   +  GVL++NLGVPL++V  +ADL       E+  +  +++  LR F +++GA++V+ SA   +N   L++YILHR YP  F F+   Q     S+F+P+G+DS E+V + L      WPT   F +I+  P
Sbjct:   78 ESGGDASEDVM---AHIGTWSLNDLNLKDLIKIA----------------------------------VKPQTLQKTVVAIVLDLSRPWTIKSSLEQWLSALEGQLLEQ--------INQLAPETRNELYGAIKQHILAY-----------------------------------------------EDP--SVDHSAPTPMDT-----STNEFMEEGVLSKNLGVPLVIVVAKADL-----RPENSVKMDYIEYTLRQFAIRYGASVVFTSAKTGSNVDTLRKYILHRAYPSQFKFTEPPQLVDHNSIFIPSGYDSFELVNQSLVGSQARWPTDKPFEKIVPAP 318

[Close]

BLAST of NO08G01000 vs. NCBI_GenBank
Match: ETP25811.1 (hypothetical protein F441_01348 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 99.8 bits (247), Expect = 3.400e-17
Identity = 89/345 (25.80%), Postives = 139/345 (40.29%), Query Frame = 0

Query:  152 ESGGSYDDDDMDSAARINIWSLSDPSYKTLLQVAFDDSQGDCCDKEAGGNEADQSTKTEMARTGRKAGARAKALQRTVCMIGVDLTRPWTCEAALQQWVEVLKAVLAEAGCSEGDRGXXXXXXXXXXXXXXXXXXXLVAYLTKCYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKDVVKEVPVFRVHKSSPLRSRTVSSRCSSPSSLPPGVLTENLGVPLIVVGLQADLVHAPDSFEDEQRSQFLQQYLRSFCLKHGAALVYVSATRDTNCLLLQRYILHRLYPELFPFSLHAQARRRESLFVPAGWDSEEIVRKLLSPQSLPWPTSATFTQILVPP 497
            ESGG   +D M   A I  WSL+D + K L+++A                                   + + LQ+TV  I +DL+RPW  +++L+QW+  L+  L E                            ++AY                                               E P   V  S+P    T     S+   +  GVL++NLGVPL++V  +ADL       E+  +  +++  LR F +++GA++V+ SA   +N   L++YILHR YP  F F+   Q     S+F+P+G+DS E+V + L      WPT   F +I+  P
Sbjct:   78 ESGGDASEDVM---AHIGTWSLNDLNLKDLIKIA----------------------------------VKPQTLQKTVVAIVLDLSRPWMIKSSLEQWLSALEGQLLEQ--------INQLAPETRNELYGAIKQHILAY-----------------------------------------------EDP--SVDHSAPTPMDT-----STNEFMEEGVLSKNLGVPLVIVVAKADL-----RPENSVKMDYIEYTLRQFAIRYGASVVFTSAKTGSNVDTLRKYILHRAYPSQFKFTEPPQLVDHNSIFIPSGYDSFELVNQSLVGSQARWPTDKPFEKIVPAP 318

The following BLAST results are available for this feature:

BLAST of NO08G01000 vs. NCBI_GenBank

BLAST of NO08G01000 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
EWM26714.1	6.200e-75	39.88	dynein light intermediate chain [Nannochloropsis g...	[more]
CBJ30850.1	5.100e-29	51.13	D1LIC, cytoplasmic dynein 1 light intermediate cha...	[more]
XP_009524077.1	2.400e-18	26.38	dynein [Phytophthora sojae] >EGZ21360.1 dynein [Ph...	[more]
POM59694.1	3.100e-18	26.38	Dynein 1 light intermediate chain [Phytophthora pa...	[more]
XP_013419825.1	5.300e-18	41.18	cytoplasmic dynein 1 light intermediate chain 2 is...	[more]
XP_023933298.1	5.300e-18	41.18	cytoplasmic dynein 1 light intermediate chain 2 is...	[more]
XP_008891035.1	6.900e-18	26.09	hypothetical protein PPTG_01179 [Phytophthora para...	[more]
XP_008891036.1	6.900e-18	26.09	hypothetical protein, variant [Phytophthora parasi...	[more]
KUF76608.1	6.900e-18	26.09	Cytoplasmic dynein 1 light intermediate chain 2 [P...	[more]
ETP25811.1	3.400e-17	25.80	hypothetical protein F441_01348 [Phytophthora para...	[more]

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Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL109	nonsL109	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR083	ncniR083	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR141	ngnoR141	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK008957	NSK008957	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO08G01000.1	NO08G01000.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|526031	gene_3429	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
D1LIC	gene3948	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO08G01000.1	NO08G01000.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO08G01000 ID=NO08G01000|Name=NO08G01000|organism=Nannochloropsis oceanica|type=gene|length=2031bp
ATGTCCAACTTGAGAGATGGCATCGGCAGGGTCCCGCGGAAGCAACAACA
AGAACAACATTGGGCGGCGCTGCTTTCCGAGGCCGCTGCCAACTCGAAAG
GCCAGCCAAAATTTAACTCTGGGACGGTCCTATTCTTGGGCGATGCGGTG
GGCAAAACCCGCCTGGTGAAACGTTTTCAAAAAATCCCTAAACGTGCAGA
TAAGCTGGCATTCATGGTGGGGGAGAGGATGGAGGCGGGGAGAGCTACAA
CTGAGGAGGAGAAGCTGGAGTGTCTTGAAGCCGGCGAAGAAGCGTCCAGT
CTGCCTCTGCTTTCCTACTCCTACTTTGATGCTCCTGGCGAGGCGCGGGA
TGAGGGAAGCAGTAGCGGCAGTAATATTGGTAGAAGGGGAAGCGTACGAA
CGAGTGAGCGTGGCATGTCTCCAGATACTCGCCTGCGACGTAATAACGAC
ATTGAATCGGGTGGCAGCTACGATGACGACGACATGGACTCTGCGGCGCG
CATAAATATATGGTCCCTCAGTGACCCCAGCTACAAAACTCTGCTACAAG
TGGCGTTTGATGATTCACAGGGGGATTGCTGCGACAAGGAAGCTGGGGGG
AATGAAGCCGACCAGAGCACAAAGACGGAGATGGCAAGGACGGGAAGGAA
AGCAGGCGCACGGGCAAAAGCCTTGCAACGCACTGTCTGCATGATCGGAG
TAGATTTGACCCGACCTTGGACATGTGAAGCAGCTCTGCAGCAATGGGTG
GAGGTTTTGAAAGCCGTGCTTGCCGAGGCGGGATGTAGTGAGGGAGACAG
AGGAGGAGGAGGGCAGGGAGATGGGCAGGAAGACGAGGAAGAAATCATGC
GCAAAGAAAGATTGGTGGCTTACCTCACCAAATGTTATGACGGTGGTGCA
ACGTCTAAGCAGTGGCATCAGCGGAAAAAAGAGCAACAAGAGGACAAGCA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGA
AAGATGTAGTCAAGGAAGTCCCTGTATTCCGAGTTCACAAATCATCGCCC
CTGAGAAGCAGAACTGTCTCCTCTCGCTGCTCCAGTCCTTCCTCCCTCCC
TCCCGGAGTCCTGACTGAGAACCTCGGCGTTCCTCTCATCGTCGTAGGCC
TCCAAGCCGATCTCGTCCACGCCCCCGACAGCTTCGAAGACGAGCAACGC
AGCCAGTTCCTCCAACAATACCTCCGTTCCTTTTGCCTTAAGCACGGTGC
GGCCCTCGTCTACGTCTCCGCCACCCGGGACACCAACTGCCTGCTCCTCC
AACGCTACATACTCCACCGCCTCTATCCGGAGCTTTTCCCATTCTCTCTC
CACGCACAAGCCCGTCGCCGAGAGTCCCTCTTCGTCCCTGCCGGATGGGA
TTCGGAAGAGATCGTACGGAAACTTTTGTCACCCCAGAGCTTGCCGTGGC
CCACATCTGCGACGTTCACTCAGATTTTGGTCCCGCCGAAAGGGGTGCGT
CTGCCACTCGTGGATGAGGAGGAAGAAGAGGAGGAAAAAGGAAAGGAGCA
GAACGACGTGAGTCCAACACGGGCATGGTTGGAGGAGCTCTTAATGCAGC
AGCAGCAGCAGCAGCAGCAGCAGATGCAGCAACTGGACGTAGCCACAGGG
AATAGTGAGGTTTTTGCAGGCTCTACAGCAACGACGCCGCGGGCATCTGG
GGGGGACAAGGGCAAGTCATCTTCTGGAAGAGCGGGCAAGGGAAGCAACA
GTAGCAGCAGCAGCAGTAGGAGCAACACCAGAAGCAGCAGTAGCACCAAC
AGCTCACGCTCTGGCACCAGGAAAACAAAGCCGACGTCATCAGTATCTTC
GGCGGTGGGCGCGGTGGCGACAAGCGATGGGGTTGAGGAAAGTGATGAGG
CACAAATTCGCAATTTCTTTGAAGGGCTTTTGGCCGGTGGCGGTGCCAGC
GGTGTCGGAAAGAAATGAATCACAAGAAGCGATAATAAAGTAAATAGACG
ATTGGAGAAGCCGCTAGATAAGTATCAAAAC

protein sequence of NO08G01000.1

>NO08G01000.1-protein ID=NO08G01000.1-protein|Name=NO08G01000.1|organism=Nannochloropsis oceanica|type=polypeptide|length=656bp
MSNLRDGIGRVPRKQQQEQHWAALLSEAAANSKGQPKFNSGTVLFLGDAV
GKTRLVKRFQKIPKRADKLAFMVGERMEAGRATTEEEKLECLEAGEEASS
LPLLSYSYFDAPGEARDEGSSSGSNIGRRGSVRTSERGMSPDTRLRRNND
IESGGSYDDDDMDSAARINIWSLSDPSYKTLLQVAFDDSQGDCCDKEAGG
NEADQSTKTEMARTGRKAGARAKALQRTVCMIGVDLTRPWTCEAALQQWV
EVLKAVLAEAGCSEGDRGGGGQGDGQEDEEEIMRKERLVAYLTKCYDGGA
TSKQWHQRKKEQQEDKQEEEEEEEEEEEEEEEGKDVVKEVPVFRVHKSSP
LRSRTVSSRCSSPSSLPPGVLTENLGVPLIVVGLQADLVHAPDSFEDEQR
SQFLQQYLRSFCLKHGAALVYVSATRDTNCLLLQRYILHRLYPELFPFSL
HAQARRRESLFVPAGWDSEEIVRKLLSPQSLPWPTSATFTQILVPPKGVR
LPLVDEEEEEEEKGKEQNDVSPTRAWLEELLMQQQQQQQQQMQQLDVATG
NSEVFAGSTATTPRASGGDKGKSSSGRAGKGSNSSSSSSRSNTRSSSSTN
SSRSGTRKTKPTSSVSSAVGAVATSDGVEESDEAQIRNFFEGLLAGGGAS
GVGKK*

Synonyms

Publications