NO08G01000.1, NO08G01000.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G01000.1
Unique NameNO08G01000.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2031
Alignment locationchr8:321409..323439 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:321409..323439 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G01000.1 vs.
Match: EWM26714.1 (dynein light intermediate chain [Nannochloropsis gaditana])

HSP 1 Score: 342.4 bits (877), Expect = 3.000e-90
Identity = 264/655 (40.31%), Postives = 361/655 (55.11%), Query Frame = 0 
Query:   14 KQQQEQHWAALLSEAAANSKGQPKFNSGTVLFLGDA-VGKTRLVKRFQKIPKRADKLAFMVGERMEAGRATTEEEKLECLEAGEEASSL------PLLSYSYFDAPGEARDEGSSSGSNIGRRGSVRTSERGMSPDTRLRRNNDIESGGSYDDDDMDSAARINIWSLSDPSYKTLLQVAFDDSQGDCCDKEAGGNEADQSTKTEMARTGRKAGAR-AKALQRTVCMIGVDLTRPWTCEAALQQWVEVLKAVLAE---AGCSEGDRGGGGQGDGQEDEEEIMRKERLVAYLTKCYDGGATSKQWHQRKKEQQEDKQEEEEEEEEEEEEEEEGKDVVKEVPVFRVHKSSPLRSRTVSSRCSSPSS-LPPGVLTENLGVPLIVVGLQADLVHAPDSFEDEQRSQFLQQYLRSFCLKHGAALVYVSATRDTNCLLLQRYILHRLYPELFPFSLHAQARRRESLFVPAGWDSEEIVRKLLSPQSLPWPTSATFTQILVPPKGVRLPL--------VDEEEEEEEKGKEQNDVSPTRAWLEELLMQQQQQQQQQMQQLDVATGNSEVFAGSTATTPRASGGDKGKSSSGRAGKGSNSSSSSSRSNTRSSSSTNSSRSGTRKTKPTSSVSSAVGAVATSDGVEESDEAQIRNFFEGLLAGGG 649
            +++ E  W  LL+EAA +   Q  F  GT+LFLGDA VGKTRL+ RF       ++ A   G    A     EEEK +  E G+E S         LLSY++F A      +      + G  G       G  P    +   + +     D+++MD+ AR+N+WSLSDP+ K LL VA DD       + A    ++  T      +   + +  A+ LQRT+CMI +DLTRPW CE+AL++WV VL++VL E   AGC +G+         +E EEE +RK RLVAYL++CY G    + W +R                 E +EE+EG  + +   VFR+++      R +SS   + S+ LP GVL ENLGVPL+VVGL+ADL   PDS++D  RS F QQYLR  CLK+GA+LVY SA+   NCLLLQRY+LHRLYPE F F L  QA R  + FVP+GWD+ E+V+KLLSPQ++PWP S TF++I VPPKG R  L        V  E  E+E  +   +++PT+AWLE L  QQQQQ+Q+  Q L    G+ +       T    + G  G   +G   +G   S+   RS TR  +S  S     ++++P ++   A             D+A+IRNFFEGLLAGGG
Sbjct:   11 QRETELIWGPLLAEAARSE--QSNFTPGTILFLGDAAVGKTRLIDRFITSYDALERQAAATGRNFIA-----EEEKED--EEGQEGSGALSSHDHSLLSYAFFPAIDPVGCKAGGQSWDNGTVGRSSDCLPGRCPAGASKGLAEDDQDAGVDENEMDAGARVNVWSLSDPALKDLLHVALDDPG---VRRRAASIRSEVPTDPRFDTSSLNSKSTPAQTLQRTICMIAIDLTRPWACESALERWVGVLRSVLGEKARAGCHKGE---------EEGEEERVRKARLVAYLSRCYQGEDMDRVWLERG----------------ELKEEDEGGGLEEPKVVFRINRMESSGGRPLSSPQPARSTPLPAGVLEENLGVPLVVVGLKADLAPVPDSYDDGLRSLFFQQYLRRVCLKYGASLVYTSASNGDNCLLLQRYLLHRLYPEHFSFLLPVQAPRALT-FVPSGWDTPELVQKLLSPQAVPWPPSLTFSEIFVPPKGARAYLDRGDGGAEVCSETWEQESSERHTEITPTQAWLERLWEQQQQQRQRCPQNL----GDGDC----GRTMAGEADGSAGNHDAGGLREGPMGSTGKGRS-TRYGNSNRSIGEANQRSEPYNAGGGA-------------DKAEIRNFFEGLLAGGG 605
The following BLAST results are available for this feature:
BLAST of NO08G01000.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26714.13.000e-9040.31dynein light intermediate chain [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G01000NO08G01000Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G01000.1NO08G01000.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G01000.1.cds1NO08G01000.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G01000.1 ID=NO08G01000.1|Name=NO08G01000.1|organism=Nannochloropsis oceanica|type=mRNA|length=2031bp
ATGTCCAACTTGAGAGATGGCATCGGCAGGGTCCCGCGGAAGCAACAACA
AGAACAACATTGGGCGGCGCTGCTTTCCGAGGCCGCTGCCAACTCGAAAG
GCCAGCCAAAATTTAACTCTGGGACGGTCCTATTCTTGGGCGATGCGGTG
GGCAAAACCCGCCTGGTGAAACGTTTTCAAAAAATCCCTAAACGTGCAGA
TAAGCTGGCATTCATGGTGGGGGAGAGGATGGAGGCGGGGAGAGCTACAA
CTGAGGAGGAGAAGCTGGAGTGTCTTGAAGCCGGCGAAGAAGCGTCCAGT
CTGCCTCTGCTTTCCTACTCCTACTTTGATGCTCCTGGCGAGGCGCGGGA
TGAGGGAAGCAGTAGCGGCAGTAATATTGGTAGAAGGGGAAGCGTACGAA
CGAGTGAGCGTGGCATGTCTCCAGATACTCGCCTGCGACGTAATAACGAC
ATTGAATCGGGTGGCAGCTACGATGACGACGACATGGACTCTGCGGCGCG
CATAAATATATGGTCCCTCAGTGACCCCAGCTACAAAACTCTGCTACAAG
TGGCGTTTGATGATTCACAGGGGGATTGCTGCGACAAGGAAGCTGGGGGG
AATGAAGCCGACCAGAGCACAAAGACGGAGATGGCAAGGACGGGAAGGAA
AGCAGGCGCACGGGCAAAAGCCTTGCAACGCACTGTCTGCATGATCGGAG
TAGATTTGACCCGACCTTGGACATGTGAAGCAGCTCTGCAGCAATGGGTG
GAGGTTTTGAAAGCCGTGCTTGCCGAGGCGGGATGTAGTGAGGGAGACAG
AGGAGGAGGAGGGCAGGGAGATGGGCAGGAAGACGAGGAAGAAATCATGC
GCAAAGAAAGATTGGTGGCTTACCTCACCAAATGTTATGACGGTGGTGCA
ACGTCTAAGCAGTGGCATCAGCGGAAAAAAGAGCAACAAGAGGACAAGCA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGA
AAGATGTAGTCAAGGAAGTCCCTGTATTCCGAGTTCACAAATCATCGCCC
CTGAGAAGCAGAACTGTCTCCTCTCGCTGCTCCAGTCCTTCCTCCCTCCC
TCCCGGAGTCCTGACTGAGAACCTCGGCGTTCCTCTCATCGTCGTAGGCC
TCCAAGCCGATCTCGTCCACGCCCCCGACAGCTTCGAAGACGAGCAACGC
AGCCAGTTCCTCCAACAATACCTCCGTTCCTTTTGCCTTAAGCACGGTGC
GGCCCTCGTCTACGTCTCCGCCACCCGGGACACCAACTGCCTGCTCCTCC
AACGCTACATACTCCACCGCCTCTATCCGGAGCTTTTCCCATTCTCTCTC
CACGCACAAGCCCGTCGCCGAGAGTCCCTCTTCGTCCCTGCCGGATGGGA
TTCGGAAGAGATCGTACGGAAACTTTTGTCACCCCAGAGCTTGCCGTGGC
CCACATCTGCGACGTTCACTCAGATTTTGGTCCCGCCGAAAGGGGTGCGT
CTGCCACTCGTGGATGAGGAGGAAGAAGAGGAGGAAAAAGGAAAGGAGCA
GAACGACGTGAGTCCAACACGGGCATGGTTGGAGGAGCTCTTAATGCAGC
AGCAGCAGCAGCAGCAGCAGCAGATGCAGCAACTGGACGTAGCCACAGGG
AATAGTGAGGTTTTTGCAGGCTCTACAGCAACGACGCCGCGGGCATCTGG
GGGGGACAAGGGCAAGTCATCTTCTGGAAGAGCGGGCAAGGGAAGCAACA
GTAGCAGCAGCAGCAGTAGGAGCAACACCAGAAGCAGCAGTAGCACCAAC
AGCTCACGCTCTGGCACCAGGAAAACAAAGCCGACGTCATCAGTATCTTC
GGCGGTGGGCGCGGTGGCGACAAGCGATGGGGTTGAGGAAAGTGATGAGG
CACAAATTCGCAATTTCTTTGAAGGGCTTTTGGCCGGTGGCGGTGCCAGC
GGTGTCGGAAAGAAATGAATCACAAGAAGCGATAATAAAGTAAATAGACG
ATTGGAGAAGCCGCTAGATAAGTATCAAAAC
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protein sequence of NO08G01000.1

>NO08G01000.1-protein ID=NO08G01000.1-protein|Name=NO08G01000.1|organism=Nannochloropsis oceanica|type=polypeptide|length=656bp
MSNLRDGIGRVPRKQQQEQHWAALLSEAAANSKGQPKFNSGTVLFLGDAV
GKTRLVKRFQKIPKRADKLAFMVGERMEAGRATTEEEKLECLEAGEEASS
LPLLSYSYFDAPGEARDEGSSSGSNIGRRGSVRTSERGMSPDTRLRRNND
IESGGSYDDDDMDSAARINIWSLSDPSYKTLLQVAFDDSQGDCCDKEAGG
NEADQSTKTEMARTGRKAGARAKALQRTVCMIGVDLTRPWTCEAALQQWV
EVLKAVLAEAGCSEGDRGGGGQGDGQEDEEEIMRKERLVAYLTKCYDGGA
TSKQWHQRKKEQQEDKQEEEEEEEEEEEEEEEGKDVVKEVPVFRVHKSSP
LRSRTVSSRCSSPSSLPPGVLTENLGVPLIVVGLQADLVHAPDSFEDEQR
SQFLQQYLRSFCLKHGAALVYVSATRDTNCLLLQRYILHRLYPELFPFSL
HAQARRRESLFVPAGWDSEEIVRKLLSPQSLPWPTSATFTQILVPPKGVR
LPLVDEEEEEEEKGKEQNDVSPTRAWLEELLMQQQQQQQQQMQQLDVATG
NSEVFAGSTATTPRASGGDKGKSSSGRAGKGSNSSSSSSRSNTRSSSSTN
SSRSGTRKTKPTSSVSSAVGAVATSDGVEESDEAQIRNFFEGLLAGGGAS
GVGKK*
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mRNA from alignment at chr8:321409..323439-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G01000.1 ID=NO08G01000.1|Name=NO08G01000.1|organism=Nannochloropsis oceanica|type=mRNA|length=2031bp|location=Sequence derived from alignment at chr8:321409..323439- (Nannochloropsis oceanica)
ATGTCCAACTTGAGAGATGGCATCGGCAGGGTCCCGCGGAAGCAACAACA
AGAACAACATTGGGCGGCGCTGCTTTCCGAGGCCGCTGCCAACTCGAAAG
GCCAGCCAAAATTTAACTCTGGGACGGTCCTATTCTTGGGCGATGCGGTG
GGCAAAACCCGCCTGGTGAAACGTTTTCAAAAAATCCCTAAACGTGCAGA
TAAGCTGGCATTCATGGTGGGGGAGAGGATGGAGGCGGGGAGAGCTACAA
CTGAGGAGGAGAAGCTGGAGTGTCTTGAAGCCGGCGAAGAAGCGTCCAGT
CTGCCTCTGCTTTCCTACTCCTACTTTGATGCTCCTGGCGAGGCGCGGGA
TGAGGGAAGCAGTAGCGGCAGTAATATTGGTAGAAGGGGAAGCGTACGAA
CGAGTGAGCGTGGCATGTCTCCAGATACTCGCCTGCGACGTAATAACGAC
ATTGAATCGGGTGGCAGCTACGATGACGACGACATGGACTCTGCGGCGCG
CATAAATATATGGTCCCTCAGTGACCCCAGCTACAAAACTCTGCTACAAG
TGGCGTTTGATGATTCACAGGGGGATTGCTGCGACAAGGAAGCTGGGGGG
AATGAAGCCGACCAGAGCACAAAGACGGAGATGGCAAGGACGGGAAGGAA
AGCAGGCGCACGGGCAAAAGCCTTGCAACGCACTGTCTGCATGATCGGAG
TAGATTTGACCCGACCTTGGACATGTGAAGCAGCTCTGCAGCAATGGGTG
GAGGTTTTGAAAGCCGTGCTTGCCGAGGCGGGATGTAGTGAGGGAGACAG
AGGAGGAGGAGGGCAGGGAGATGGGCAGGAAGACGAGGAAGAAATCATGC
GCAAAGAAAGATTGGTGGCTTACCTCACCAAATGTTATGACGGTGGTGCA
ACGTCTAAGCAGTGGCATCAGCGGAAAAAAGAGCAACAAGAGGACAAGCA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGA
AAGATGTAGTCAAGGAAGTCCCTGTATTCCGAGTTCACAAATCATCGCCC
CTGAGAAGCAGAACTGTCTCCTCTCGCTGCTCCAGTCCTTCCTCCCTCCC
TCCCGGAGTCCTGACTGAGAACCTCGGCGTTCCTCTCATCGTCGTAGGCC
TCCAAGCCGATCTCGTCCACGCCCCCGACAGCTTCGAAGACGAGCAACGC
AGCCAGTTCCTCCAACAATACCTCCGTTCCTTTTGCCTTAAGCACGGTGC
GGCCCTCGTCTACGTCTCCGCCACCCGGGACACCAACTGCCTGCTCCTCC
AACGCTACATACTCCACCGCCTCTATCCGGAGCTTTTCCCATTCTCTCTC
CACGCACAAGCCCGTCGCCGAGAGTCCCTCTTCGTCCCTGCCGGATGGGA
TTCGGAAGAGATCGTACGGAAACTTTTGTCACCCCAGAGCTTGCCGTGGC
CCACATCTGCGACGTTCACTCAGATTTTGGTCCCGCCGAAAGGGGTGCGT
CTGCCACTCGTGGATGAGGAGGAAGAAGAGGAGGAAAAAGGAAAGGAGCA
GAACGACGTGAGTCCAACACGGGCATGGTTGGAGGAGCTCTTAATGCAGC
AGCAGCAGCAGCAGCAGCAGCAGATGCAGCAACTGGACGTAGCCACAGGG
AATAGTGAGGTTTTTGCAGGCTCTACAGCAACGACGCCGCGGGCATCTGG
GGGGGACAAGGGCAAGTCATCTTCTGGAAGAGCGGGCAAGGGAAGCAACA
GTAGCAGCAGCAGCAGTAGGAGCAACACCAGAAGCAGCAGTAGCACCAAC
AGCTCACGCTCTGGCACCAGGAAAACAAAGCCGACGTCATCAGTATCTTC
GGCGGTGGGCGCGGTGGCGACAAGCGATGGGGTTGAGGAAAGTGATGAGG
CACAAATTCGCAATTTCTTTGAAGGGCTTTTGGCCGGTGGCGGTGCCAGC
GGTGTCGGAAAGAAATGAATCACAAGAAGCGATAATAAAGTAAATAGACG
ATTGGAGAAGCCGCTAGATAAGTATCAAAAC
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Coding sequence (CDS) from alignment at chr8:321409..323439-

>NO08G01000.1 ID=NO08G01000.1|Name=NO08G01000.1|organism=Nannochloropsis oceanica|type=CDS|length=1968bp|location=Sequence derived from alignment at chr8:321409..323439- (Nannochloropsis oceanica)
ATGTCCAACTTGAGAGATGGCATCGGCAGGGTCCCGCGGAAGCAACAACA
AGAACAACATTGGGCGGCGCTGCTTTCCGAGGCCGCTGCCAACTCGAAAG
GCCAGCCAAAATTTAACTCTGGGACGGTCCTATTCTTGGGCGATGCGGTG
GGCAAAACCCGCCTGGTGAAACGTTTTCAAAAAATCCCTAAACGTGCAGA
TAAGCTGGCATTCATGGTGGGGGAGAGGATGGAGGCGGGGAGAGCTACAA
CTGAGGAGGAGAAGCTGGAGTGTCTTGAAGCCGGCGAAGAAGCGTCCAGT
CTGCCTCTGCTTTCCTACTCCTACTTTGATGCTCCTGGCGAGGCGCGGGA
TGAGGGAAGCAGTAGCGGCAGTAATATTGGTAGAAGGGGAAGCGTACGAA
CGAGTGAGCGTGGCATGTCTCCAGATACTCGCCTGCGACGTAATAACGAC
ATTGAATCGGGTGGCAGCTACGATGACGACGACATGGACTCTGCGGCGCG
CATAAATATATGGTCCCTCAGTGACCCCAGCTACAAAACTCTGCTACAAG
TGGCGTTTGATGATTCACAGGGGGATTGCTGCGACAAGGAAGCTGGGGGG
AATGAAGCCGACCAGAGCACAAAGACGGAGATGGCAAGGACGGGAAGGAA
AGCAGGCGCACGGGCAAAAGCCTTGCAACGCACTGTCTGCATGATCGGAG
TAGATTTGACCCGACCTTGGACATGTGAAGCAGCTCTGCAGCAATGGGTG
GAGGTTTTGAAAGCCGTGCTTGCCGAGGCGGGATGTAGTGAGGGAGACAG
AGGAGGAGGAGGGCAGGGAGATGGGCAGGAAGACGAGGAAGAAATCATGC
GCAAAGAAAGATTGGTGGCTTACCTCACCAAATGTTATGACGGTGGTGCA
ACGTCTAAGCAGTGGCATCAGCGGAAAAAAGAGCAACAAGAGGACAAGCA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGA
AAGATGTAGTCAAGGAAGTCCCTGTATTCCGAGTTCACAAATCATCGCCC
CTGAGAAGCAGAACTGTCTCCTCTCGCTGCTCCAGTCCTTCCTCCCTCCC
TCCCGGAGTCCTGACTGAGAACCTCGGCGTTCCTCTCATCGTCGTAGGCC
TCCAAGCCGATCTCGTCCACGCCCCCGACAGCTTCGAAGACGAGCAACGC
AGCCAGTTCCTCCAACAATACCTCCGTTCCTTTTGCCTTAAGCACGGTGC
GGCCCTCGTCTACGTCTCCGCCACCCGGGACACCAACTGCCTGCTCCTCC
AACGCTACATACTCCACCGCCTCTATCCGGAGCTTTTCCCATTCTCTCTC
CACGCACAAGCCCGTCGCCGAGAGTCCCTCTTCGTCCCTGCCGGATGGGA
TTCGGAAGAGATCGTACGGAAACTTTTGTCACCCCAGAGCTTGCCGTGGC
CCACATCTGCGACGTTCACTCAGATTTTGGTCCCGCCGAAAGGGGTGCGT
CTGCCACTCGTGGATGAGGAGGAAGAAGAGGAGGAAAAAGGAAAGGAGCA
GAACGACGTGAGTCCAACACGGGCATGGTTGGAGGAGCTCTTAATGCAGC
AGCAGCAGCAGCAGCAGCAGCAGATGCAGCAACTGGACGTAGCCACAGGG
AATAGTGAGGTTTTTGCAGGCTCTACAGCAACGACGCCGCGGGCATCTGG
GGGGGACAAGGGCAAGTCATCTTCTGGAAGAGCGGGCAAGGGAAGCAACA
GTAGCAGCAGCAGCAGTAGGAGCAACACCAGAAGCAGCAGTAGCACCAAC
AGCTCACGCTCTGGCACCAGGAAAACAAAGCCGACGTCATCAGTATCTTC
GGCGGTGGGCGCGGTGGCGACAAGCGATGGGGTTGAGGAAAGTGATGAGG
CACAAATTCGCAATTTCTTTGAAGGGCTTTTGGCCGGTGGCGGTGCCAGC
GGTGTCGGAAAGAAATGA
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Synonyms
Publications